Functional metagenomic analysis of the coffee (coffea arabica) fermentation
6 p.
- Autores:
-
Vera Pacheco, Katerine
Valdivieso Quintero, Wilfredo
Mantilla Paredes, Andrea Juliana
Jaimes, William
Torrado, Jorge
Zafra, German
- Tipo de recurso:
- Article of journal
- Fecha de publicación:
- 2018
- Institución:
- Universidad de Santander
- Repositorio:
- Repositorio Universidad de Santander
- Idioma:
- eng
- OAI Identifier:
- oai:repositorio.udes.edu.co:001/3403
- Acceso en línea:
- https://repositorio.udes.edu.co/handle/001/3403
- Palabra clave:
- Metagenomic Analysis
Coffee
Coffea arabica
Fermentation
- Rights
- openAccess
- License
- Derechos Reservados - The Italian Association of Chemical Engineering, 2018
| id |
RUDES2_54c55cedda048926ecf1dc033eeb1af4 |
|---|---|
| oai_identifier_str |
oai:repositorio.udes.edu.co:001/3403 |
| network_acronym_str |
RUDES2 |
| network_name_str |
Repositorio Universidad de Santander |
| repository_id_str |
|
| dc.title.eng.fl_str_mv |
Functional metagenomic analysis of the coffee (coffea arabica) fermentation |
| title |
Functional metagenomic analysis of the coffee (coffea arabica) fermentation |
| spellingShingle |
Functional metagenomic analysis of the coffee (coffea arabica) fermentation Metagenomic Analysis Coffee Coffea arabica Fermentation |
| title_short |
Functional metagenomic analysis of the coffee (coffea arabica) fermentation |
| title_full |
Functional metagenomic analysis of the coffee (coffea arabica) fermentation |
| title_fullStr |
Functional metagenomic analysis of the coffee (coffea arabica) fermentation |
| title_full_unstemmed |
Functional metagenomic analysis of the coffee (coffea arabica) fermentation |
| title_sort |
Functional metagenomic analysis of the coffee (coffea arabica) fermentation |
| dc.creator.fl_str_mv |
Vera Pacheco, Katerine Valdivieso Quintero, Wilfredo Mantilla Paredes, Andrea Juliana Jaimes, William Torrado, Jorge Zafra, German |
| dc.contributor.author.spa.fl_str_mv |
Vera Pacheco, Katerine Valdivieso Quintero, Wilfredo Mantilla Paredes, Andrea Juliana Jaimes, William Torrado, Jorge Zafra, German |
| dc.subject.proposal.eng.fl_str_mv |
Metagenomic Analysis Coffee Coffea arabica Fermentation |
| topic |
Metagenomic Analysis Coffee Coffea arabica Fermentation |
| description |
6 p. |
| publishDate |
2018 |
| dc.date.issued.spa.fl_str_mv |
2018 |
| dc.date.accessioned.spa.fl_str_mv |
2019-07-16T15:49:06Z |
| dc.date.available.spa.fl_str_mv |
2019-07-16T15:49:06Z |
| dc.type.spa.fl_str_mv |
Artículo de revista |
| dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_2df8fbb1 |
| dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
| dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_6501 |
| dc.type.content.spa.fl_str_mv |
Text |
| dc.type.driver.spa.fl_str_mv |
info:eu-repo/semantics/article |
| dc.type.redcol.spa.fl_str_mv |
http://purl.org/redcol/resource_type/ART |
| dc.type.version.spa.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| format |
http://purl.org/coar/resource_type/c_6501 |
| status_str |
publishedVersion |
| dc.identifier.citation.eng.fl_str_mv |
Vera Pacheco K., Valdivieso Quintero W., Mantilla-Paredes A.J., Jaimes W., Torrado J., Zafra G., 2018, Functional metagenomic analysis of the coffee (coffea arabica) fermentation, Chemical Engineering Transactions, 64, 355-360 DOI: 10.3303/CET1864060 |
| dc.identifier.doi.spa.fl_str_mv |
10.3303/CET1864060 |
| dc.identifier.issn.spa.fl_str_mv |
2283-9216 978-88-95608-56-3 |
| dc.identifier.uri.spa.fl_str_mv |
https://repositorio.udes.edu.co/handle/001/3403 |
| identifier_str_mv |
Vera Pacheco K., Valdivieso Quintero W., Mantilla-Paredes A.J., Jaimes W., Torrado J., Zafra G., 2018, Functional metagenomic analysis of the coffee (coffea arabica) fermentation, Chemical Engineering Transactions, 64, 355-360 DOI: 10.3303/CET1864060 10.3303/CET1864060 2283-9216 978-88-95608-56-3 |
| url |
https://repositorio.udes.edu.co/handle/001/3403 |
| dc.language.iso.spa.fl_str_mv |
eng |
| language |
eng |
| dc.relation.ispartof.eng.fl_str_mv |
Chemical Engineering Transactions |
| dc.rights.spa.fl_str_mv |
Derechos Reservados - The Italian Association of Chemical Engineering, 2018 |
| dc.rights.coar.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
| dc.rights.accessrights.spa.fl_str_mv |
info:eu-repo/semantics/openAccess |
| dc.rights.creativecommons.spa.fl_str_mv |
Atribución-NoComercial 4.0 Internacional (CC BY-NC 4.0) |
| dc.rights.uri.spa.fl_str_mv |
https://creativecommons.org/licenses/by-nc/4.0/ |
| rights_invalid_str_mv |
Derechos Reservados - The Italian Association of Chemical Engineering, 2018 Atribución-NoComercial 4.0 Internacional (CC BY-NC 4.0) https://creativecommons.org/licenses/by-nc/4.0/ http://purl.org/coar/access_right/c_abf2 |
| eu_rights_str_mv |
openAccess |
| dc.format.mimetype.spa.fl_str_mv |
application/pdf |
| dc.source.eng.fl_str_mv |
https://www.aidic.it/cet/18/64/060.pdf |
| institution |
Universidad de Santander |
| bitstream.url.fl_str_mv |
https://repositorio.udes.edu.co/bitstreams/fc393e59-2cb2-4327-a39f-59f392eff3f3/download https://repositorio.udes.edu.co/bitstreams/fbf867e2-b07e-470e-8c03-db030442f4b1/download https://repositorio.udes.edu.co/bitstreams/861d8f5b-cfbb-41de-a7cd-8821d4f50c60/download https://repositorio.udes.edu.co/bitstreams/4413da50-3248-475e-818f-9d9acc41e8ef/download |
| bitstream.checksum.fl_str_mv |
f0634283ef75e008e903af70c456d326 703468ed511d1eba4866110fc97b609e bcd483cc5ba702409ed08103d41d99df 38d94cf55aa1bf2dac1a736ac45c881c |
| bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 |
| repository.name.fl_str_mv |
Repositorio Universidad de Santander |
| repository.mail.fl_str_mv |
soporte@metabiblioteca.com |
| _version_ |
1818102047006785536 |
| spelling |
Vera Pacheco, Katerine9c6999b8-ece8-42a7-9ede-3c2bafc21c4b-1Valdivieso Quintero, Wilfredo869192ef-b635-464e-91ff-f62395e0944c-1Mantilla Paredes, Andrea Juliana6694cfc5-8ebb-495b-bc35-903a1e9804c2-1Jaimes, Williamc58955f5-930c-478c-9347-263d8af954c5-1Torrado, Jorgebe71f26a-9892-4ecb-8967-9ee5b30a239c-1Zafra, Germanc56c5a89-cc73-40a7-9874-3d51a0b5fbaf-12019-07-16T15:49:06Z2019-07-16T15:49:06Z20186 p.This study focused on studying the influence of the temperature and time on the functional diversity of the microbial populations involved in coffee (Coffea arabica) fermentation, using a shotgun metagenomic approach. Fermentations of depulped coffee grains were carried out under controlled and non-controlled temperature conditions for 24 h. Paired-end whole genome sequencing from mucilage samples was performed using an Illumina Hiseq 2x150 platform. Global and specific gene abundance was analyzed using the KEGG orthology (KO). Results showed a predominance of genes involved in carbohydrate and aminoacid metabolism during fermentations. The abundance of genes involved in glycolysis / gluconeogenesis, lactate fermentation and mixed acids were higher during fermentation conducted under non-controlled temperature conditions; however, fermentations carried out at 11 °C induced a significant increase in the abundance of genes involved in the synthesis of aminoacid, lipids and organic acids, as well as protein secretion systems. We concluded that different temperatures and conditions in fermentations produce appreciable changes on the functional potential of both aminoacid and carbohydrate metabolism, especially in the abundance of Nacetyl-lysine deacetylase, pyruvate dehydrogenase and 6-phosphofructokinase genes, which in turn could greatly affect the taste and quality of coffee. This information, together with the results from coffee cupping, provided valuable insights into the role microorganisms involved in coffee fermentation play in obtaining better taste attributes, as well to identify key genes and potential metabolic pathways associated with these special attributes.application/pdfVera Pacheco K., Valdivieso Quintero W., Mantilla-Paredes A.J., Jaimes W., Torrado J., Zafra G., 2018, Functional metagenomic analysis of the coffee (coffea arabica) fermentation, Chemical Engineering Transactions, 64, 355-360 DOI: 10.3303/CET186406010.3303/CET18640602283-9216978-88-95608-56-3https://repositorio.udes.edu.co/handle/001/3403engChemical Engineering TransactionsDerechos Reservados - The Italian Association of Chemical Engineering, 2018info:eu-repo/semantics/openAccessAtribución-NoComercial 4.0 Internacional (CC BY-NC 4.0)https://creativecommons.org/licenses/by-nc/4.0/http://purl.org/coar/access_right/c_abf2https://www.aidic.it/cet/18/64/060.pdfMetagenomic AnalysisCoffeeCoffea arabicaFermentationFunctional metagenomic analysis of the coffee (coffea arabica) fermentationArtículo de revistahttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1Textinfo:eu-repo/semantics/articlehttp://purl.org/redcol/resource_type/ARTinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/version/c_970fb48d4fbd8a85PublicationTHUMBNAILFunctional metagenomic analysis of the coffee (coffea arabica) fermentation.pdf.jpgFunctional metagenomic analysis of the coffee (coffea arabica) fermentation.pdf.jpgGenerated Thumbnailimage/jpeg1657https://repositorio.udes.edu.co/bitstreams/fc393e59-2cb2-4327-a39f-59f392eff3f3/downloadf0634283ef75e008e903af70c456d326MD54ORIGINALFunctional metagenomic analysis of the coffee (coffea arabica) fermentation.pdfFunctional metagenomic analysis of the coffee (coffea arabica) fermentation.pdfapplication/pdf251223https://repositorio.udes.edu.co/bitstreams/fbf867e2-b07e-470e-8c03-db030442f4b1/download703468ed511d1eba4866110fc97b609eMD55TEXTFunctional metagenomic analysis of the coffee (coffea arabica) fermentation.pdf.txtFunctional metagenomic analysis of the coffee (coffea arabica) fermentation.pdf.txtExtracted texttext/plain21981https://repositorio.udes.edu.co/bitstreams/861d8f5b-cfbb-41de-a7cd-8821d4f50c60/downloadbcd483cc5ba702409ed08103d41d99dfMD53LICENSElicense.txtlicense.txttext/plain; charset=utf-859https://repositorio.udes.edu.co/bitstreams/4413da50-3248-475e-818f-9d9acc41e8ef/download38d94cf55aa1bf2dac1a736ac45c881cMD52001/3403oai:repositorio.udes.edu.co:001/34032023-10-11 10:27:39.308https://creativecommons.org/licenses/by-nc/4.0/Derechos Reservados - The Italian Association of Chemical Engineering, 2018https://repositorio.udes.edu.coRepositorio Universidad de Santandersoporte@metabiblioteca.comTGljZW5jaWEgZGUgUHVibGljYWNpw7NuIFVERVMKRGlyZWN0cmljZXMgZGUgVVNPIHkgQUNDRVNPCgo= |