Enzymatic Production Of Non-Natural Nucleoside-5′-Monophosphates By A Thermostable Uracil Phosphoribosyltransferase

The use of enzymes as biocatalysts applied to synthesis of modified nucleoside-5′-monophosphates (NMPs) is an interesting alternative to traditional multistep chemical methods which offers several advantages, such as stereo-, regio-, and enantioselectivity, simple downstream processing, and mild rea...

Full description

Autores:
Del Arco, Jon
Acosta, Javier
D'Muniz Pereira, Humberto
Perona, Almudena
Lokanath, Neratur Krishnappagowda
Kunishima, Naoki
Fernandez Lucas, Jesus
Tipo de recurso:
Article of journal
Fecha de publicación:
2018
Institución:
Corporación Universidad de la Costa
Repositorio:
REDICUC - Repositorio CUC
Idioma:
eng
OAI Identifier:
oai:repositorio.cuc.edu.co:11323/1711
Acceso en línea:
https://hdl.handle.net/11323/1711
https://doi.org/10.1002/cctc.201701223
https://repositorio.cuc.edu.co/
Palabra clave:
Biocatalysis
Biological Activity
Enzymes
Nucleotides
Structure Elucidation
Rights
openAccess
License
Atribución – No comercial – Compartir igual
id RCUC2_bd765ec9ea4c10a1473c879a5020227d
oai_identifier_str oai:repositorio.cuc.edu.co:11323/1711
network_acronym_str RCUC2
network_name_str REDICUC - Repositorio CUC
repository_id_str
dc.title.eng.fl_str_mv Enzymatic Production Of Non-Natural Nucleoside-5′-Monophosphates By A Thermostable Uracil Phosphoribosyltransferase
title Enzymatic Production Of Non-Natural Nucleoside-5′-Monophosphates By A Thermostable Uracil Phosphoribosyltransferase
spellingShingle Enzymatic Production Of Non-Natural Nucleoside-5′-Monophosphates By A Thermostable Uracil Phosphoribosyltransferase
Biocatalysis
Biological Activity
Enzymes
Nucleotides
Structure Elucidation
title_short Enzymatic Production Of Non-Natural Nucleoside-5′-Monophosphates By A Thermostable Uracil Phosphoribosyltransferase
title_full Enzymatic Production Of Non-Natural Nucleoside-5′-Monophosphates By A Thermostable Uracil Phosphoribosyltransferase
title_fullStr Enzymatic Production Of Non-Natural Nucleoside-5′-Monophosphates By A Thermostable Uracil Phosphoribosyltransferase
title_full_unstemmed Enzymatic Production Of Non-Natural Nucleoside-5′-Monophosphates By A Thermostable Uracil Phosphoribosyltransferase
title_sort Enzymatic Production Of Non-Natural Nucleoside-5′-Monophosphates By A Thermostable Uracil Phosphoribosyltransferase
dc.creator.fl_str_mv Del Arco, Jon
Acosta, Javier
D'Muniz Pereira, Humberto
Perona, Almudena
Lokanath, Neratur Krishnappagowda
Kunishima, Naoki
Fernandez Lucas, Jesus
dc.contributor.author.spa.fl_str_mv Del Arco, Jon
Acosta, Javier
D'Muniz Pereira, Humberto
Perona, Almudena
Lokanath, Neratur Krishnappagowda
Kunishima, Naoki
Fernandez Lucas, Jesus
dc.subject.eng.fl_str_mv Biocatalysis
Biological Activity
Enzymes
Nucleotides
Structure Elucidation
topic Biocatalysis
Biological Activity
Enzymes
Nucleotides
Structure Elucidation
description The use of enzymes as biocatalysts applied to synthesis of modified nucleoside-5′-monophosphates (NMPs) is an interesting alternative to traditional multistep chemical methods which offers several advantages, such as stereo-, regio-, and enantioselectivity, simple downstream processing, and mild reaction conditions. Herein we report the recombinant expression, production, and purification of uracil phosphoribosyltransferase from Thermus themophilus HB8 (TtUPRT). The structure of TtUPRT has been determined by protein crystallography, and its substrate specificity and biochemical characteristics have been analyzed, providing new structural insights into the substrate-binding mode. Biochemical characterization of the recombinant protein indicates that the enzyme is a homotetramer, with activity and stability across a broad range of temperatures (50–80 °C), pH (5.5–9) and ionic strength (0–500 mm NaCl). Surprisingly, TtUPRT is able to recognize several 5 and 6-substituted pyrimidines as substrates. These experimental results suggest TtUPRT could be a valuable biocatalyst for the synthesis of modified NMPs.
publishDate 2018
dc.date.accessioned.none.fl_str_mv 2018-11-22T15:07:03Z
dc.date.available.none.fl_str_mv 2018-11-22T15:07:03Z
dc.date.issued.none.fl_str_mv 2018-06-23
dc.type.spa.fl_str_mv Artículo de revista
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_2df8fbb1
dc.type.coar.spa.fl_str_mv http://purl.org/coar/resource_type/c_6501
dc.type.content.spa.fl_str_mv Text
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/article
dc.type.redcol.spa.fl_str_mv http://purl.org/redcol/resource_type/ART
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/acceptedVersion
format http://purl.org/coar/resource_type/c_6501
status_str acceptedVersion
dc.identifier.issn.spa.fl_str_mv 18673880
dc.identifier.uri.spa.fl_str_mv https://hdl.handle.net/11323/1711
dc.identifier.doi.spa.fl_str_mv https://doi.org/10.1002/cctc.201701223
dc.identifier.instname.spa.fl_str_mv Corporación Universidad de la Costa
dc.identifier.reponame.spa.fl_str_mv REDICUC - Repositorio CUC
dc.identifier.repourl.spa.fl_str_mv https://repositorio.cuc.edu.co/
identifier_str_mv 18673880
Corporación Universidad de la Costa
REDICUC - Repositorio CUC
url https://hdl.handle.net/11323/1711
https://doi.org/10.1002/cctc.201701223
https://repositorio.cuc.edu.co/
dc.language.iso.none.fl_str_mv eng
language eng
dc.rights.spa.fl_str_mv Atribución – No comercial – Compartir igual
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.coar.spa.fl_str_mv http://purl.org/coar/access_right/c_abf2
rights_invalid_str_mv Atribución – No comercial – Compartir igual
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.publisher.spa.fl_str_mv ChemCatChem
institution Corporación Universidad de la Costa
bitstream.url.fl_str_mv https://repositorio.cuc.edu.co/bitstreams/a8f9ccb6-6526-4048-9eae-f1e7c7d608eb/download
https://repositorio.cuc.edu.co/bitstreams/371f6a48-c487-405b-b8b4-fbdf21f1d414/download
https://repositorio.cuc.edu.co/bitstreams/e8a5a4d9-ae9a-493e-bfd7-31a8f1684eca/download
https://repositorio.cuc.edu.co/bitstreams/bb6e6d08-d818-4b88-8956-6e34eea7d002/download
bitstream.checksum.fl_str_mv 561352d89e5643effb127ed388be87c6
8a4605be74aa9ea9d79846c1fba20a33
5753841e25178be5c6d966355414c928
d31ef5db710c5c4faf54da039eef868d
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositorio de la Universidad de la Costa CUC
repository.mail.fl_str_mv repdigital@cuc.edu.co
_version_ 1811760834784788480
spelling Del Arco, JonAcosta, JavierD'Muniz Pereira, HumbertoPerona, AlmudenaLokanath, Neratur KrishnappagowdaKunishima, NaokiFernandez Lucas, Jesus2018-11-22T15:07:03Z2018-11-22T15:07:03Z2018-06-2318673880https://hdl.handle.net/11323/1711https://doi.org/10.1002/cctc.201701223Corporación Universidad de la CostaREDICUC - Repositorio CUChttps://repositorio.cuc.edu.co/The use of enzymes as biocatalysts applied to synthesis of modified nucleoside-5′-monophosphates (NMPs) is an interesting alternative to traditional multistep chemical methods which offers several advantages, such as stereo-, regio-, and enantioselectivity, simple downstream processing, and mild reaction conditions. Herein we report the recombinant expression, production, and purification of uracil phosphoribosyltransferase from Thermus themophilus HB8 (TtUPRT). The structure of TtUPRT has been determined by protein crystallography, and its substrate specificity and biochemical characteristics have been analyzed, providing new structural insights into the substrate-binding mode. Biochemical characterization of the recombinant protein indicates that the enzyme is a homotetramer, with activity and stability across a broad range of temperatures (50–80 °C), pH (5.5–9) and ionic strength (0–500 mm NaCl). Surprisingly, TtUPRT is able to recognize several 5 and 6-substituted pyrimidines as substrates. These experimental results suggest TtUPRT could be a valuable biocatalyst for the synthesis of modified NMPs.Del Arco, Jon-c5ed68af-857c-4b28-99a7-33a4254ed926-0Acosta, Javier-db7704d1-7f5b-4e1e-840f-6bb5e26da600-0D'Muniz Pereira, Humberto-3b22eae9-3583-4512-adfc-de84f8af8372-0Perona, Almudena-d6388df9-bb67-4ff9-be56-ab05771f1650-0Lokanath, Neratur Krishnappagowda-2f36628a-0a7b-4602-a2ef-fa293e0e7949-0Kunishima, Naoki-6baf4ae0-b84a-4faf-b26f-66d30cc43d7a-0Fernandez Lucas, Jesus-3f36c351-7522-42ea-8605-cd7e804a6387-0engChemCatChemAtribución – No comercial – Compartir igualinfo:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2BiocatalysisBiological ActivityEnzymesNucleotidesStructure ElucidationEnzymatic Production Of Non-Natural Nucleoside-5′-Monophosphates By A Thermostable Uracil PhosphoribosyltransferaseArtículo de revistahttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1Textinfo:eu-repo/semantics/articlehttp://purl.org/redcol/resource_type/ARTinfo:eu-repo/semantics/acceptedVersionPublicationORIGINALEnzymatic Production Of Non-Natural.pdfEnzymatic Production Of Non-Natural.pdfapplication/pdf418457https://repositorio.cuc.edu.co/bitstreams/a8f9ccb6-6526-4048-9eae-f1e7c7d608eb/download561352d89e5643effb127ed388be87c6MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://repositorio.cuc.edu.co/bitstreams/371f6a48-c487-405b-b8b4-fbdf21f1d414/download8a4605be74aa9ea9d79846c1fba20a33MD52THUMBNAILEnzymatic Production Of Non-Natural.pdf.jpgEnzymatic Production Of Non-Natural.pdf.jpgimage/jpeg43391https://repositorio.cuc.edu.co/bitstreams/e8a5a4d9-ae9a-493e-bfd7-31a8f1684eca/download5753841e25178be5c6d966355414c928MD54TEXTEnzymatic Production Of Non-Natural.pdf.txtEnzymatic Production Of Non-Natural.pdf.txttext/plain1540https://repositorio.cuc.edu.co/bitstreams/bb6e6d08-d818-4b88-8956-6e34eea7d002/downloadd31ef5db710c5c4faf54da039eef868dMD5511323/1711oai:repositorio.cuc.edu.co:11323/17112024-09-17 14:07:49.22open.accesshttps://repositorio.cuc.edu.coRepositorio de la Universidad de la Costa CUCrepdigital@cuc.edu.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