The complex task of choosing a de novo assembly: Lessons from fungal genomes

Selecting the values of parameters used by de novo genomic assembly programs, or choosing an optimal de novo assembly from several runs obtained with different parameters or programs, are tasks that can require complex decision-making. A key parameter that must be supplied to typical next generation...

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Autores:

Tipo de recurso:

Fecha de publicación:

2014

Institución:

Universidad del Rosario

Repositorio:

Repositorio EdocUR - U. Rosario

Idioma:

eng

OAI Identifier:

oai:repository.urosario.edu.co:10336/23761

Acceso en línea:

https://doi.org/10.1016/j.compbiolchem.2014.08.014
https://repository.urosario.edu.co/handle/10336/23761

Palabra clave:

Complex task
De novo assemblies
Genome assembly
Next-generation sequencing
Spacer DNA
Algorithm
Contig mapping
DNA sequence
Fungal genome
Genetics
High throughput sequencing
Nucleotide repeat
Open reading frame
Paracoccidioides
Quality control
Statistics and numerical data
Algorithms
Benchmarking
Contig Mapping
High-Throughput Nucleotide Sequencing
Open Reading Frames
Paracoccidioides
Genome assembly methods
Next-generation sequencing
Repetitive DNA
Nucleic Acid
DNA
Fungal
Intergenic
DNA
Genome
Repetitive Sequences
Sequence Analysis

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Abierto (Texto Completo)