Evaluación preliminar de la estructura filogeográfica del Trepador Pardo (Dendrocincla fuliginosa, Aves: Furnariidae) en la Orinoquía colombiana
Figuras, tablas, símbolos y abreviaturas.
- Autores:
-
Diaz Cardenas, Jessica Jasbleidy
- Tipo de recurso:
- Trabajo de grado de pregrado
- Fecha de publicación:
- 2016
- Institución:
- Universidad de los Llanos
- Repositorio:
- Repositorio Digital Universidad de los LLanos
- Idioma:
- spa
- OAI Identifier:
- oai:repositorio.unillanos.edu.co:001/3029
- Acceso en línea:
- https://repositorio.unillanos.edu.co/handle/001/3029
https://repositorio.unillanos.edu.co/
- Palabra clave:
- Diversificación biológica
Sotobosque
Distritos biogeográficos
Ríos
Estructura genética
Understory
Biogeographicals districts
Rivers
Genetic structure
- Rights
- openAccess
- License
- Derechos Reservados - Universidad de los Llanos, 2016
| id |
Unillanos2_c284ff26148d1ab0de76f30b0a2d0383 |
|---|---|
| oai_identifier_str |
oai:repositorio.unillanos.edu.co:001/3029 |
| network_acronym_str |
Unillanos2 |
| network_name_str |
Repositorio Digital Universidad de los LLanos |
| repository_id_str |
|
| dc.title.spa.fl_str_mv |
Evaluación preliminar de la estructura filogeográfica del Trepador Pardo (Dendrocincla fuliginosa, Aves: Furnariidae) en la Orinoquía colombiana |
| title |
Evaluación preliminar de la estructura filogeográfica del Trepador Pardo (Dendrocincla fuliginosa, Aves: Furnariidae) en la Orinoquía colombiana |
| spellingShingle |
Evaluación preliminar de la estructura filogeográfica del Trepador Pardo (Dendrocincla fuliginosa, Aves: Furnariidae) en la Orinoquía colombiana Diversificación biológica Sotobosque Distritos biogeográficos Ríos Estructura genética Understory Biogeographicals districts Rivers Genetic structure |
| title_short |
Evaluación preliminar de la estructura filogeográfica del Trepador Pardo (Dendrocincla fuliginosa, Aves: Furnariidae) en la Orinoquía colombiana |
| title_full |
Evaluación preliminar de la estructura filogeográfica del Trepador Pardo (Dendrocincla fuliginosa, Aves: Furnariidae) en la Orinoquía colombiana |
| title_fullStr |
Evaluación preliminar de la estructura filogeográfica del Trepador Pardo (Dendrocincla fuliginosa, Aves: Furnariidae) en la Orinoquía colombiana |
| title_full_unstemmed |
Evaluación preliminar de la estructura filogeográfica del Trepador Pardo (Dendrocincla fuliginosa, Aves: Furnariidae) en la Orinoquía colombiana |
| title_sort |
Evaluación preliminar de la estructura filogeográfica del Trepador Pardo (Dendrocincla fuliginosa, Aves: Furnariidae) en la Orinoquía colombiana |
| dc.creator.fl_str_mv |
Diaz Cardenas, Jessica Jasbleidy |
| dc.contributor.advisor.none.fl_str_mv |
Avendaño, Jorge Enrique |
| dc.contributor.author.none.fl_str_mv |
Diaz Cardenas, Jessica Jasbleidy |
| dc.subject.armarc.none.fl_str_mv |
Diversificación biológica |
| topic |
Diversificación biológica Sotobosque Distritos biogeográficos Ríos Estructura genética Understory Biogeographicals districts Rivers Genetic structure |
| dc.subject.proposal.spa.fl_str_mv |
Sotobosque Distritos biogeográficos Ríos Estructura genética |
| dc.subject.proposal.eng.fl_str_mv |
Understory Biogeographicals districts Rivers Genetic structure |
| description |
Figuras, tablas, símbolos y abreviaturas. |
| publishDate |
2016 |
| dc.date.issued.none.fl_str_mv |
2016 |
| dc.date.accessioned.none.fl_str_mv |
2023-09-27T14:29:07Z |
| dc.date.available.none.fl_str_mv |
2023-09-27T14:29:07Z |
| dc.type.spa.fl_str_mv |
Trabajo de grado - Pregrado |
| dc.type.driver.spa.fl_str_mv |
info:eu-repo/semantics/bachelorThesis |
| dc.type.version.spa.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_7a1f |
| dc.type.content.spa.fl_str_mv |
Text |
| dc.type.redcol.spa.fl_str_mv |
https://purl.org/redcol/resource_type/TP |
| dc.type.coarversion.spa.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
| format |
http://purl.org/coar/resource_type/c_7a1f |
| status_str |
publishedVersion |
| dc.identifier.citation.spa.fl_str_mv |
Diaz Cardenas, J. E. (2016). Evaluación preliminar de la estructura filogeográfica del Trepador Pardo (Dendrocincla fuliginosa, Aves: Furnariidae) en la Orinoquia Colombiana [Trabajo de grado, Universidad de los Llanos]. Repositorio digital Universidad de los Llanos. |
| dc.identifier.uri.none.fl_str_mv |
https://repositorio.unillanos.edu.co/handle/001/3029 |
| dc.identifier.instname.spa.fl_str_mv |
Universidad de los Llanos |
| dc.identifier.reponame.spa.fl_str_mv |
Repositorio digital Universidad de los Llanos |
| dc.identifier.repourl.spa.fl_str_mv |
https://repositorio.unillanos.edu.co/ |
| identifier_str_mv |
Diaz Cardenas, J. E. (2016). Evaluación preliminar de la estructura filogeográfica del Trepador Pardo (Dendrocincla fuliginosa, Aves: Furnariidae) en la Orinoquia Colombiana [Trabajo de grado, Universidad de los Llanos]. Repositorio digital Universidad de los Llanos. Universidad de los Llanos Repositorio digital Universidad de los Llanos |
| url |
https://repositorio.unillanos.edu.co/handle/001/3029 https://repositorio.unillanos.edu.co/ |
| dc.language.iso.spa.fl_str_mv |
spa |
| language |
spa |
| dc.relation.references.spa.fl_str_mv |
Aldana, A., & Mitchley, J. 2013. Protected Areas legislation and the conservation of the Colombian Orinoco Basin natural ecosystems. Nature Conservation, 4, 15. Aleixo, A. 2004. Historical diversification of a terra-firme forest bird superspecies: a phylogeographic perspective on the role of different hypotheses of Amazonian diversification. Evolution, 58(6), 13031317. Arbeláez-Cortés, E. 2013. Knowledge of Colombian biodiversity: published and indexed. Biodiversity and Conservation, 22(12), 2875-2906. Arbogast, B. S., & Kenagy, G. J. 2001. Comparative phylogeography as an integrative approach to historical biogeography. Journal of Biogeography, 28(7), 819-825. Avise, J. C., Arnold, J., Ball, R. M., Bermingham, E., Lamb, T., Neigel, J. E., ... & Saunders, N. C. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual review of ecology and systematics, 489-522. Bandelt, H.-J., Forster, P., Rohl, A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16, 37–48. Bates, J. M., Cadena, C. D., Tello, J. G., & Brumfield, R. T. 2008. Diversification in the Neotropics: phylogenetic patterns and historical processes. Ornitologia Neotropical, 19, 427-432. Bates, J. M., Tello, J. G., & Silva, J. M. C. 2003. Initial assessment of genetic diversity in ten bird species of South American Cerrado. Studies on Neotropical Fauna and Environment, 38(2), 87-94. Berrio, J. C., Hooghiemstra, H., Behling, H., Botero, P., & Van der Borg, K. 2002. Late-Quaternary savanna history of the Colombian Llanos Orientales from Lagunas Chenevo and Mozambique: a transect synthesis. The Holocene, 12(1), 35-48. Brumfield, R. T., & Capparella, A. P. 1996. Historical diversification of birds in northwestern South America: a molecular perspective on the role of vicariant events. Evolution, 1607-1624. Burg, T. M., & Croxall, J. P. 2001. Global relationships amongst black‐browed and grey‐headed albatrosses: analysis of population structure using mitochondrial DNA and microsatellites. Molecular Ecology, 10(11), 2647-2660. Burney, C. W., & Brumfield, R. T. 2009. Ecology predicts levels of genetic differentiation in Neotropical birds. The American Naturalist, 174(3), 358-368. Cadena, C. D., Klicka, J., & Ricklefs, R. E. 2007. Evolutionary differentiation in the Neotropical montane region: molecular phylogenetics and phylogeography of Buarremon brush-finches (Aves, Emberizidae). Molecular phylogenetics and evolution, 44(3), 993-1016. Capurucho, J. M. G., Cornelius, C., Borges, S. H., Cohn‐Haft, M., Aleixo, A., Metzger, J. P., & Ribas, C. C. 2013. Combining phylogeography and landscape genetics of Xenopipo atronitens (Aves: Pipridae), a white sand campina specialist, to understand Pleistocene landscape evolution in Amazonia. Biological Claramunt, S., Derryberry, E. P., Remsen, J. V., & Brumfield, R. T. 2012. High dispersal ability inhibits speciation in a continental radiation of passerine birds. Proceedings of the Royal Society of London B: Biological Sciences, 279(1733), 1567-1574.Journal of the Linnean Society, 110(1), 60-76. d’Horta, F. M., Cuervo, A. M., Ribas, C. C., Brumfield, R. T., & Miyaki, C. Y. 2012. Phylogeny and comparative phylogeography of Sclerurus (Aves: Furnariidae) reveal constant and cryptic diversification in an old radiation of rain forest understorey specialists. Journal of Biogeography (J. Biogeogr.), 40, 3749. Drummond, A. J., Suchard, M. A., Xie, D., & Rambaut, A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular biology and evolution, 29(8), 1969-1973. Drummond, A. J., B. Ashton, M. Cheung, J. Heled, M. Kearse, R. Moir, S. Stones-Havas, T. Thierer, and A. Wilson. 2008. Geneious v4.0, Availaible from http://www.genious.com. Drummond, A. J. & A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis sampling trees. BMC Evolutionary Biology 7:214. Excoffier, L., Laval, G., & Schneider, S. 2005. Arlequin version. 3.0: an integrated software package for population genetics data analysis, Evol. Bioinform. 1 47–50. Online.[PMC free article][PubMed]. Fernandes, A., Cohn-Haft, M., Hrbek, T., & Farias, I. 2014. Rivers acting as barriers for bird dispersal in the Amazon. Revista Brasileira de Ornitologia-Brazilian Journal of Ornithology, 22(4), 363-373. Fernandes, A. M., Gonzalez, J., Wink, M., & Aleixo, A. 2013. Multilocus phylogeography of the Wedgebilled Woodcreeper Glyphorynchus spirurus (Aves, Furnariidae) in lowland Amazonia: Widespread cryptic diversity and paraphyly reveal a complex diversification pattern. Molecular phylogenetics and evolution, 66(1), 270-282. Gregory-Wodzicki, K. M. 2000. Uplift history of the Central and Northern Andes: a review. Geological Society of America Bulletin, 112(7), 1091-1105. Gutiérrez-Pinto, N., Cuervo, A. M., Miranda, J., Pérez-Emán, J. L., Brumfield, R. T., & Cadena, C. D. 2012. Non-monophyly and deep genetic differentiation across low-elevation barriers in a Neotropical montane bird (Basileuterus tristriatus; Aves: Parulidae). Molecular Phylogenetics and Evolution, 64(1), 156-165. Haffer, J. 1969. Speciation in Amazonian forest birds. Science, 165(3889), 131-137. Haffer, J. 1967. Notas zoogeográficas sobre las avifaunas de las regiones no forestadas de Sudamérica noroccidental. El Hornero, 10(04), 315-333. Hernández-Camacho, J., Hurtado, A., Ortiz, R., & Walschburger, T. 1992. Unidades biogeográficas de Colombia. La diversidad biológica de Iberoamérica. (G. Halffter, ed.). Acta Zoológica Mexicana. Instituto de Ecología, AC México, 105-151. Kearns, A. M., Joseph, L., Edwards, S. V., & Double, M. C. 2009. Inferring the phylogeography and evolutionary history of the splendid fairy‐wren Malurus splendens from mitochondrial DNA and spectrophotometry. Journal of Avian Biology, 40(1), 7-17. Maldonado-Chaparro, A., Bernal-Parra, L. M., Forero-Acosta, G., & Ruiz-Garcia, M. 2011. Estructura genética de un grupo de capibaras, Hydrochoerus hydrochaeris (Rodentia: Hydrocheridae) en los Llanos orientales colombianos.Revista de Biología Tropical, 59(4), 1777-1793. Marantz, C. A., Aleixo, A., Bevier, L. R., & Patten, M. A. 2003. Family Dendrocolaptidae (Woodcreepers). Handbook of the birds of the world, 8, 358-447.McNish, T. 2007. Las aves de los llanos de la Orinoquia. M&b Producciones Y Servicio. Bogotá, Colombia. Marchant, R., Berrío, J. C., Behling, H., Boom, A., & Hooghiemstra, H. 2006. Colombian dry moist forest transitions in the Llanos Orientales-a comparison of model and pollen-based biome reconstructions. Palaeogeography, Palaeoclimatology, Palaeoecology, 234(1), 28-44. McCormack, J. E., Maley, J. M., Hird, S. M., Derryberry, E. P., Graves, G. R., & Brumfield, R. T. 2012. Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences. Molecular Phylogenetics and Evolution, 62(1), 397-406. McNish, T. 2007. Las aves de los llanos de la Orinoquia. M&b Producciones Y Servicio. Bogotá, Colombia. Milá, B., Tavares, E. S., Saldaña, A. M., Karubian, J., Smith, T. B., & Baker, A. J. 2012. A transAmazonian screening of mtDNA reveals deep intraspecific divergence in forest birds and suggests a vast underestimation of species diversity. PloS one, 7(7), e40541. Miller, MJ, Lelevier, MJ, Bermingham, E., Klicka, JT, Escalante, P., y Winker, K. 2011. Filogeografía del colibrí de cola rufa (Amazilia tzacatl). El Cóndor ,113 (4), 806-816. Miller, M. A., Pfeiffer, W., & Schwartz, T. 2010. ―Creating the CIPRES Science Gateway for inference of large phylogenetic trees‖ in Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, LA pp. 1-8) Miller, M. P. 2005. Alleles In Space: Computer software for the joint analysis of interindividual spatial and genetic information. Journal of Heredity 96:722-724. Minin, V.N., Bloomquist, E.W., Suchard, M.A. 2008. Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol. Biol. Evol. 25, 1459–1471. Moore, R. P., Robinson, W. D., Lovette, I. J., & Robinson, T. R. (2008). Experimental evidence for extreme dispersal limitation in tropical forest birds. Ecology letters, 11(9), 960-968. Moritz, C., & Faith, D. P. 1998. Comparative phylogeography and the identification of genetically divergent areas for conservation. Molecular Ecology, 7(4), 419-429. Naka, L. N., Bechtoldt, C. L., Henriques, L. M. P., & Brumfield, R. T. 2012. The role of physical barriers in the location of avian suture zones in the Guiana Shield, northern Amazonia. The American Naturalist, 179(4), E115-E132. Nylander, J.A.A. 2004. MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala. Orneals, J. F., González, C., los Monteros, A. E., Rodríguez‐Gómez, F., & García‐Feria, L. M. 2014. In and out of Mesoamerica: temporal divergence of Amazilia hummingbirds pre‐dates the orthodox account of the completion of the Isthmus of Panama. Journal of Biogeography, 41(1), 168-181. Phelps W. H. & Phelps W. H. Jr. 1949. Seven new subspecies of birds from Venezuela proceeding of the biological society of Washington 62, 185-196. Posada, D., K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818. Raikow, R. J. 1994. A phylogeny of the woodcreepers (Dendrocolaptinae).The Auk, 104-114. Rambaut, A., Drummond, A.J. 2007. Tracer v1.4. Ramírez‐Barahona, S., & Eguiarte, L. E. 2013. The role of glacial cycles in promoting genetic diversity in the Neotropics: the case of cloud forests during the Last Glacial Maximum. Ecology and Evolution, 3(3), 725-738. Remsen, J. V. 2003. Family furnariidae (ovenbirds). Handbook of the birds of the world, 8, 162-357. Ribas, C. C., Aleixo, A., Nogueira, A. C., Miyaki, C. Y., & Cracraft, J. 2012. A palaeobiogeographic model for biotic diversification within Amazonia over the past three million years. Proceedings of the Royal Society B: Biological Sciences, 279(1729), 681.Rull, V. (2011). Neotropical biodiversity: timing and potential drivers. Trends in Ecology & Evolution, 26(10), 508-513. Ribas, C. C., Moyle, R. G., Miyaki, C. Y., & Cracraft, J. 2007. The assembly of montane biotas: linking Andean tectonics and climatic oscillations to independent regimes of diversification in Pionus parrots. Proceedings of the Royal Society of London B: Biological Sciences, 274(1624), 2399-2408. Rozas, J., P. Librado, J. C. Sánchez-DelBarrio. 2009. DNA sequence polymorphism V 4.9, Available at http://www.ub.es./dnasp. Sánchez-Cuervo, A. M., Aide, T. M., Clark, M. L., & Etter, A. 2012. Land cover change in Colombia: surprising forest recovery trends between 2001 and 2010. PLoS One, 7(8), e43943. Smith, B. T., McCormack, J. E., Cuervo, A. M., Hickerson, M. J., Aleixo, A., Cadena, C. D. PérezEmám J., Burney C. W., Xie X., Harvey M. G., Faircloth B. C., Glenn T. C., Derrybery E. P., Prejean J., Campos S., and Brumfield R. T. 2014. The drivers of tropical speciation.Nature, 515(7527), 406-409. Smith, B. T., A. Amei, and J. Klicka. 2012. Evaluating the role of contracting and expanding rainforest in initiating cycles of speciation across the Isthmus of Panama. Procedings of the Royal Society of London B. Sorenson, M. D., Ast, J. C., Dimcheff, D. E., Yuri, T., & Mindell, D. P. 1999. Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Molecular phylogenetics and evolution, 12(2), 105-114. Swofford, D. L. 2003. PAUP* 4.0b10: Phylogenetic Analysis using Parsimony (* and other methods). Sinnauer, Sunderland. Tavares, E. S., Gonçalves, P., Miyaki, C. Y., & Baker, A. J. 2011. DNA barcode detects high genetic structure within Neotropical bird species. PLoS One, 6(12), e28543. Thom, G., & Aleixo, A. 2015. Cryptic speciation in the white-shouldered antshrike (Thamnophilus aethiops, Aves–Thamnophilidae): The tale of a transcontinental radiation across rivers in lowland Amazonia and the northeastern Atlantic Forest. Molecular phylogenetics and evolution, 82, 95-110. Weir, J. T., Faccio, M. S., Pulido‐Santacruz, P., Barrera‐Guzmán, A. O., & Aleixo, A. 2015. Hybridization in headwater regions, and the role of rivers as drivers of speciation in Amazonian birds. Evolution, 69(7), 1823-1834. Weir, J. T., & Price, M. 2011. Andean uplift promotes lowland speciation through vicariance and dispersal in Dendrocincla woodcreepers. Molecular Ecology, 20(21), 4550-4563. Weir, J. T., & Schluter, D. 2008. Calibrating the avian molecular clock.Molecular ecology, 17(10), 23212328. Wijmstra, T. A., & Van der Hammen, T. 1966. Palynological data on the history of tropical savannas in. Leidse Geologische Mededelingen, 38, 71. Willis, E. O. 1972. The behavior of Plain-brown Woodcreepers, Dendrocincla fuliginosa. The Wilson Bulletin, 377-420. Zink, R. M., & Barrowclough, G. F. 2008. Mitochondrial DNA under siege in avian phylogeography. Molecular ecology, 17(9), 2107-2121. Zink, R. M., Rising, J. D., Mockford, S., Horn, A. G., Wright, J. M., Leonard, M., & Westberg, M. C. 2005. Mitochondrial DNA variation, species limits, and rapid evolution of plumage coloration and size in the Savannah Sparrow. The condor, 107(1), 21-28. Zink, R. M., Kessen, A. E., Line, T. V., & Blackwell-Rago, R. C. 2001. Comparative phylogeography of some aridland bird species. The Condor, 103(1), 1-10. |
| dc.relation.indexed.spa.fl_str_mv |
N/A |
| dc.rights.spa.fl_str_mv |
Derechos Reservados - Universidad de los Llanos, 2016 |
| dc.rights.uri.spa.fl_str_mv |
https://creativecommons.org/licenses/by-nc-nd/4.0/ |
| dc.rights.license.spa.fl_str_mv |
Atribución-NoComercial-SinDerivadas 4.0 Internacional (CC BY-NC-ND 4.0) |
| dc.rights.accessrights.spa.fl_str_mv |
info:eu-repo/semantics/openAccess |
| dc.rights.coar.spa.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
| rights_invalid_str_mv |
Derechos Reservados - Universidad de los Llanos, 2016 https://creativecommons.org/licenses/by-nc-nd/4.0/ Atribución-NoComercial-SinDerivadas 4.0 Internacional (CC BY-NC-ND 4.0) http://purl.org/coar/access_right/c_abf2 |
| eu_rights_str_mv |
openAccess |
| dc.format.extent.spa.fl_str_mv |
47 páginas |
| dc.format.mimetype.spa.fl_str_mv |
application/pdf |
| dc.publisher.spa.fl_str_mv |
Universidad de los Llanos |
| dc.publisher.faculty.spa.fl_str_mv |
Facultad de Ciencias Básicas e Ingeniería |
| dc.publisher.place.spa.fl_str_mv |
Villavicencio |
| institution |
Universidad de los Llanos |
| bitstream.url.fl_str_mv |
https://dspace7-unillanos.metacatalogo.org/bitstreams/99c85f83-b74e-4f15-813b-f7db147565bc/download https://dspace7-unillanos.metacatalogo.org/bitstreams/1db29ca5-751e-49f2-ba5f-710ff1cfd657/download https://dspace7-unillanos.metacatalogo.org/bitstreams/1ffccc77-ebc8-42e7-a3a0-a935caa40626/download https://dspace7-unillanos.metacatalogo.org/bitstreams/317077e5-6807-4bbb-ad12-919748c26ca6/download https://dspace7-unillanos.metacatalogo.org/bitstreams/7d369bf3-7c1a-432d-a0c2-262613a0311e/download https://dspace7-unillanos.metacatalogo.org/bitstreams/931aa0bf-1e4b-4d4b-b7d7-aa667ffae408/download https://dspace7-unillanos.metacatalogo.org/bitstreams/3710036c-03b6-4824-aac6-fb64bcda14c7/download https://dspace7-unillanos.metacatalogo.org/bitstreams/5fffbeb6-3fc3-4a95-9b13-0e6dc9464a2f/download https://dspace7-unillanos.metacatalogo.org/bitstreams/f1bb0ba1-ddba-4cdd-9374-c8a389b3f74a/download https://dspace7-unillanos.metacatalogo.org/bitstreams/c79d1c52-458a-40ec-a298-02cc1e11e2a0/download |
| bitstream.checksum.fl_str_mv |
dcec8574208b562384e4984518674760 0f557e005cbd63bd65d0ee8bbdc30ac1 92f47d5a603d27ae95ae06fe97d15f13 f7c6e382a43d2577a35b71202b6dc0cd d1235e32beed19a3a679d3ef594f70b6 6abdaca79c1abef3f1031ccd5af4fdfc 68b329da9893e34099c7d8ad5cb9c940 ee4b6e3897774227c1d8515786726c60 7f7750c18bf6f41341672d1a1e0de6fa 444715f7862c3fec44347e50838d5c1a |
| bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 MD5 MD5 MD5 MD5 MD5 MD5 |
| repository.name.fl_str_mv |
Repositorio Universidad de Los Llanos |
| repository.mail.fl_str_mv |
repositorio@unillanos.edu.co |
| _version_ |
1808491003489812480 |
| spelling |
Avendaño, Jorge Enrique819242b535e18c7569585a2ae8a551d3Diaz Cardenas, Jessica Jasbleidyd17a6896f087a63b427cd8f51b8ce60e2023-09-27T14:29:07Z2023-09-27T14:29:07Z2016Diaz Cardenas, J. E. (2016). Evaluación preliminar de la estructura filogeográfica del Trepador Pardo (Dendrocincla fuliginosa, Aves: Furnariidae) en la Orinoquia Colombiana [Trabajo de grado, Universidad de los Llanos]. Repositorio digital Universidad de los Llanos.https://repositorio.unillanos.edu.co/handle/001/3029Universidad de los LlanosRepositorio digital Universidad de los Llanoshttps://repositorio.unillanos.edu.co/Figuras, tablas, símbolos y abreviaturas.La mayoría de estudios sobre diversificación y diferenciación poblacional de las aves Neotropicales se han enfocado en ecosistemas húmedos Amazónicos, sin embargo, un entendimiento completo de los procesos y tiempos de diferenciación de las aves Amazónicas debe incluir poblaciones que se encuentren en regiones boscosas y de vegetación abierta circundantes. La cuenca del Orinoco, ubicada al norte del Amazonas, es una región pobremente estudiada a nivel de su historia y diferenciación genética. En este estudio, evaluamos la estructura filogeográfica de Dendrocincla fuliginosa en la Orinoquia colombiana, para lo cual amplificamos el gen mitocondrial ND2. A nivel de especie, las poblaciones de la Orinoquia presentan baja estructura genética, sin embargo, se presentan dos haplogrupos distintivos: uno de afinidad trans-Andina que se distribuye principalmente en Arauca-Apure (clado barinensis), y otro de mayor distribución en la Orinoquia (clado phaeochroa).Most studies of diversification and population differentiation of Neotropical birds have focused on Amazonian humid ecosystems, however, a complete understanding of the processes and differentiation times of Amazonian birds must include populations that are in surrounding wooded areas and vegetation open. The Orinoco basin located to the north of the Amazon is a region poorly studied in terms of its history and genetic differentiation. We evaluated the phylogeographic structure of Dendrocincla fuliginosa in the Colombian Orinoco region, for which mitochondrial ND2 gene amplify. At the level of species, we found low genetic structure in populations of the Orinoco region, however, two distinctive groups are presented: one of trans-Andean affinity is mainly distributed in Arauca-Apure (barinensis clade), and other of greater distribution in the Orinoco region (phaeochroa clade).Lista de figuras. – Lista de tablas. -- Lista de símbolos y abreviaturas. -- Planteamiento del problema. – Hipótesis. – Objetivos. – General. – Específicos. – Justificación. -- Marco teórico. -- Metodología y área de estudio. -- Muestreo taxonómico y geográfico. -- Aislamiento del ADN, amplificación y secuenciación. -- Análisis filogenéticos. -- Análisis de diversidad nucleotídica y demografía histórica. – Resultados. -- Análisis filogenéticos. -- Análisis filogeográficos. -- Demografía histórica. – Discusión. -- Relaciones filogenéticas y tiempos de divergencia. -- Estructura filogeográfica en la Orinoquia colombiana. – Conclusiones. – Bibliografía.PregradoBiólogoBiología47 páginasapplication/pdfspaUniversidad de los LlanosFacultad de Ciencias Básicas e IngenieríaVillavicencioDerechos Reservados - Universidad de los Llanos, 2016https://creativecommons.org/licenses/by-nc-nd/4.0/Atribución-NoComercial-SinDerivadas 4.0 Internacional (CC BY-NC-ND 4.0)info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Evaluación preliminar de la estructura filogeográfica del Trepador Pardo (Dendrocincla fuliginosa, Aves: Furnariidae) en la Orinoquía colombianaTrabajo de grado - Pregradoinfo:eu-repo/semantics/bachelorThesisinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_7a1fTexthttps://purl.org/redcol/resource_type/TPhttp://purl.org/coar/version/c_970fb48d4fbd8a85Aldana, A., & Mitchley, J. 2013. Protected Areas legislation and the conservation of the Colombian Orinoco Basin natural ecosystems. Nature Conservation, 4, 15.Aleixo, A. 2004. Historical diversification of a terra-firme forest bird superspecies: a phylogeographic perspective on the role of different hypotheses of Amazonian diversification. Evolution, 58(6), 13031317.Arbeláez-Cortés, E. 2013. Knowledge of Colombian biodiversity: published and indexed. Biodiversity and Conservation, 22(12), 2875-2906.Arbogast, B. S., & Kenagy, G. J. 2001. Comparative phylogeography as an integrative approach to historical biogeography. Journal of Biogeography, 28(7), 819-825.Avise, J. C., Arnold, J., Ball, R. M., Bermingham, E., Lamb, T., Neigel, J. E., ... & Saunders, N. C. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual review of ecology and systematics, 489-522.Bandelt, H.-J., Forster, P., Rohl, A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16, 37–48.Bates, J. M., Cadena, C. D., Tello, J. G., & Brumfield, R. T. 2008. Diversification in the Neotropics: phylogenetic patterns and historical processes. Ornitologia Neotropical, 19, 427-432.Bates, J. M., Tello, J. G., & Silva, J. M. C. 2003. Initial assessment of genetic diversity in ten bird species of South American Cerrado. Studies on Neotropical Fauna and Environment, 38(2), 87-94.Berrio, J. C., Hooghiemstra, H., Behling, H., Botero, P., & Van der Borg, K. 2002. Late-Quaternary savanna history of the Colombian Llanos Orientales from Lagunas Chenevo and Mozambique: a transect synthesis. The Holocene, 12(1), 35-48.Brumfield, R. T., & Capparella, A. P. 1996. Historical diversification of birds in northwestern South America: a molecular perspective on the role of vicariant events. Evolution, 1607-1624.Burg, T. M., & Croxall, J. P. 2001. Global relationships amongst black‐browed and grey‐headed albatrosses: analysis of population structure using mitochondrial DNA and microsatellites. Molecular Ecology, 10(11), 2647-2660.Burney, C. W., & Brumfield, R. T. 2009. Ecology predicts levels of genetic differentiation in Neotropical birds. The American Naturalist, 174(3), 358-368.Cadena, C. D., Klicka, J., & Ricklefs, R. E. 2007. Evolutionary differentiation in the Neotropical montane region: molecular phylogenetics and phylogeography of Buarremon brush-finches (Aves, Emberizidae). Molecular phylogenetics and evolution, 44(3), 993-1016.Capurucho, J. M. G., Cornelius, C., Borges, S. H., Cohn‐Haft, M., Aleixo, A., Metzger, J. P., & Ribas, C. C. 2013. Combining phylogeography and landscape genetics of Xenopipo atronitens (Aves: Pipridae), a white sand campina specialist, to understand Pleistocene landscape evolution in Amazonia. BiologicalClaramunt, S., Derryberry, E. P., Remsen, J. V., & Brumfield, R. T. 2012. High dispersal ability inhibits speciation in a continental radiation of passerine birds. Proceedings of the Royal Society of London B: Biological Sciences, 279(1733), 1567-1574.Journal of the Linnean Society, 110(1), 60-76.d’Horta, F. M., Cuervo, A. M., Ribas, C. C., Brumfield, R. T., & Miyaki, C. Y. 2012. Phylogeny and comparative phylogeography of Sclerurus (Aves: Furnariidae) reveal constant and cryptic diversification in an old radiation of rain forest understorey specialists. Journal of Biogeography (J. Biogeogr.), 40, 3749.Drummond, A. J., Suchard, M. A., Xie, D., & Rambaut, A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular biology and evolution, 29(8), 1969-1973.Drummond, A. J., B. Ashton, M. Cheung, J. Heled, M. Kearse, R. Moir, S. Stones-Havas, T. Thierer, and A. Wilson. 2008. Geneious v4.0, Availaible from http://www.genious.com.Drummond, A. J. & A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis sampling trees. BMC Evolutionary Biology 7:214.Excoffier, L., Laval, G., & Schneider, S. 2005. Arlequin version. 3.0: an integrated software package for population genetics data analysis, Evol. Bioinform. 1 47–50. Online.[PMC free article][PubMed].Fernandes, A., Cohn-Haft, M., Hrbek, T., & Farias, I. 2014. Rivers acting as barriers for bird dispersal in the Amazon. Revista Brasileira de Ornitologia-Brazilian Journal of Ornithology, 22(4), 363-373.Fernandes, A. M., Gonzalez, J., Wink, M., & Aleixo, A. 2013. Multilocus phylogeography of the Wedgebilled Woodcreeper Glyphorynchus spirurus (Aves, Furnariidae) in lowland Amazonia: Widespread cryptic diversity and paraphyly reveal a complex diversification pattern. Molecular phylogenetics and evolution, 66(1), 270-282.Gregory-Wodzicki, K. M. 2000. Uplift history of the Central and Northern Andes: a review. Geological Society of America Bulletin, 112(7), 1091-1105.Gutiérrez-Pinto, N., Cuervo, A. M., Miranda, J., Pérez-Emán, J. L., Brumfield, R. T., & Cadena, C. D. 2012. Non-monophyly and deep genetic differentiation across low-elevation barriers in a Neotropical montane bird (Basileuterus tristriatus; Aves: Parulidae). Molecular Phylogenetics and Evolution, 64(1), 156-165.Haffer, J. 1969. Speciation in Amazonian forest birds. Science, 165(3889), 131-137.Haffer, J. 1967. Notas zoogeográficas sobre las avifaunas de las regiones no forestadas de Sudamérica noroccidental. El Hornero, 10(04), 315-333.Hernández-Camacho, J., Hurtado, A., Ortiz, R., & Walschburger, T. 1992. Unidades biogeográficas de Colombia. La diversidad biológica de Iberoamérica. (G. Halffter, ed.). Acta Zoológica Mexicana. Instituto de Ecología, AC México, 105-151.Kearns, A. M., Joseph, L., Edwards, S. V., & Double, M. C. 2009. Inferring the phylogeography and evolutionary history of the splendid fairy‐wren Malurus splendens from mitochondrial DNA and spectrophotometry. Journal of Avian Biology, 40(1), 7-17.Maldonado-Chaparro, A., Bernal-Parra, L. M., Forero-Acosta, G., & Ruiz-Garcia, M. 2011. Estructura genética de un grupo de capibaras, Hydrochoerus hydrochaeris (Rodentia: Hydrocheridae) en los Llanos orientales colombianos.Revista de Biología Tropical, 59(4), 1777-1793.Marantz, C. A., Aleixo, A., Bevier, L. R., & Patten, M. A. 2003. Family Dendrocolaptidae (Woodcreepers). Handbook of the birds of the world, 8, 358-447.McNish, T. 2007. Las aves de los llanos de la Orinoquia. M&b Producciones Y Servicio. Bogotá, Colombia.Marchant, R., Berrío, J. C., Behling, H., Boom, A., & Hooghiemstra, H. 2006. Colombian dry moist forest transitions in the Llanos Orientales-a comparison of model and pollen-based biome reconstructions. Palaeogeography, Palaeoclimatology, Palaeoecology, 234(1), 28-44.McCormack, J. E., Maley, J. M., Hird, S. M., Derryberry, E. P., Graves, G. R., & Brumfield, R. T. 2012. Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences. Molecular Phylogenetics and Evolution, 62(1), 397-406.McNish, T. 2007. Las aves de los llanos de la Orinoquia. M&b Producciones Y Servicio. Bogotá, Colombia.Milá, B., Tavares, E. S., Saldaña, A. M., Karubian, J., Smith, T. B., & Baker, A. J. 2012. A transAmazonian screening of mtDNA reveals deep intraspecific divergence in forest birds and suggests a vast underestimation of species diversity. PloS one, 7(7), e40541.Miller, MJ, Lelevier, MJ, Bermingham, E., Klicka, JT, Escalante, P., y Winker, K. 2011. Filogeografía del colibrí de cola rufa (Amazilia tzacatl). El Cóndor ,113 (4), 806-816.Miller, M. A., Pfeiffer, W., & Schwartz, T. 2010. ―Creating the CIPRES Science Gateway for inference of large phylogenetic trees‖ in Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, LA pp. 1-8)Miller, M. P. 2005. Alleles In Space: Computer software for the joint analysis of interindividual spatial and genetic information. Journal of Heredity 96:722-724.Minin, V.N., Bloomquist, E.W., Suchard, M.A. 2008. Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol. Biol. Evol. 25, 1459–1471.Moore, R. P., Robinson, W. D., Lovette, I. J., & Robinson, T. R. (2008). Experimental evidence for extreme dispersal limitation in tropical forest birds. Ecology letters, 11(9), 960-968.Moritz, C., & Faith, D. P. 1998. Comparative phylogeography and the identification of genetically divergent areas for conservation. Molecular Ecology, 7(4), 419-429.Naka, L. N., Bechtoldt, C. L., Henriques, L. M. P., & Brumfield, R. T. 2012. The role of physical barriers in the location of avian suture zones in the Guiana Shield, northern Amazonia. The American Naturalist, 179(4), E115-E132.Nylander, J.A.A. 2004. MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala.Orneals, J. F., González, C., los Monteros, A. E., Rodríguez‐Gómez, F., & García‐Feria, L. M. 2014. In and out of Mesoamerica: temporal divergence of Amazilia hummingbirds pre‐dates the orthodox account of the completion of the Isthmus of Panama. Journal of Biogeography, 41(1), 168-181.Phelps W. H. & Phelps W. H. Jr. 1949. Seven new subspecies of birds from Venezuela proceeding of the biological society of Washington 62, 185-196.Posada, D., K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.Raikow, R. J. 1994. A phylogeny of the woodcreepers (Dendrocolaptinae).The Auk, 104-114.Rambaut, A., Drummond, A.J. 2007. Tracer v1.4.Ramírez‐Barahona, S., & Eguiarte, L. E. 2013. The role of glacial cycles in promoting genetic diversity in the Neotropics: the case of cloud forests during the Last Glacial Maximum. Ecology and Evolution, 3(3), 725-738.Remsen, J. V. 2003. Family furnariidae (ovenbirds). Handbook of the birds of the world, 8, 162-357.Ribas, C. C., Aleixo, A., Nogueira, A. C., Miyaki, C. Y., & Cracraft, J. 2012. A palaeobiogeographic model for biotic diversification within Amazonia over the past three million years. Proceedings of the Royal Society B: Biological Sciences, 279(1729), 681.Rull, V. (2011). Neotropical biodiversity: timing and potential drivers. Trends in Ecology & Evolution, 26(10), 508-513.Ribas, C. C., Moyle, R. G., Miyaki, C. Y., & Cracraft, J. 2007. The assembly of montane biotas: linking Andean tectonics and climatic oscillations to independent regimes of diversification in Pionus parrots. Proceedings of the Royal Society of London B: Biological Sciences, 274(1624), 2399-2408.Rozas, J., P. Librado, J. C. Sánchez-DelBarrio. 2009. DNA sequence polymorphism V 4.9, Available at http://www.ub.es./dnasp.Sánchez-Cuervo, A. M., Aide, T. M., Clark, M. L., & Etter, A. 2012. Land cover change in Colombia: surprising forest recovery trends between 2001 and 2010. PLoS One, 7(8), e43943.Smith, B. T., McCormack, J. E., Cuervo, A. M., Hickerson, M. J., Aleixo, A., Cadena, C. D. PérezEmám J., Burney C. W., Xie X., Harvey M. G., Faircloth B. C., Glenn T. C., Derrybery E. P., Prejean J., Campos S., and Brumfield R. T. 2014. The drivers of tropical speciation.Nature, 515(7527), 406-409.Smith, B. T., A. Amei, and J. Klicka. 2012. Evaluating the role of contracting and expanding rainforest in initiating cycles of speciation across the Isthmus of Panama. Procedings of the Royal Society of London B.Sorenson, M. D., Ast, J. C., Dimcheff, D. E., Yuri, T., & Mindell, D. P. 1999. Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Molecular phylogenetics and evolution, 12(2), 105-114.Swofford, D. L. 2003. PAUP* 4.0b10: Phylogenetic Analysis using Parsimony (* and other methods). Sinnauer, Sunderland.Tavares, E. S., Gonçalves, P., Miyaki, C. Y., & Baker, A. J. 2011. DNA barcode detects high genetic structure within Neotropical bird species. PLoS One, 6(12), e28543.Thom, G., & Aleixo, A. 2015. Cryptic speciation in the white-shouldered antshrike (Thamnophilus aethiops, Aves–Thamnophilidae): The tale of a transcontinental radiation across rivers in lowland Amazonia and the northeastern Atlantic Forest. Molecular phylogenetics and evolution, 82, 95-110.Weir, J. T., Faccio, M. S., Pulido‐Santacruz, P., Barrera‐Guzmán, A. O., & Aleixo, A. 2015. Hybridization in headwater regions, and the role of rivers as drivers of speciation in Amazonian birds. Evolution, 69(7), 1823-1834.Weir, J. T., & Price, M. 2011. Andean uplift promotes lowland speciation through vicariance and dispersal in Dendrocincla woodcreepers. Molecular Ecology, 20(21), 4550-4563.Weir, J. T., & Schluter, D. 2008. Calibrating the avian molecular clock.Molecular ecology, 17(10), 23212328.Wijmstra, T. A., & Van der Hammen, T. 1966. Palynological data on the history of tropical savannas in. Leidse Geologische Mededelingen, 38, 71.Willis, E. O. 1972. The behavior of Plain-brown Woodcreepers, Dendrocincla fuliginosa. The Wilson Bulletin, 377-420.Zink, R. M., & Barrowclough, G. F. 2008. Mitochondrial DNA under siege in avian phylogeography. Molecular ecology, 17(9), 2107-2121.Zink, R. M., Rising, J. D., Mockford, S., Horn, A. G., Wright, J. M., Leonard, M., & Westberg, M. C. 2005. Mitochondrial DNA variation, species limits, and rapid evolution of plumage coloration and size in the Savannah Sparrow. The condor, 107(1), 21-28.Zink, R. M., Kessen, A. E., Line, T. V., & Blackwell-Rago, R. C. 2001. Comparative phylogeography of some aridland bird species. The Condor, 103(1), 1-10.N/ADiversificación biológicaSotobosqueDistritos biogeográficosRíosEstructura genéticaUnderstoryBiogeographicals districtsRiversGenetic structurePublicationORIGINAL1121893881.pdf1121893881.pdfTrabajo de gradoapplication/pdf1304808https://dspace7-unillanos.metacatalogo.org/bitstreams/99c85f83-b74e-4f15-813b-f7db147565bc/downloaddcec8574208b562384e4984518674760MD51Anexo 1Anexo 1Artículoapplication/pdf1697123https://dspace7-unillanos.metacatalogo.org/bitstreams/1db29ca5-751e-49f2-ba5f-710ff1cfd657/download0f557e005cbd63bd65d0ee8bbdc30ac1MD53Anexo 2Anexo 2Carta de Autorizaciónapplication/pdf411677https://dspace7-unillanos.metacatalogo.org/bitstreams/1ffccc77-ebc8-42e7-a3a0-a935caa40626/download92f47d5a603d27ae95ae06fe97d15f13MD52LICENSElicense.txtlicense.txttext/plain; charset=utf-8414https://dspace7-unillanos.metacatalogo.org/bitstreams/317077e5-6807-4bbb-ad12-919748c26ca6/downloadf7c6e382a43d2577a35b71202b6dc0cdMD54TEXT1121893881.pdf.txt1121893881.pdf.txtExtracted texttext/plain88285https://dspace7-unillanos.metacatalogo.org/bitstreams/7d369bf3-7c1a-432d-a0c2-262613a0311e/downloadd1235e32beed19a3a679d3ef594f70b6MD55Anexo 1.txtAnexo 1.txtExtracted texttext/plain82014https://dspace7-unillanos.metacatalogo.org/bitstreams/931aa0bf-1e4b-4d4b-b7d7-aa667ffae408/download6abdaca79c1abef3f1031ccd5af4fdfcMD57Anexo 2.txtAnexo 2.txtExtracted texttext/plain1https://dspace7-unillanos.metacatalogo.org/bitstreams/3710036c-03b6-4824-aac6-fb64bcda14c7/download68b329da9893e34099c7d8ad5cb9c940MD59THUMBNAIL1121893881.pdf.jpg1121893881.pdf.jpgGenerated Thumbnailimage/jpeg6415https://dspace7-unillanos.metacatalogo.org/bitstreams/5fffbeb6-3fc3-4a95-9b13-0e6dc9464a2f/downloadee4b6e3897774227c1d8515786726c60MD56Anexo 1.jpgAnexo 1.jpgGenerated Thumbnailimage/jpeg16256https://dspace7-unillanos.metacatalogo.org/bitstreams/f1bb0ba1-ddba-4cdd-9374-c8a389b3f74a/download7f7750c18bf6f41341672d1a1e0de6faMD58Anexo 2.jpgAnexo 2.jpgGenerated Thumbnailimage/jpeg13892https://dspace7-unillanos.metacatalogo.org/bitstreams/c79d1c52-458a-40ec-a298-02cc1e11e2a0/download444715f7862c3fec44347e50838d5c1aMD510001/3029oai:dspace7-unillanos.metacatalogo.org:001/30292024-04-17 16:40:07.798https://creativecommons.org/licenses/by-nc-nd/4.0/Derechos Reservados - Universidad de los Llanos, 2016open.accesshttps://dspace7-unillanos.metacatalogo.orgRepositorio Universidad de Los Llanosrepositorio@unillanos.edu.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 |