Potential compound from herbal food of rhizoma polygonati for treatment of COVID-19 analyzed by network pharmacology and molecular docking tech- nology

Rhizoma Polygonati (huangjing in Chinese, 黄精) is an herb-homology-food used as a component of alternative medicine treating COVID-19 in the current pandemic emergency in China but the mechanisms remain elusive. Here using TCMSP and Swiss Target Prediction databases to sort out the potential targets...

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Autores:
Tipo de recurso:
Article of investigation
Fecha de publicación:
2020
Institución:
Universidad de Bogotá Jorge Tadeo Lozano
Repositorio:
Expeditio: repositorio UTadeo
Idioma:
eng
OAI Identifier:
oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/14081
Acceso en línea:
https://doi.org/10.1016/j.jff.2020.104149
http://hdl.handle.net/20.500.12010/14081
Palabra clave:
Network Pharmacology
Rhizoma Polygonati
Molecular Docking
New coronavirus pneumonia
COVID-19
Síndrome respiratorio agudo grave
COVID-19
SARS-CoV-2
Coronavirus
Rights
License
Abierto (Texto Completo)
id UTADEO2_b67b2689fdb7587c8faa7d2b7b5509da
oai_identifier_str oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/14081
network_acronym_str UTADEO2
network_name_str Expeditio: repositorio UTadeo
repository_id_str
dc.title.spa.fl_str_mv Potential compound from herbal food of rhizoma polygonati for treatment of COVID-19 analyzed by network pharmacology and molecular docking tech- nology
title Potential compound from herbal food of rhizoma polygonati for treatment of COVID-19 analyzed by network pharmacology and molecular docking tech- nology
spellingShingle Potential compound from herbal food of rhizoma polygonati for treatment of COVID-19 analyzed by network pharmacology and molecular docking tech- nology
Network Pharmacology
Rhizoma Polygonati
Molecular Docking
New coronavirus pneumonia
COVID-19
Síndrome respiratorio agudo grave
COVID-19
SARS-CoV-2
Coronavirus
title_short Potential compound from herbal food of rhizoma polygonati for treatment of COVID-19 analyzed by network pharmacology and molecular docking tech- nology
title_full Potential compound from herbal food of rhizoma polygonati for treatment of COVID-19 analyzed by network pharmacology and molecular docking tech- nology
title_fullStr Potential compound from herbal food of rhizoma polygonati for treatment of COVID-19 analyzed by network pharmacology and molecular docking tech- nology
title_full_unstemmed Potential compound from herbal food of rhizoma polygonati for treatment of COVID-19 analyzed by network pharmacology and molecular docking tech- nology
title_sort Potential compound from herbal food of rhizoma polygonati for treatment of COVID-19 analyzed by network pharmacology and molecular docking tech- nology
dc.subject.spa.fl_str_mv Network Pharmacology
Rhizoma Polygonati
Molecular Docking
New coronavirus pneumonia
COVID-19
topic Network Pharmacology
Rhizoma Polygonati
Molecular Docking
New coronavirus pneumonia
COVID-19
Síndrome respiratorio agudo grave
COVID-19
SARS-CoV-2
Coronavirus
dc.subject.lemb.spa.fl_str_mv Síndrome respiratorio agudo grave
COVID-19
SARS-CoV-2
Coronavirus
description Rhizoma Polygonati (huangjing in Chinese, 黄精) is an herb-homology-food used as a component of alternative medicine treating COVID-19 in the current pandemic emergency in China but the mechanisms remain elusive. Here using TCMSP and Swiss Target Prediction databases to sort out the potential targets of the main chemical components and GenCLiP3, NCBI, and GeneCard databases to search for COVID-19 related targets, the chemical compound-target-pathway network was analyzed. Each component was molecularly docked with host cell target angiotensin converting enzyme II, SARS-CoV-2 targets Spike protein, RNA-dependent RNA polymerase, or 3CL hydrolase. Our results showed a higher affinity of the compound diosgenin and (+)-Syringaresinol-O-beta-D-glucoside binding to the three SARS-CoV-2 proteins compared to the other compounds tested. Thus, our data suggest that potential compounds in Rhizoma Polygonati may act on different targets and have a great potential in treatment of COVID-19.
publishDate 2020
dc.date.accessioned.none.fl_str_mv 2020-10-01T15:38:52Z
dc.date.available.none.fl_str_mv 2020-10-01T15:38:52Z
dc.date.created.none.fl_str_mv 2020
dc.type.local.spa.fl_str_mv Artículo
dc.type.coar.spa.fl_str_mv http://purl.org/coar/resource_type/c_2df8fbb1
format http://purl.org/coar/resource_type/c_2df8fbb1
dc.identifier.issn.spa.fl_str_mv 1756-4646
dc.identifier.other.spa.fl_str_mv https://doi.org/10.1016/j.jff.2020.104149
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/20.500.12010/14081
dc.identifier.doi.spa.fl_str_mv https://doi.org/10.1016/j.jff.2020.104149
identifier_str_mv 1756-4646
url https://doi.org/10.1016/j.jff.2020.104149
http://hdl.handle.net/20.500.12010/14081
dc.language.iso.spa.fl_str_mv eng
language eng
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.local.spa.fl_str_mv Abierto (Texto Completo)
rights_invalid_str_mv Abierto (Texto Completo)
http://purl.org/coar/access_right/c_abf2
dc.format.extent.spa.fl_str_mv 22 páginas
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Journal of Functional Foods
dc.source.spa.fl_str_mv reponame:Expeditio Repositorio Institucional UJTL
instname:Universidad de Bogotá Jorge Tadeo Lozano
instname_str Universidad de Bogotá Jorge Tadeo Lozano
institution Universidad de Bogotá Jorge Tadeo Lozano
reponame_str Expeditio Repositorio Institucional UJTL
collection Expeditio Repositorio Institucional UJTL
bitstream.url.fl_str_mv https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14081/2/license.txt
https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14081/3/Potential-compound-from-herbal-food-of-rhizoma-polygonati-fo_2020_Journal-of.pdf.jpg
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spelling 2020-10-01T15:38:52Z2020-10-01T15:38:52Z20201756-4646https://doi.org/10.1016/j.jff.2020.104149http://hdl.handle.net/20.500.12010/14081https://doi.org/10.1016/j.jff.2020.104149Rhizoma Polygonati (huangjing in Chinese, 黄精) is an herb-homology-food used as a component of alternative medicine treating COVID-19 in the current pandemic emergency in China but the mechanisms remain elusive. Here using TCMSP and Swiss Target Prediction databases to sort out the potential targets of the main chemical components and GenCLiP3, NCBI, and GeneCard databases to search for COVID-19 related targets, the chemical compound-target-pathway network was analyzed. Each component was molecularly docked with host cell target angiotensin converting enzyme II, SARS-CoV-2 targets Spike protein, RNA-dependent RNA polymerase, or 3CL hydrolase. Our results showed a higher affinity of the compound diosgenin and (+)-Syringaresinol-O-beta-D-glucoside binding to the three SARS-CoV-2 proteins compared to the other compounds tested. Thus, our data suggest that potential compounds in Rhizoma Polygonati may act on different targets and have a great potential in treatment of COVID-19.22 páginasapplication/pdfengJournal of Functional Foodsreponame:Expeditio Repositorio Institucional UJTLinstname:Universidad de Bogotá Jorge Tadeo LozanoNetwork PharmacologyRhizoma PolygonatiMolecular DockingNew coronavirus pneumoniaCOVID-19Síndrome respiratorio agudo graveCOVID-19SARS-CoV-2CoronavirusPotential compound from herbal food of rhizoma polygonati for treatment of COVID-19 analyzed by network pharmacology and molecular docking tech- nologyArtículohttp://purl.org/coar/resource_type/c_2df8fbb1Abierto (Texto Completo)http://purl.org/coar/access_right/c_abf2Mu, ChenglinSheng, YifanWang, QianAmin, AmrLi, XugangXie, YingqiuLICENSElicense.txtlicense.txttext/plain; charset=utf-82938https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14081/2/license.txtabceeb1c943c50d3343516f9dbfc110fMD52open accessTHUMBNAILPotential-compound-from-herbal-food-of-rhizoma-polygonati-fo_2020_Journal-of.pdf.jpgPotential-compound-from-herbal-food-of-rhizoma-polygonati-fo_2020_Journal-of.pdf.jpgIM Thumbnailimage/jpeg11267https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14081/3/Potential-compound-from-herbal-food-of-rhizoma-polygonati-fo_2020_Journal-of.pdf.jpg9fa295e0132a710ca0693b7da9c0e51eMD53open access20.500.12010/14081oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/140812021-03-17 19:36:01.343metadata only accessRepositorio Institucional - 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