Early dynamics of transmission and control of COVID-19: a mathematical modelling study

Background An outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has led to 95333 confirmed cases as of March 5, 2020. Understanding the early transmission dynamics of the infection and evaluating the effectiveness of control measures is crucial for assessing the potential for...

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Autores:
Tipo de recurso:
Article of investigation
Fecha de publicación:
2020
Institución:
Universidad de Bogotá Jorge Tadeo Lozano
Repositorio:
Expeditio: repositorio UTadeo
Idioma:
eng
OAI Identifier:
oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/13588
Acceso en línea:
https://doi.org/10.1016/
http://hdl.handle.net/20.500.12010/13588
Palabra clave:
COVID-19
Mathematical modelling study
Síndrome respiratorio agudo grave
COVID-19
SARS-CoV-2
Coronavirus
Rights
License
Abierto (Texto Completo)
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oai_identifier_str oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/13588
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dc.title.spa.fl_str_mv Early dynamics of transmission and control of COVID-19: a mathematical modelling study
title Early dynamics of transmission and control of COVID-19: a mathematical modelling study
spellingShingle Early dynamics of transmission and control of COVID-19: a mathematical modelling study
COVID-19
Mathematical modelling study
Síndrome respiratorio agudo grave
COVID-19
SARS-CoV-2
Coronavirus
title_short Early dynamics of transmission and control of COVID-19: a mathematical modelling study
title_full Early dynamics of transmission and control of COVID-19: a mathematical modelling study
title_fullStr Early dynamics of transmission and control of COVID-19: a mathematical modelling study
title_full_unstemmed Early dynamics of transmission and control of COVID-19: a mathematical modelling study
title_sort Early dynamics of transmission and control of COVID-19: a mathematical modelling study
dc.subject.spa.fl_str_mv COVID-19
Mathematical modelling study
topic COVID-19
Mathematical modelling study
Síndrome respiratorio agudo grave
COVID-19
SARS-CoV-2
Coronavirus
dc.subject.lemb.spa.fl_str_mv Síndrome respiratorio agudo grave
COVID-19
SARS-CoV-2
Coronavirus
description Background An outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has led to 95333 confirmed cases as of March 5, 2020. Understanding the early transmission dynamics of the infection and evaluating the effectiveness of control measures is crucial for assessing the potential for sustained transmission to occur in new areas. Combining a mathematical model of severe SARS-CoV-2 transmission with four datasets from within and outside Wuhan, we estimated how transmission in Wuhan varied between December, 2019, and February, 2020. We used these estimates to assess the potential for sustained human-to-human transmission to occur in locations outside Wuhan if cases were introduced. Methods We combined a stochastic transmission model with data on cases of coronavirus disease 2019 (COVID-19) in Wuhan and international cases that originated in Wuhan to estimate how transmission had varied over time during January, 2020, and February, 2020. Based on these estimates, we then calculated the probability that newly introduced cases might generate outbreaks in other areas. To estimate the early dynamics of transmission in Wuhan, we fitted a stochastic transmission dynamic model to multiple publicly available datasets on cases in Wuhan and internationally exported cases from Wuhan. The four datasets we fitted to were: daily number of new internationally exported cases (or lack thereof), by date of onset, as of Jan 26, 2020; daily number of new cases in Wuhan with no market exposure, by date of onset, between Dec 1, 2019, and Jan 1, 2020; daily number of new cases in China, by date of onset, between Dec 29, 2019, and Jan 23, 2020; and proportion of infected passengers on evacuation flights between Jan 29, 2020, and Feb 4, 2020. We used an additional two datasets for comparison with model outputs: daily number of new exported cases from Wuhan (or lack thereof) in countries with high connectivity to Wuhan (ie, top 20 most at-risk countries), by date of confirmation, as of Feb 10, 2020; and data on new confirmed cases reported in Wuhan between Jan 16, 2020, and Feb 11, 2020. Findings We estimated that the median daily reproduction number (Rt ) in Wuhan declined from 2·35 (95% CI 1·15–4·77) 1 week before travel restrictions were introduced on Jan 23, 2020, to 1·05 (0·41–2·39) 1 week after. Based on our estimates of Rt , assuming SARS-like variation, we calculated that in locations with similar transmission potential to Wuhan in early January, once there are at least four independently introduced cases, there is a more than 50% chance the infection will establish within that population. Interpretation Our results show that COVID-19 transmission probably declined in Wuhan during late January, 2020, coinciding with the introduction of travel control measures. As more cases arrive in international locations with similar transmission potential to Wuhan before these control measures, it is likely many chains of transmission will fail to establish initially, but might lead to new outbreaks eventually. Funding Wellcome Trust, Health Data Research UK, Bill & Melinda Gates Foundation, and National Institute for Health Research.
publishDate 2020
dc.date.accessioned.none.fl_str_mv 2020-09-22T17:28:19Z
dc.date.available.none.fl_str_mv 2020-09-22T17:28:19Z
dc.date.created.none.fl_str_mv 2020
dc.type.local.spa.fl_str_mv Artículo
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dc.identifier.issn.spa.fl_str_mv https://doi.org/10.1016/
dc.identifier.other.spa.fl_str_mv https://doi.org/10.1016/
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/20.500.12010/13588
dc.identifier.doi.spa.fl_str_mv https://doi.org/10.1016/
url https://doi.org/10.1016/
http://hdl.handle.net/20.500.12010/13588
dc.language.iso.spa.fl_str_mv eng
language eng
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rights_invalid_str_mv Abierto (Texto Completo)
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dc.format.extent.spa.fl_str_mv 6 páginas
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv The Lancet
dc.source.spa.fl_str_mv reponame:Expeditio Repositorio Institucional UJTL
instname:Universidad de Bogotá Jorge Tadeo Lozano
instname_str Universidad de Bogotá Jorge Tadeo Lozano
institution Universidad de Bogotá Jorge Tadeo Lozano
reponame_str Expeditio Repositorio Institucional UJTL
collection Expeditio Repositorio Institucional UJTL
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spelling 2020-09-22T17:28:19Z2020-09-22T17:28:19Z2020https://doi.org/10.1016/https://doi.org/10.1016/http://hdl.handle.net/20.500.12010/13588https://doi.org/10.1016/Background An outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has led to 95333 confirmed cases as of March 5, 2020. Understanding the early transmission dynamics of the infection and evaluating the effectiveness of control measures is crucial for assessing the potential for sustained transmission to occur in new areas. Combining a mathematical model of severe SARS-CoV-2 transmission with four datasets from within and outside Wuhan, we estimated how transmission in Wuhan varied between December, 2019, and February, 2020. We used these estimates to assess the potential for sustained human-to-human transmission to occur in locations outside Wuhan if cases were introduced. Methods We combined a stochastic transmission model with data on cases of coronavirus disease 2019 (COVID-19) in Wuhan and international cases that originated in Wuhan to estimate how transmission had varied over time during January, 2020, and February, 2020. Based on these estimates, we then calculated the probability that newly introduced cases might generate outbreaks in other areas. To estimate the early dynamics of transmission in Wuhan, we fitted a stochastic transmission dynamic model to multiple publicly available datasets on cases in Wuhan and internationally exported cases from Wuhan. The four datasets we fitted to were: daily number of new internationally exported cases (or lack thereof), by date of onset, as of Jan 26, 2020; daily number of new cases in Wuhan with no market exposure, by date of onset, between Dec 1, 2019, and Jan 1, 2020; daily number of new cases in China, by date of onset, between Dec 29, 2019, and Jan 23, 2020; and proportion of infected passengers on evacuation flights between Jan 29, 2020, and Feb 4, 2020. We used an additional two datasets for comparison with model outputs: daily number of new exported cases from Wuhan (or lack thereof) in countries with high connectivity to Wuhan (ie, top 20 most at-risk countries), by date of confirmation, as of Feb 10, 2020; and data on new confirmed cases reported in Wuhan between Jan 16, 2020, and Feb 11, 2020. Findings We estimated that the median daily reproduction number (Rt ) in Wuhan declined from 2·35 (95% CI 1·15–4·77) 1 week before travel restrictions were introduced on Jan 23, 2020, to 1·05 (0·41–2·39) 1 week after. Based on our estimates of Rt , assuming SARS-like variation, we calculated that in locations with similar transmission potential to Wuhan in early January, once there are at least four independently introduced cases, there is a more than 50% chance the infection will establish within that population. Interpretation Our results show that COVID-19 transmission probably declined in Wuhan during late January, 2020, coinciding with the introduction of travel control measures. As more cases arrive in international locations with similar transmission potential to Wuhan before these control measures, it is likely many chains of transmission will fail to establish initially, but might lead to new outbreaks eventually. Funding Wellcome Trust, Health Data Research UK, Bill & Melinda Gates Foundation, and National Institute for Health Research.6 páginasapplication/pdfengThe Lancetreponame:Expeditio Repositorio Institucional UJTLinstname:Universidad de Bogotá Jorge Tadeo LozanoCOVID-19Mathematical modelling studySíndrome respiratorio agudo graveCOVID-19SARS-CoV-2CoronavirusEarly dynamics of transmission and control of COVID-19: a mathematical modelling studyArtículohttp://purl.org/coar/resource_type/c_2df8fbb1Abierto (Texto Completo)http://purl.org/coar/access_right/c_abf2Kucharski, Adam JRussell, Timothy WDiamond, CharlieLiu, YangEdmunds, JohnFunk, SebastianEggo, Rosalind MORIGINAL1-s2.0-S1473309920301444-main.pdf1-s2.0-S1473309920301444-main.pdfVer artículoapplication/pdf376013https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/13588/1/1-s2.0-S1473309920301444-main.pdf17d73be169f53aa656b2e74e3db6abd5MD51open accessLICENSElicense.txtlicense.txttext/plain; charset=utf-82938https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/13588/2/license.txtabceeb1c943c50d3343516f9dbfc110fMD52open accessTHUMBNAIL1-s2.0-S1473309920301444-main.pdf.jpg1-s2.0-S1473309920301444-main.pdf.jpgIM Thumbnailimage/jpeg16252https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/13588/3/1-s2.0-S1473309920301444-main.pdf.jpg1b6454873133ce797005c2b0670b21bcMD53open access20.500.12010/13588oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/135882020-09-22 12:28:19.372open accessRepositorio Institucional - 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