Branching and Rooting Out with a CT Scanner: The Why, the How, and the Outcomes, Present and Possibly Future

Until recently, a majority of the applications of X-ray computed tomography (CT) scanning in plant sciences remained descriptive; some included a quantification of the plant materials when the root-soil isolation or branch-leaf separation was satisfactory; and a few involved the modeling of plant bi...

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Autores:
Tipo de recurso:
Book
Fecha de publicación:
2016
Institución:
Universidad de Bogotá Jorge Tadeo Lozano
Repositorio:
Expeditio: repositorio UTadeo
Idioma:
eng
OAI Identifier:
oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/14783
Acceso en línea:
https://www.frontiersin.org/research-topics/2132/branching-and-rooting-out-with-a-ct-scanner-the-why-the-how-and-the-outcomes-present-and-possibly-fu
http://hdl.handle.net/20.500.12010/14783
Palabra clave:
Botánica
Tomografía Computarizada (TC)
Imagen de plantas y fenotipado
Aplicaciones de estrés fitopatológico y ambiental
Rights
License
Abierto (Texto Completo)
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oai_identifier_str oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/14783
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dc.title.spa.fl_str_mv Branching and Rooting Out with a CT Scanner: The Why, the How, and the Outcomes, Present and Possibly Future
title Branching and Rooting Out with a CT Scanner: The Why, the How, and the Outcomes, Present and Possibly Future
spellingShingle Branching and Rooting Out with a CT Scanner: The Why, the How, and the Outcomes, Present and Possibly Future
Botánica
Tomografía Computarizada (TC)
Imagen de plantas y fenotipado
Aplicaciones de estrés fitopatológico y ambiental
title_short Branching and Rooting Out with a CT Scanner: The Why, the How, and the Outcomes, Present and Possibly Future
title_full Branching and Rooting Out with a CT Scanner: The Why, the How, and the Outcomes, Present and Possibly Future
title_fullStr Branching and Rooting Out with a CT Scanner: The Why, the How, and the Outcomes, Present and Possibly Future
title_full_unstemmed Branching and Rooting Out with a CT Scanner: The Why, the How, and the Outcomes, Present and Possibly Future
title_sort Branching and Rooting Out with a CT Scanner: The Why, the How, and the Outcomes, Present and Possibly Future
dc.subject.spa.fl_str_mv Botánica
topic Botánica
Tomografía Computarizada (TC)
Imagen de plantas y fenotipado
Aplicaciones de estrés fitopatológico y ambiental
dc.subject.lemb.spa.fl_str_mv Tomografía Computarizada (TC)
Imagen de plantas y fenotipado
Aplicaciones de estrés fitopatológico y ambiental
description Until recently, a majority of the applications of X-ray computed tomography (CT) scanning in plant sciences remained descriptive; some included a quantification of the plant materials when the root-soil isolation or branch-leaf separation was satisfactory; and a few involved the modeling of plant biology processes or the assessment of treatment or disease effects on plant biomass and structures during growth. In the last decade, repeated CT scanning of the same plants was reported in an increasing number of studies in which moderate doses of X-rays had been used. Besides the general objectives of Frontiers in Plant Science research topics, “Branching and Rooting Out with a CT Scanner” was proposed to meet specific objectives: (i) providing a non-technical update on knowledge about the application of CT scanning technology to plants, starting with the type of CT scanning data collected (CT images vs. CT numbers) and their processing in the graphical and numerical approaches; (ii) drawing the limits of the CT scanning approach, which because it is based on material density can distinguish materials with contrasting or moderately overlapping densities (e.g., branches vs. leaves, roots vs. non-organic soils) but not the others (e.g., roots vs. organic soils); (iii) explaining with a sufficient level of detail the main procedures used for graphical, quantitative and statistical analyses of plant CT scanning data, including fractal complexity measures and statistics appropriate for repeated plant CT scanning, in experiments where the research hypotheses are about biological processes such as light interception by canopies, root disease development and plant growth under stress conditions; (iv) comparing plant CT scanning with an alternative technology that applies to plants, such as the phenomics platforms which target leaf canopies; and (v) providing current and potential users of plant CT scanning with up-to-date information and exhaustive documentation, including clear perspectives and well-defined goals for the future, for them to be even more efficient or most efficient from start in their research work.
publishDate 2016
dc.date.created.none.fl_str_mv 2016
dc.date.accessioned.none.fl_str_mv 2020-10-22T20:05:51Z
dc.date.available.none.fl_str_mv 2020-10-22T20:05:51Z
dc.type.local.spa.fl_str_mv Libro
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format http://purl.org/coar/resource_type/c_2f33
dc.identifier.isbn.none.fl_str_mv 978-2-889-19791-0
dc.identifier.issn.none.fl_str_mv 1664-8714
dc.identifier.other.none.fl_str_mv https://www.frontiersin.org/research-topics/2132/branching-and-rooting-out-with-a-ct-scanner-the-why-the-how-and-the-outcomes-present-and-possibly-fu
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/20.500.12010/14783
dc.identifier.doi.none.fl_str_mv 10.3389/978-2-88919-791-0
identifier_str_mv 978-2-889-19791-0
1664-8714
10.3389/978-2-88919-791-0
url https://www.frontiersin.org/research-topics/2132/branching-and-rooting-out-with-a-ct-scanner-the-why-the-how-and-the-outcomes-present-and-possibly-fu
http://hdl.handle.net/20.500.12010/14783
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.references.spa.fl_str_mv Dutilleul, P., Lafond, J. A., eds. (2016). Branching and Rooting Out with a CT Scanner: The Why, the How, and the Outcomes, Present and Possibly Future. Lausanne: Frontiers Media. doi: 10.3389/978-2-88919-791-0
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.local.spa.fl_str_mv Abierto (Texto Completo)
dc.rights.creativecommons.none.fl_str_mv https://creativecommons.org/licenses/by/4.0/legalcode
rights_invalid_str_mv Abierto (Texto Completo)
https://creativecommons.org/licenses/by/4.0/legalcode
http://purl.org/coar/access_right/c_abf2
dc.format.extent.spa.fl_str_mv 93 páginas
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Frontiers Media SA
institution Universidad de Bogotá Jorge Tadeo Lozano
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spelling 2020-10-22T20:05:51Z2020-10-22T20:05:51Z2016978-2-889-19791-01664-8714https://www.frontiersin.org/research-topics/2132/branching-and-rooting-out-with-a-ct-scanner-the-why-the-how-and-the-outcomes-present-and-possibly-fuhttp://hdl.handle.net/20.500.12010/1478310.3389/978-2-88919-791-093 páginasapplication/pdfengFrontiers Media SABotánicaTomografía Computarizada (TC)Imagen de plantas y fenotipadoAplicaciones de estrés fitopatológico y ambientalBranching and Rooting Out with a CT Scanner: The Why, the How, and the Outcomes, Present and Possibly FutureLibrohttp://purl.org/coar/resource_type/c_2f33Abierto (Texto Completo)https://creativecommons.org/licenses/by/4.0/legalcodehttp://purl.org/coar/access_right/c_abf2Dutilleul, P., Lafond, J. A., eds. (2016). Branching and Rooting Out with a CT Scanner: The Why, the How, and the Outcomes, Present and Possibly Future. Lausanne: Frontiers Media. doi: 10.3389/978-2-88919-791-0Until recently, a majority of the applications of X-ray computed tomography (CT) scanning in plant sciences remained descriptive; some included a quantification of the plant materials when the root-soil isolation or branch-leaf separation was satisfactory; and a few involved the modeling of plant biology processes or the assessment of treatment or disease effects on plant biomass and structures during growth. In the last decade, repeated CT scanning of the same plants was reported in an increasing number of studies in which moderate doses of X-rays had been used. Besides the general objectives of Frontiers in Plant Science research topics, “Branching and Rooting Out with a CT Scanner” was proposed to meet specific objectives: (i) providing a non-technical update on knowledge about the application of CT scanning technology to plants, starting with the type of CT scanning data collected (CT images vs. CT numbers) and their processing in the graphical and numerical approaches; (ii) drawing the limits of the CT scanning approach, which because it is based on material density can distinguish materials with contrasting or moderately overlapping densities (e.g., branches vs. leaves, roots vs. non-organic soils) but not the others (e.g., roots vs. organic soils); (iii) explaining with a sufficient level of detail the main procedures used for graphical, quantitative and statistical analyses of plant CT scanning data, including fractal complexity measures and statistics appropriate for repeated plant CT scanning, in experiments where the research hypotheses are about biological processes such as light interception by canopies, root disease development and plant growth under stress conditions; (iv) comparing plant CT scanning with an alternative technology that applies to plants, such as the phenomics platforms which target leaf canopies; and (v) providing current and potential users of plant CT scanning with up-to-date information and exhaustive documentation, including clear perspectives and well-defined goals for the future, for them to be even more efficient or most efficient from start in their research work.Dutilleul, PierreLafond, Jonathan A.ORIGINALBranching and Rooting Out with a CT Scanner - The Why, the How, and the Outcomes, Present and Possibly Future_39.PDFBranching and Rooting Out with a CT Scanner - The Why, the How, and the Outcomes, Present and Possibly Future_39.PDFVer documentoapplication/pdf19094202https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14783/1/Branching%20and%20Rooting%20Out%20with%20a%20CT%20Scanner%20-%20The%20Why%2c%20the%20How%2c%20and%20the%20Outcomes%2c%20Present%20and%20Possibly%20Future_39.PDF28283f101b53fb82e867c8260eb5a743MD51open accessLICENSElicense.txtlicense.txttext/plain; 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