The COVID-19 drug and gene set library
In a short period, many research publications that report sets of experimentally validated drugs as potential COVID-19 therapies have emerged. To organize this accumulating knowledge, we developed the COVID-19 Drug and Gene Set Library (https://amp.pharm.mssm.edu/covid19/), a collection of drug and...
- Autores:
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2020
- Institución:
- Universidad de Bogotá Jorge Tadeo Lozano
- Repositorio:
- Expeditio: repositorio UTadeo
- Idioma:
- eng
- OAI Identifier:
- oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/14025
- Acceso en línea:
- https://doi.org/10.1016/j.patter.2020.100090
http://hdl.handle.net/20.500.12010/14025
- Palabra clave:
- COVID-19
Drug
Síndrome respiratorio agudo grave
COVID-19
SARS-CoV-2
Coronavirus
- Rights
- License
- Abierto (Texto Completo)
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oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/14025 |
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|
dc.title.spa.fl_str_mv |
The COVID-19 drug and gene set library |
title |
The COVID-19 drug and gene set library |
spellingShingle |
The COVID-19 drug and gene set library COVID-19 Drug Síndrome respiratorio agudo grave COVID-19 SARS-CoV-2 Coronavirus |
title_short |
The COVID-19 drug and gene set library |
title_full |
The COVID-19 drug and gene set library |
title_fullStr |
The COVID-19 drug and gene set library |
title_full_unstemmed |
The COVID-19 drug and gene set library |
title_sort |
The COVID-19 drug and gene set library |
dc.subject.spa.fl_str_mv |
COVID-19 Drug |
topic |
COVID-19 Drug Síndrome respiratorio agudo grave COVID-19 SARS-CoV-2 Coronavirus |
dc.subject.lemb.spa.fl_str_mv |
Síndrome respiratorio agudo grave COVID-19 SARS-CoV-2 Coronavirus |
description |
In a short period, many research publications that report sets of experimentally validated drugs as potential COVID-19 therapies have emerged. To organize this accumulating knowledge, we developed the COVID-19 Drug and Gene Set Library (https://amp.pharm.mssm.edu/covid19/), a collection of drug and gene sets related to COVID-19 research from multiple sources. The platform enables users to view, download, analyze, visualize, and contribute drug and gene sets related to COVID-19 research. To evaluate the content of the library, we compared the results from six in vitro drug screens for COVID-19 repurposing candidates. Surprisingly, we observe low overlap across screens while highlighting overlapping candidates that should receive more attention as potential therapeutics for COVID-19. Overall, the COVID-19 Drug and Gene Set Library can be used to identify community consensus, make researchers and clinicians aware of new potential therapies, enable machine-learning applications, and facilitate the research community to work together toward a cure. |
publishDate |
2020 |
dc.date.accessioned.none.fl_str_mv |
2020-09-30T16:56:52Z |
dc.date.available.none.fl_str_mv |
2020-09-30T16:56:52Z |
dc.date.created.none.fl_str_mv |
2020 |
dc.type.local.spa.fl_str_mv |
Artículo |
dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_2df8fbb1 |
format |
http://purl.org/coar/resource_type/c_2df8fbb1 |
dc.identifier.issn.spa.fl_str_mv |
2666-3899 |
dc.identifier.other.spa.fl_str_mv |
https://doi.org/10.1016/j.patter.2020.100090 |
dc.identifier.uri.none.fl_str_mv |
http://hdl.handle.net/20.500.12010/14025 |
dc.identifier.doi.spa.fl_str_mv |
https://doi.org/10.1016/j.patter.2020.100090 |
identifier_str_mv |
2666-3899 |
url |
https://doi.org/10.1016/j.patter.2020.100090 http://hdl.handle.net/20.500.12010/14025 |
dc.language.iso.spa.fl_str_mv |
eng |
language |
eng |
dc.rights.coar.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
dc.rights.local.spa.fl_str_mv |
Abierto (Texto Completo) |
rights_invalid_str_mv |
Abierto (Texto Completo) http://purl.org/coar/access_right/c_abf2 |
dc.format.extent.spa.fl_str_mv |
11 páginas |
dc.format.mimetype.spa.fl_str_mv |
application/pdf |
dc.publisher.spa.fl_str_mv |
Patterns |
dc.source.spa.fl_str_mv |
reponame:Expeditio Repositorio Institucional UJTL instname:Universidad de Bogotá Jorge Tadeo Lozano |
instname_str |
Universidad de Bogotá Jorge Tadeo Lozano |
institution |
Universidad de Bogotá Jorge Tadeo Lozano |
reponame_str |
Expeditio Repositorio Institucional UJTL |
collection |
Expeditio Repositorio Institucional UJTL |
bitstream.url.fl_str_mv |
https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14025/2/license.txt https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14025/3/The-COVID-19-Drug-and-Gene-Set-Library_2020_Patterns.pdf.jpg |
bitstream.checksum.fl_str_mv |
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bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 |
repository.name.fl_str_mv |
Repositorio Institucional - Universidad Jorge Tadeo Lozano |
repository.mail.fl_str_mv |
expeditio@utadeo.edu.co |
_version_ |
1814213855767691264 |
spelling |
2020-09-30T16:56:52Z2020-09-30T16:56:52Z20202666-3899https://doi.org/10.1016/j.patter.2020.100090http://hdl.handle.net/20.500.12010/14025https://doi.org/10.1016/j.patter.2020.100090In a short period, many research publications that report sets of experimentally validated drugs as potential COVID-19 therapies have emerged. To organize this accumulating knowledge, we developed the COVID-19 Drug and Gene Set Library (https://amp.pharm.mssm.edu/covid19/), a collection of drug and gene sets related to COVID-19 research from multiple sources. The platform enables users to view, download, analyze, visualize, and contribute drug and gene sets related to COVID-19 research. To evaluate the content of the library, we compared the results from six in vitro drug screens for COVID-19 repurposing candidates. Surprisingly, we observe low overlap across screens while highlighting overlapping candidates that should receive more attention as potential therapeutics for COVID-19. Overall, the COVID-19 Drug and Gene Set Library can be used to identify community consensus, make researchers and clinicians aware of new potential therapies, enable machine-learning applications, and facilitate the research community to work together toward a cure.11 páginasapplication/pdfengPatternsreponame:Expeditio Repositorio Institucional UJTLinstname:Universidad de Bogotá Jorge Tadeo LozanoCOVID-19DrugSíndrome respiratorio agudo graveCOVID-19SARS-CoV-2CoronavirusThe COVID-19 drug and gene set libraryArtículohttp://purl.org/coar/resource_type/c_2df8fbb1Abierto (Texto Completo)http://purl.org/coar/access_right/c_abf2Stein, Daniel J.Kuleshov, Maxim V.Clarke, Daniel J.B.Kropiwnicki, ErykJagodnik, Kathleen M.Bartal, AlonEvangelista, John E.Hom, JasonCheng, MinxuanBailey, AllisonZhou, AbigailFerguson, Laura B.Lachmann, AlexanderMa’ayan, AviLICENSElicense.txtlicense.txttext/plain; charset=utf-82938https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14025/2/license.txtabceeb1c943c50d3343516f9dbfc110fMD52open accessTHUMBNAILThe-COVID-19-Drug-and-Gene-Set-Library_2020_Patterns.pdf.jpgThe-COVID-19-Drug-and-Gene-Set-Library_2020_Patterns.pdf.jpgIM Thumbnailimage/jpeg17189https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14025/3/The-COVID-19-Drug-and-Gene-Set-Library_2020_Patterns.pdf.jpg2ee49fabdbf3f5a464b6dfe67cdb7636MD53open access20.500.12010/14025oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/140252021-03-17 19:58:18.754metadata only accessRepositorio Institucional - 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