De novo transcriptome assembly of loggerhead sea turtle nesting of the Colombian Caribbean
Loggerhead sea turtle Caretta caretta is widely distributed in the oceans of tropical and subtropical latitude. This turtle is an endangered species due to anthropic and natural factors that have decreased their population levels. In this study, RNA sequencing and de-novo assembly of genes expressed...
- Autores:
- Tipo de recurso:
- Fecha de publicación:
- 2017
- Institución:
- Universidad de Bogotá Jorge Tadeo Lozano
- Repositorio:
- Expeditio: repositorio UTadeo
- Idioma:
- OAI Identifier:
- oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/9236
- Acceso en línea:
- http://dx.doi.org/10.1016/j.gdata.2017.06.005
http://hdl.handle.net/20.500.12010/9236
- Palabra clave:
- Caretta caretta turtle
Trinity
RNAseq
Illumina
N50
Tortugas -- Investigaciones
ARN -- Investigaciones
- Rights
- License
- Abierto (Texto Completo)
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| dc.title.spa.fl_str_mv |
De novo transcriptome assembly of loggerhead sea turtle nesting of the Colombian Caribbean |
| title |
De novo transcriptome assembly of loggerhead sea turtle nesting of the Colombian Caribbean |
| spellingShingle |
De novo transcriptome assembly of loggerhead sea turtle nesting of the Colombian Caribbean Caretta caretta turtle Trinity RNAseq Illumina N50 Tortugas -- Investigaciones ARN -- Investigaciones |
| title_short |
De novo transcriptome assembly of loggerhead sea turtle nesting of the Colombian Caribbean |
| title_full |
De novo transcriptome assembly of loggerhead sea turtle nesting of the Colombian Caribbean |
| title_fullStr |
De novo transcriptome assembly of loggerhead sea turtle nesting of the Colombian Caribbean |
| title_full_unstemmed |
De novo transcriptome assembly of loggerhead sea turtle nesting of the Colombian Caribbean |
| title_sort |
De novo transcriptome assembly of loggerhead sea turtle nesting of the Colombian Caribbean |
| dc.subject.spa.fl_str_mv |
Caretta caretta turtle Trinity RNAseq Illumina N50 |
| topic |
Caretta caretta turtle Trinity RNAseq Illumina N50 Tortugas -- Investigaciones ARN -- Investigaciones |
| dc.subject.lemb.spa.fl_str_mv |
Tortugas -- Investigaciones ARN -- Investigaciones |
| description |
Loggerhead sea turtle Caretta caretta is widely distributed in the oceans of tropical and subtropical latitude. This turtle is an endangered species due to anthropic and natural factors that have decreased their population levels. In this study, RNA sequencing and de-novo assembly of genes expressed in blood were performed. The raw FASTQ files have been deposited on NCBI's SRA database with accession number SRX2629512. A total of 5.4 Gb raw sequence data were obtained, corresponding to 48,257,019 raw reads. Trinity pipeline was used to perform a de-novo assembly, we were able to identify 64,930 transcripts for female loggerhead turtle transcriptome with an N50 of 1131 bp. The obtained transcriptome data will be useful for further studies of the physiology, biochemistry and evolution in this species. |
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2017 |
| dc.date.created.none.fl_str_mv |
2017 |
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2020-05-08T16:54:18Z |
| dc.date.available.none.fl_str_mv |
2020-05-08T16:54:18Z |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
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Artículo |
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info:eu-repo/semantics/article |
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2213-5960 |
| dc.identifier.other.spa.fl_str_mv |
http://dx.doi.org/10.1016/j.gdata.2017.06.005 |
| dc.identifier.uri.none.fl_str_mv |
http://hdl.handle.net/20.500.12010/9236 |
| dc.identifier.doi.spa.fl_str_mv |
http://dx.doi.org/10.1016/j.gdata.2017.06.005 |
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instname:Universidad de Bogotá Jorge Tadeo Lozano |
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reponame:Repositorio Institucional de la Universidad de Bogotá Jorge Tadeo Lozano |
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2213-5960 instname:Universidad de Bogotá Jorge Tadeo Lozano reponame:Repositorio Institucional de la Universidad de Bogotá Jorge Tadeo Lozano |
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http://dx.doi.org/10.1016/j.gdata.2017.06.005 http://hdl.handle.net/20.500.12010/9236 |
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http://purl.org/coar/access_right/c_abf2 |
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Abierto (Texto Completo) |
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Abierto (Texto Completo) http://purl.org/coar/access_right/c_abf2 |
| dc.format.extent.spa.fl_str_mv |
3 páginas |
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application/pdf |
| dc.coverage.spatial.spa.fl_str_mv |
Bogotá, Colombia |
| dc.publisher.spa.fl_str_mv |
Universidad de Bogotá Jorge Tadeo Lozano |
| institution |
Universidad de Bogotá Jorge Tadeo Lozano |
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Bogotá, Colombia2020-05-08T16:54:18Z2020-05-08T16:54:18Z20172213-5960http://dx.doi.org/10.1016/j.gdata.2017.06.005http://hdl.handle.net/20.500.12010/9236http://dx.doi.org/10.1016/j.gdata.2017.06.005instname:Universidad de Bogotá Jorge Tadeo Lozanoreponame:Repositorio Institucional de la Universidad de Bogotá Jorge Tadeo LozanoLoggerhead sea turtle Caretta caretta is widely distributed in the oceans of tropical and subtropical latitude. This turtle is an endangered species due to anthropic and natural factors that have decreased their population levels. In this study, RNA sequencing and de-novo assembly of genes expressed in blood were performed. The raw FASTQ files have been deposited on NCBI's SRA database with accession number SRX2629512. A total of 5.4 Gb raw sequence data were obtained, corresponding to 48,257,019 raw reads. Trinity pipeline was used to perform a de-novo assembly, we were able to identify 64,930 transcripts for female loggerhead turtle transcriptome with an N50 of 1131 bp. The obtained transcriptome data will be useful for further studies of the physiology, biochemistry and evolution in this species.3 páginasapplication/pdfUniversidad de Bogotá Jorge Tadeo LozanoCaretta caretta turtleTrinityRNAseqIlluminaN50Tortugas -- InvestigacionesARN -- InvestigacionesDe novo transcriptome assembly of loggerhead sea turtle nesting of the Colombian CaribbeanArtículoinfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_2df8fbb1Abierto (Texto Completo)http://purl.org/coar/access_right/c_abf2Pinzón, AndrésMariño-Ramírez, LeonardoHernández-Fernández, JavierORIGINAL10654.pdf10654.pdfVer artículoapplication/pdf136483https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/9236/1/10654.pdfb49a80c192b4b652a8874d7757c02125MD51open accessLICENSElicense.txtlicense.txttext/plain; charset=utf-82938https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/9236/2/license.txtabceeb1c943c50d3343516f9dbfc110fMD52open accessTHUMBNAIL10654.pdf.jpg10654.pdf.jpgIM Thumbnailimage/jpeg20489https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/9236/3/10654.pdf.jpga9f398a1c15427cf17219c8ce6aa13a2MD53open access20.500.12010/9236oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/92362020-05-08 11:55:19.402open accessRepositorio Institucional - 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