The Pangenome

This open access book offers the first comprehensive account of the pan-genome concept and its manifold implications. The realization that the genetic repertoire of a biological species always encompasses more than the genome of each individual is one of the earliest examples of big data in biology...

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Autores:
Tipo de recurso:
Book
Fecha de publicación:
2020
Institución:
Universidad de Bogotá Jorge Tadeo Lozano
Repositorio:
Expeditio: repositorio UTadeo
Idioma:
eng
OAI Identifier:
oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/14163
Acceso en línea:
https://www.springer.com/la/book/9783030382803#otherversion=9783030382810
http://hdl.handle.net/20.500.12010/14163
https://doi.org/10.1007/978-3-030-38281-0
Palabra clave:
Biology
Mathematics
Ecology
Medicine
Metagenomics
Microbial population analysis
Pangenome profile
Supra genome analysis
Computational tools
Selection
Recombination
Composition
Microevolution
Open access
Pan metagenomics
Pan microbiomics
Pan epigenome
Evolution
Microbial genetics and genomics
Evolutionary biology
Genetics and population dynamics
Microbial ecology
Human genetics
Genetics and genomics
Comparative genomics
Adaptive evolution
Bioinformatic genomics
Core dispensable genome
Acquired resistance
Bacterial species concept
Genomic diversity
Bacterial ecology
Pan phenomes
Microbiology (non-medical)
Genetics (non-medical)
Ecological science
The biosphere
Medical genetics
Applied mathematics
Gene transfer
Rights
License
Abierto (Texto Completo)
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dc.title.spa.fl_str_mv The Pangenome
dc.title.alternative.spa.fl_str_mv Diversity, Dynamics and Evolution of Genomes
title The Pangenome
spellingShingle The Pangenome
Biology
Mathematics
Ecology
Medicine
Metagenomics
Microbial population analysis
Pangenome profile
Supra genome analysis
Computational tools
Selection
Recombination
Composition
Microevolution
Open access
Pan metagenomics
Pan microbiomics
Pan epigenome
Evolution
Microbial genetics and genomics
Evolutionary biology
Genetics and population dynamics
Microbial ecology
Human genetics
Genetics and genomics
Comparative genomics
Adaptive evolution
Bioinformatic genomics
Core dispensable genome
Acquired resistance
Bacterial species concept
Genomic diversity
Bacterial ecology
Pan phenomes
Microbiology (non-medical)
Genetics (non-medical)
Ecological science
The biosphere
Medical genetics
Applied mathematics
Gene transfer
title_short The Pangenome
title_full The Pangenome
title_fullStr The Pangenome
title_full_unstemmed The Pangenome
title_sort The Pangenome
dc.subject.spa.fl_str_mv Biology
Mathematics
Ecology
Medicine
Metagenomics
Microbial population analysis
Pangenome profile
Supra genome analysis
Computational tools
Selection
Recombination
Composition
Microevolution
Open access
Pan metagenomics
Pan microbiomics
Pan epigenome
Evolution
topic Biology
Mathematics
Ecology
Medicine
Metagenomics
Microbial population analysis
Pangenome profile
Supra genome analysis
Computational tools
Selection
Recombination
Composition
Microevolution
Open access
Pan metagenomics
Pan microbiomics
Pan epigenome
Evolution
Microbial genetics and genomics
Evolutionary biology
Genetics and population dynamics
Microbial ecology
Human genetics
Genetics and genomics
Comparative genomics
Adaptive evolution
Bioinformatic genomics
Core dispensable genome
Acquired resistance
Bacterial species concept
Genomic diversity
Bacterial ecology
Pan phenomes
Microbiology (non-medical)
Genetics (non-medical)
Ecological science
The biosphere
Medical genetics
Applied mathematics
Gene transfer
dc.subject.lemb.spa.fl_str_mv Microbial genetics and genomics
Evolutionary biology
Genetics and population dynamics
Microbial ecology
Human genetics
Genetics and genomics
Comparative genomics
Adaptive evolution
Bioinformatic genomics
Core dispensable genome
Acquired resistance
Bacterial species concept
Genomic diversity
Bacterial ecology
Pan phenomes
dc.subject.keyword.spa.fl_str_mv Microbiology (non-medical)
Genetics (non-medical)
Ecological science
The biosphere
Medical genetics
Applied mathematics
Gene transfer
description This open access book offers the first comprehensive account of the pan-genome concept and its manifold implications. The realization that the genetic repertoire of a biological species always encompasses more than the genome of each individual is one of the earliest examples of big data in biology that opened biology to the unbounded. The study of genetic variation observed within a species challenges existing views and has profound consequences for our understanding of the fundamental mechanisms underpinning bacterial biology and evolution. The underlying rationale extends well beyond the initial prokaryotic focus to all kingdoms of life and evolves into similar concepts for metagenomes, phenomes and epigenomes. The book’s respective chapters address a range of topics, from the serendipitous emergence of the pan-genome concept and its impacts on the fields of microbiology, vaccinology and antimicrobial resistance, to the study of microbial communities, bioinformatic applications and mathematical models that tie in with complex systems and economic theory. Given its scope, the book will appeal to a broad readership interested in population dynamics, evolutionary biology and genomics.
publishDate 2020
dc.date.accessioned.none.fl_str_mv 2020-10-03T02:15:55Z
dc.date.available.none.fl_str_mv 2020-10-03T02:15:55Z
dc.date.created.none.fl_str_mv 2020-05-14
dc.type.local.spa.fl_str_mv Libro
dc.type.coar.spa.fl_str_mv http://purl.org/coar/resource_type/c_2f33
format http://purl.org/coar/resource_type/c_2f33
dc.identifier.isbn.none.fl_str_mv 978-3-030-38281-0
978-3-030-38280-3
dc.identifier.other.none.fl_str_mv https://www.springer.com/la/book/9783030382803#otherversion=9783030382810
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/20.500.12010/14163
dc.identifier.doi.none.fl_str_mv https://doi.org/10.1007/978-3-030-38281-0
identifier_str_mv 978-3-030-38281-0
978-3-030-38280-3
url https://www.springer.com/la/book/9783030382803#otherversion=9783030382810
http://hdl.handle.net/20.500.12010/14163
https://doi.org/10.1007/978-3-030-38281-0
dc.language.iso.spa.fl_str_mv eng
language eng
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.local.spa.fl_str_mv Abierto (Texto Completo)
dc.rights.creativecommons.none.fl_str_mv http://creativecommons.org/licenses/by/4.0/
rights_invalid_str_mv Abierto (Texto Completo)
http://creativecommons.org/licenses/by/4.0/
http://purl.org/coar/access_right/c_abf2
dc.format.extent.spa.fl_str_mv 311 páginas
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Springer Nature
institution Universidad de Bogotá Jorge Tadeo Lozano
bitstream.url.fl_str_mv https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14163/1/Book_ThePangenome.pdf
https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14163/2/license.txt
https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14163/3/Book_ThePangenome.pdf.jpg
bitstream.checksum.fl_str_mv 3c4874b741029a629c02f60875b2aef0
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bitstream.checksumAlgorithm.fl_str_mv MD5
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repository.name.fl_str_mv Repositorio Institucional - Universidad Jorge Tadeo Lozano
repository.mail.fl_str_mv expeditio@utadeo.edu.co
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spelling 2020-10-03T02:15:55Z2020-10-03T02:15:55Z2020-05-14978-3-030-38281-0978-3-030-38280-3https://www.springer.com/la/book/9783030382803#otherversion=9783030382810http://hdl.handle.net/20.500.12010/14163https://doi.org/10.1007/978-3-030-38281-0311 páginasapplication/pdfengSpringer NatureBiologyMathematicsEcologyMedicineMetagenomicsMicrobial population analysisPangenome profileSupra genome analysisComputational toolsSelectionRecombinationCompositionMicroevolutionOpen accessPan metagenomicsPan microbiomicsPan epigenomeEvolutionMicrobial genetics and genomicsEvolutionary biologyGenetics and population dynamicsMicrobial ecologyHuman geneticsGenetics and genomicsComparative genomicsAdaptive evolutionBioinformatic genomicsCore dispensable genomeAcquired resistanceBacterial species conceptGenomic diversityBacterial ecologyPan phenomesMicrobiology (non-medical)Genetics (non-medical)Ecological scienceThe biosphereMedical geneticsApplied mathematicsGene transferThe PangenomeDiversity, Dynamics and Evolution of GenomesLibrohttp://purl.org/coar/resource_type/c_2f33Abierto (Texto Completo)http://creativecommons.org/licenses/by/4.0/http://purl.org/coar/access_right/c_abf2This open access book offers the first comprehensive account of the pan-genome concept and its manifold implications. The realization that the genetic repertoire of a biological species always encompasses more than the genome of each individual is one of the earliest examples of big data in biology that opened biology to the unbounded. The study of genetic variation observed within a species challenges existing views and has profound consequences for our understanding of the fundamental mechanisms underpinning bacterial biology and evolution. The underlying rationale extends well beyond the initial prokaryotic focus to all kingdoms of life and evolves into similar concepts for metagenomes, phenomes and epigenomes. The book’s respective chapters address a range of topics, from the serendipitous emergence of the pan-genome concept and its impacts on the fields of microbiology, vaccinology and antimicrobial resistance, to the study of microbial communities, bioinformatic applications and mathematical models that tie in with complex systems and economic theory. Given its scope, the book will appeal to a broad readership interested in population dynamics, evolutionary biology and genomics.Tettelin, HervéMedini, DuccioORIGINALBook_ThePangenome.pdfBook_ThePangenome.pdfVer documentoapplication/pdf9205239https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14163/1/Book_ThePangenome.pdf3c4874b741029a629c02f60875b2aef0MD51open accessLICENSElicense.txtlicense.txttext/plain; charset=utf-82938https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14163/2/license.txtabceeb1c943c50d3343516f9dbfc110fMD52open accessTHUMBNAILBook_ThePangenome.pdf.jpgBook_ThePangenome.pdf.jpgIM Thumbnailimage/jpeg13315https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/14163/3/Book_ThePangenome.pdf.jpg403b1f5e5185ef01b3575a1b4ffa5015MD53open access20.500.12010/14163oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/141632021-02-23 15:53:17.828open accessRepositorio Institucional - Universidad Jorge Tadeo Lozanoexpeditio@utadeo.edu.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