Computer assisted assignment of ICD codes for primary admission diagnostic in ICUs

The intensive care units (ICUs) provide a constant monitoring and specialized support to patients with acute critical conditions, assuring timely interventions to rapid changes. A major determinant of the patient care in ICUs is the primary admission diagnosis. A typical diagnosis includes a nosolog...

Full description

Autores:
Tipo de recurso:
Fecha de publicación:
2017
Institución:
Universidad de Bogotá Jorge Tadeo Lozano
Repositorio:
Expeditio: repositorio UTadeo
Idioma:
OAI Identifier:
oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/9064
Acceso en línea:
https://link.springer.com/chapter/10.1007%2F978-3-319-66562-7_16
http://hdl.handle.net/20.500.12010/9064
Palabra clave:
Intensive care units
Diagnosis of admission
International classification of diseases and related health problems (ICD)
Diagnosis codification
Cuidados intensivos
Unidades de cuidados intensivos
Rights
License
Abierto (Texto Completo)
id UTADEO2_00bb1b769e0119a18a4e49b01152a2ba
oai_identifier_str oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/9064
network_acronym_str UTADEO2
network_name_str Expeditio: repositorio UTadeo
repository_id_str
dc.title.spa.fl_str_mv Computer assisted assignment of ICD codes for primary admission diagnostic in ICUs
title Computer assisted assignment of ICD codes for primary admission diagnostic in ICUs
spellingShingle Computer assisted assignment of ICD codes for primary admission diagnostic in ICUs
Intensive care units
Diagnosis of admission
International classification of diseases and related health problems (ICD)
Diagnosis codification
Cuidados intensivos
Unidades de cuidados intensivos
title_short Computer assisted assignment of ICD codes for primary admission diagnostic in ICUs
title_full Computer assisted assignment of ICD codes for primary admission diagnostic in ICUs
title_fullStr Computer assisted assignment of ICD codes for primary admission diagnostic in ICUs
title_full_unstemmed Computer assisted assignment of ICD codes for primary admission diagnostic in ICUs
title_sort Computer assisted assignment of ICD codes for primary admission diagnostic in ICUs
dc.subject.spa.fl_str_mv Intensive care units
Diagnosis of admission
International classification of diseases and related health problems (ICD)
Diagnosis codification
topic Intensive care units
Diagnosis of admission
International classification of diseases and related health problems (ICD)
Diagnosis codification
Cuidados intensivos
Unidades de cuidados intensivos
dc.subject.lemb.spa.fl_str_mv Cuidados intensivos
Unidades de cuidados intensivos
description The intensive care units (ICUs) provide a constant monitoring and specialized support to patients with acute critical conditions, assuring timely interventions to rapid changes. A major determinant of the patient care in ICUs is the primary admission diagnosis. A typical diagnosis includes a nosological entity or syndrome name, with the possibility to describe the clinical condition and the patient health state. This diagnosis is the starting point to establish intervention plans and to devise epidemiological studies. In the ICU physicians are in charge to define this diagnosis. Diagnoses in ICUs are commonly described in natural language. However, a common practice is to assign a normalized code from the international classification of diseases and related health problems (ICD). Unfortunately, this codification task is time expensive and requires highly specialized medical knowledge. In this work, we introduce a text mining system to automatically recover ICD codes for diagnosis of admission in ICUs. The system is based on a novel hierarchical recovery approach which is well suited to representation used in the ICD code. The proposed approach was evaluated by using a set of 1206 codified descriptions written in Spanish language corresponding to diagnoses in an real ICU. The results suggest that this approach may account for a considerable percentage of the diagnoses codified by the expert in the ICU. In particular, the F1 measure was 0.21±0.06 with a mean precision average of 0.3.
publishDate 2017
dc.date.created.none.fl_str_mv 2017
dc.date.accessioned.none.fl_str_mv 2020-04-29T16:31:45Z
dc.date.available.none.fl_str_mv 2020-04-29T16:31:45Z
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_2df8fbb1
dc.type.local.spa.fl_str_mv Artículo
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/article
dc.identifier.other.spa.fl_str_mv https://link.springer.com/chapter/10.1007%2F978-3-319-66562-7_16
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/20.500.12010/9064
dc.identifier.doi.spa.fl_str_mv 10.1007/978-3-319-66562-7 16
dc.identifier.instname.spa.fl_str_mv instname:Universidad de Bogotá Jorge Tadeo Lozano
dc.identifier.reponame.spa.fl_str_mv reponame:Repositorio Institucional de la Universidad de Bogotá Jorge Tadeo Lozano
url https://link.springer.com/chapter/10.1007%2F978-3-319-66562-7_16
http://hdl.handle.net/20.500.12010/9064
identifier_str_mv 10.1007/978-3-319-66562-7 16
instname:Universidad de Bogotá Jorge Tadeo Lozano
reponame:Repositorio Institucional de la Universidad de Bogotá Jorge Tadeo Lozano
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.local.spa.fl_str_mv Abierto (Texto Completo)
rights_invalid_str_mv Abierto (Texto Completo)
http://purl.org/coar/access_right/c_abf2
dc.format.extent.spa.fl_str_mv 13 páginas
dc.format.mimetype.spa.fl_str_mv image/jepg
dc.coverage.spatial.spa.fl_str_mv Bogotá, Colombia
dc.publisher.spa.fl_str_mv Universidad de Bogotá Jorge Tadeo Lozano
institution Universidad de Bogotá Jorge Tadeo Lozano
bitstream.url.fl_str_mv https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/9064/2/license.txt
https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/9064/4/Captura.PNG
https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/9064/5/9673.pdf.jpg
https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/9064/1/Captura.PNG
https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/9064/3/9673.pdf
bitstream.checksum.fl_str_mv abceeb1c943c50d3343516f9dbfc110f
8be2f7d8ace913ce020eaaab5faee9c9
3dd8891d2b108582c34ed272873a13b7
8be2f7d8ace913ce020eaaab5faee9c9
360d50be6c4ee0c52a91c21a587fc795
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositorio Institucional - Universidad Jorge Tadeo Lozano
repository.mail.fl_str_mv expeditio@utadeo.edu.co
_version_ 1814213892581097472
spelling Bogotá, Colombia2020-04-29T16:31:45Z2020-04-29T16:31:45Z2017https://link.springer.com/chapter/10.1007%2F978-3-319-66562-7_16http://hdl.handle.net/20.500.12010/906410.1007/978-3-319-66562-7 16instname:Universidad de Bogotá Jorge Tadeo Lozanoreponame:Repositorio Institucional de la Universidad de Bogotá Jorge Tadeo LozanoThe intensive care units (ICUs) provide a constant monitoring and specialized support to patients with acute critical conditions, assuring timely interventions to rapid changes. A major determinant of the patient care in ICUs is the primary admission diagnosis. A typical diagnosis includes a nosological entity or syndrome name, with the possibility to describe the clinical condition and the patient health state. This diagnosis is the starting point to establish intervention plans and to devise epidemiological studies. In the ICU physicians are in charge to define this diagnosis. Diagnoses in ICUs are commonly described in natural language. However, a common practice is to assign a normalized code from the international classification of diseases and related health problems (ICD). Unfortunately, this codification task is time expensive and requires highly specialized medical knowledge. In this work, we introduce a text mining system to automatically recover ICD codes for diagnosis of admission in ICUs. The system is based on a novel hierarchical recovery approach which is well suited to representation used in the ICD code. The proposed approach was evaluated by using a set of 1206 codified descriptions written in Spanish language corresponding to diagnoses in an real ICU. The results suggest that this approach may account for a considerable percentage of the diagnoses codified by the expert in the ICU. In particular, the F1 measure was 0.21±0.06 with a mean precision average of 0.3.13 páginasimage/jepgUniversidad de Bogotá Jorge Tadeo LozanoIntensive care unitsDiagnosis of admissionInternational classification of diseases and related health problems (ICD)Diagnosis codificationCuidados intensivosUnidades de cuidados intensivosComputer assisted assignment of ICD codes for primary admission diagnostic in ICUsArtículoinfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_2df8fbb1Abierto (Texto Completo)http://purl.org/coar/access_right/c_abf2Quiazúa, GiovannyRojas, CarlosOrdoñez, JavierMartínez, DarwinEnciso-Olivera, CésarGómez, FranciscoLICENSElicense.txtlicense.txttext/plain; charset=utf-82938https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/9064/2/license.txtabceeb1c943c50d3343516f9dbfc110fMD52open accessTHUMBNAILCaptura.PNGCaptura.PNGVer portadaimage/png122970https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/9064/4/Captura.PNG8be2f7d8ace913ce020eaaab5faee9c9MD54open access9673.pdf.jpg9673.pdf.jpgIM Thumbnailimage/jpeg16084https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/9064/5/9673.pdf.jpg3dd8891d2b108582c34ed272873a13b7MD55open accessORIGINALCaptura.PNGCaptura.PNGVer portadaimage/png122970https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/9064/1/Captura.PNG8be2f7d8ace913ce020eaaab5faee9c9MD51open access9673.pdf9673.pdfArtículo reservadoapplication/pdf998791https://expeditiorepositorio.utadeo.edu.co/bitstream/20.500.12010/9064/3/9673.pdf360d50be6c4ee0c52a91c21a587fc795MD53embargoed access|||2200-04-2920.500.12010/9064oai:expeditiorepositorio.utadeo.edu.co:20.500.12010/90642020-04-29 11:34:48.098open accessRepositorio Institucional - Universidad Jorge Tadeo Lozanoexpeditio@utadeo.edu.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