Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1

Here, we report the genome sequence of a Siphoviridae phage named vB_SauS_BaqSau1 (BaqSau1), infecting Staphylococcus aureus. Phage BaqSau1 was isolated from a sewage water treatment plant in Sahagún, Córdoba, Colombia. It has a double-stranded DNA (dsDNA) genome of 44,384 bp with 67 predicted genes...

Full description

Autores:
Lozano-Solano, Dayan
Reales-González, Jhonnatan
Catoe, Heath W.
Raya, Raul R.
Acosta-Hoyosa, Antonio J.
Tipo de recurso:
Fecha de publicación:
2020
Institución:
Universidad Simón Bolívar
Repositorio:
Repositorio Digital USB
Idioma:
eng
OAI Identifier:
oai:bonga.unisimon.edu.co:20.500.12442/5096
Acceso en línea:
https://hdl.handle.net/20.500.12442/5096
https:// doi.org/10.1128/MRA.00147-20
Palabra clave:
Genoma de ADN
Problemas de salud
Infecciones bacterianas
Resistencia a antibióticos
Rights
License
Attribution-NonCommercial-NoDerivatives 4.0 Internacional
id USIMONBOL2_88db77f36dcbc65cc689d28b007bc667
oai_identifier_str oai:bonga.unisimon.edu.co:20.500.12442/5096
network_acronym_str USIMONBOL2
network_name_str Repositorio Digital USB
repository_id_str
dc.title.eng.fl_str_mv Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1
title Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1
spellingShingle Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1
Genoma de ADN
Problemas de salud
Infecciones bacterianas
Resistencia a antibióticos
title_short Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1
title_full Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1
title_fullStr Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1
title_full_unstemmed Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1
title_sort Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1
dc.creator.fl_str_mv Lozano-Solano, Dayan
Reales-González, Jhonnatan
Catoe, Heath W.
Raya, Raul R.
Acosta-Hoyosa, Antonio J.
dc.contributor.author.none.fl_str_mv Lozano-Solano, Dayan
Reales-González, Jhonnatan
Catoe, Heath W.
Raya, Raul R.
Acosta-Hoyosa, Antonio J.
dc.subject.spa.fl_str_mv Genoma de ADN
Problemas de salud
Infecciones bacterianas
Resistencia a antibióticos
topic Genoma de ADN
Problemas de salud
Infecciones bacterianas
Resistencia a antibióticos
description Here, we report the genome sequence of a Siphoviridae phage named vB_SauS_BaqSau1 (BaqSau1), infecting Staphylococcus aureus. Phage BaqSau1 was isolated from a sewage water treatment plant in Sahagún, Córdoba, Colombia. It has a double-stranded DNA (dsDNA) genome of 44,384 bp with 67 predicted genes, including a lysin containing a CHAP (cysteine, histidine-dependent amidohydrolase/ peptidase) domain.
publishDate 2020
dc.date.accessioned.none.fl_str_mv 2020-04-13T17:21:45Z
dc.date.available.none.fl_str_mv 2020-04-13T17:21:45Z
dc.date.issued.none.fl_str_mv 2020
dc.type.spa.fl_str_mv article
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_6501
dc.type.driver.spa.fl_str_mv article
dc.identifier.issn.spa.fl_str_mv 2576098X
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12442/5096
dc.identifier.doi.none.fl_str_mv https:// doi.org/10.1128/MRA.00147-20
identifier_str_mv 2576098X
url https://hdl.handle.net/20.500.12442/5096
https:// doi.org/10.1128/MRA.00147-20
dc.language.iso.spa.fl_str_mv eng
language eng
dc.rights.*.fl_str_mv Attribution-NonCommercial-NoDerivatives 4.0 Internacional
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by-nc-nd/4.0/
rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 Internacional
http://creativecommons.org/licenses/by-nc-nd/4.0/
http://purl.org/coar/access_right/c_abf2
dc.format.mimetype.spa.fl_str_mv pdf
dc.publisher.spa.fl_str_mv American Society for Microbiology
dc.source.eng.fl_str_mv Microbiology Resource Announcements
dc.source.spa.fl_str_mv Vol. 9,No. 15 (2020)
institution Universidad Simón Bolívar
bitstream.url.fl_str_mv https://bonga.unisimon.edu.co/bitstreams/bb7b7095-f43a-4d27-b83b-35143216aa19/download
https://bonga.unisimon.edu.co/bitstreams/9e5c7ea9-cfa3-483a-bf01-c576c5bc3d29/download
https://bonga.unisimon.edu.co/bitstreams/de374ac1-6528-4ef0-97ea-33594bab1b15/download
https://bonga.unisimon.edu.co/bitstreams/467ae0f7-2a61-49a0-9d45-098d86a60cfe/download
https://bonga.unisimon.edu.co/bitstreams/227f1c5f-6c7b-4d2b-9454-50603dcfc400/download
https://bonga.unisimon.edu.co/bitstreams/7cc8ed50-c3ee-4f1e-b41a-67b4067f5dfb/download
https://bonga.unisimon.edu.co/bitstreams/ea6b1991-58f7-4e36-b94b-37a91195bd1c/download
bitstream.checksum.fl_str_mv a84e3a6992ffa16f2e36376f9b40ae86
4460e5956bc1d1639be9ae6146a50347
733bec43a0bf5ade4d97db708e29b185
b723e19fe7b56699f59abc5f3ae06d3b
9452b06aad10b362c8363826accd4198
3e95c7ebc7557156081a79b12575fd0a
79056fc998b3e6bb49ff07e993bf2bce
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositorio Digital Universidad Simón Bolívar
repository.mail.fl_str_mv repositorio.digital@unisimon.edu.co
_version_ 1812100471006953472
spelling Lozano-Solano, Dayan221d37ce-8827-4561-a622-b4026a766da1Reales-González, Jhonnataneeea42c2-9f7b-44c0-866e-02ffc63e2740Catoe, Heath W.084673cd-de49-4cf0-bcc4-53011f4d0a87Raya, Raul R.9d580534-e7df-45b3-8a0e-e98394721b47Acosta-Hoyosa, Antonio J.89c305bf-74e0-4528-9d46-7260bb60f3d82020-04-13T17:21:45Z2020-04-13T17:21:45Z20202576098Xhttps://hdl.handle.net/20.500.12442/5096https:// doi.org/10.1128/MRA.00147-20Here, we report the genome sequence of a Siphoviridae phage named vB_SauS_BaqSau1 (BaqSau1), infecting Staphylococcus aureus. Phage BaqSau1 was isolated from a sewage water treatment plant in Sahagún, Córdoba, Colombia. It has a double-stranded DNA (dsDNA) genome of 44,384 bp with 67 predicted genes, including a lysin containing a CHAP (cysteine, histidine-dependent amidohydrolase/ peptidase) domain.pdfengAmerican Society for MicrobiologyAttribution-NonCommercial-NoDerivatives 4.0 Internacionalhttp://creativecommons.org/licenses/by-nc-nd/4.0/http://purl.org/coar/access_right/c_abf2Microbiology Resource AnnouncementsVol. 9,No. 15 (2020)Genoma de ADNProblemas de saludInfecciones bacterianasResistencia a antibióticosGenome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1articlearticlehttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Drulis-Kawa Z, Majkowska-Skrobek G, Maciejewska B. 2015. Bacteriophages and phage-derived proteins—application approaches. Curr Med Chem 22:1757–1773. https://doi.org/10.2174/0929867322666 150209152851Nair D, Memmi G, Hernandez D, Bard J, Beaume M, Gill S, Francois P, Cheung AL. 2011. Whole-genome sequencing of Staphylococcus aureus strain RN4220, a key laboratory strain used in virulence research, identifies mutations that affect not only virulence factors but also the fitness of the strain. J Bacteriol 193:2332–2335. https://doi.org/10.1128/JB .00027-11.Van Twest R, Kropinski AM. 2009. Bacteriophage enrichment from water and soil. Methods Mol Biol 501:15–21. https://doi.org/10.1007/978-1 -60327-164-6_2. Kropinski AM, Mazzocco A, Waddell TE, Lingohr E, Johnson RP. 2009. Enumeration of bacteriophages by double agar overlay plaque assay. Methods Mol Biol 501:69 –76. https://doi.org/10.1007/978-1-60327-164 -6_7.Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114 –2120. https://doi.org/10 .1093/bioinformatics/btu170Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455– 477. https://doi.org/10.1089/cmb.2012.0021Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: Rapid Annotations using Subsystems Technology. BMC Genomics 9:75. https://doi.org/10.1186/1471-2164-9-75Zimmermann L, Stephens A, Nam S-Z, Rau D, Kubler J, Lozajic M, Gabler F, Soding J, Lupas AN, Alva V. 2018. A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core. J Mol Biol 430:2237–2243. https://doi.org/10.1016/j.jmb.2017.12.007Richter M, Rosselló-Móra R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad SciUSA 106: 19126 –19131. https://doi.org/10.1073/pnas.0906412106Figueras MJ, Beaz-Hidalgo R, Hossain MJ, Liles MR. 2014. Taxonomic affiliation of new genomes should be verified using average nucleotide identity and multilocus phylogenetic analysis. Genome Announc 2:e00927-14. https://doi.org/10.1128/genomeA.00927-14.Arahal DR. 2014. Whole-genome analyses: average nucleotide identity, p 103–122. In Goodfellow M, Sutcliffe I, Chun J (ed), New approaches to prokaryotic systematics. Academic Press, Cambridge, MA.Lozano D, Díaz L, Echeverry M, Pineda S, Máttar S. 2010. PVL positive methicillin-resistant Staphylococcus aureus (MRSAs) strains isolated from healthy individuals in Montería, Córdoba. Univ Sci (Bogota) 15: 159 –165. (In Spanish.) https://doi.org/10.11144/javeriana.SC15-2.ppmrAlite C, Humphrey S, Donderis J, Maiques E, Ciges-Tomas JR, Penadés JR, Marina A. 2017. Dissecting the link between the enzymatic activity and the SaPI inducing capacity of the phage 80 dUTPase. Sci Rep 7:11234. https://doi.org/10.1038/s41598-017-11234-9.Bateman A, Rawlings ND. 2003. The CHAP domain: a large family of amidases including GSP amidase and peptidoglycan hydrolases. Trends Biochem Sci 28:234 –237. https://doi.org/10.1016/S0968-0004(03) 00061-6.Becker SC, Foster-Frey J, Donovan DM. 2008. The phage K lytic enzyme LysK and lysostaphin act synergistically to kill MRSA. FEMS Microbiol Lett 287:185–191. https://doi.org/10.1111/j.1574-6968.2008.01308.x.ORIGINALPDF.pdfPDF.pdfPDFapplication/pdf837145https://bonga.unisimon.edu.co/bitstreams/bb7b7095-f43a-4d27-b83b-35143216aa19/downloada84e3a6992ffa16f2e36376f9b40ae86MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8805https://bonga.unisimon.edu.co/bitstreams/9e5c7ea9-cfa3-483a-bf01-c576c5bc3d29/download4460e5956bc1d1639be9ae6146a50347MD52LICENSElicense.txtlicense.txttext/plain; charset=utf-8381https://bonga.unisimon.edu.co/bitstreams/de374ac1-6528-4ef0-97ea-33594bab1b15/download733bec43a0bf5ade4d97db708e29b185MD53TEXTMicrobiology_Resource Announcements_2020-Lozano-Solano-e00147-20.full.pdf.txtMicrobiology_Resource Announcements_2020-Lozano-Solano-e00147-20.full.pdf.txtExtracted texttext/plain10614https://bonga.unisimon.edu.co/bitstreams/467ae0f7-2a61-49a0-9d45-098d86a60cfe/downloadb723e19fe7b56699f59abc5f3ae06d3bMD54PDF.pdf.txtPDF.pdf.txtExtracted texttext/plain12540https://bonga.unisimon.edu.co/bitstreams/227f1c5f-6c7b-4d2b-9454-50603dcfc400/download9452b06aad10b362c8363826accd4198MD56THUMBNAILMicrobiology_Resource Announcements_2020-Lozano-Solano-e00147-20.full.pdf.jpgMicrobiology_Resource Announcements_2020-Lozano-Solano-e00147-20.full.pdf.jpgGenerated Thumbnailimage/jpeg1793https://bonga.unisimon.edu.co/bitstreams/7cc8ed50-c3ee-4f1e-b41a-67b4067f5dfb/download3e95c7ebc7557156081a79b12575fd0aMD55PDF.pdf.jpgPDF.pdf.jpgGenerated Thumbnailimage/jpeg5822https://bonga.unisimon.edu.co/bitstreams/ea6b1991-58f7-4e36-b94b-37a91195bd1c/download79056fc998b3e6bb49ff07e993bf2bceMD5720.500.12442/5096oai:bonga.unisimon.edu.co:20.500.12442/50962024-08-14 21:52:18.272http://creativecommons.org/licenses/by-nc-nd/4.0/Attribution-NonCommercial-NoDerivatives 4.0 Internacionalopen.accesshttps://bonga.unisimon.edu.coRepositorio Digital Universidad Simón Bolívarrepositorio.digital@unisimon.edu.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

Publicaciones similares