Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1
Here, we report the genome sequence of a Siphoviridae phage named vB_SauS_BaqSau1 (BaqSau1), infecting Staphylococcus aureus. Phage BaqSau1 was isolated from a sewage water treatment plant in Sahagún, Córdoba, Colombia. It has a double-stranded DNA (dsDNA) genome of 44,384 bp with 67 predicted genes...
- Autores:
-
Lozano-Solano, Dayan
- Tipo de recurso:
- Fecha de publicación:
- 2020
- Institución:
- Universidad del Atlántico
- Repositorio:
- Repositorio Uniatlantico
- Idioma:
- eng
- OAI Identifier:
- oai:repositorio.uniatlantico.edu.co:20.500.12834/975
- Acceso en línea:
- https://hdl.handle.net/20.500.12834/975
- Palabra clave:
- double stranded, DNAgenomic, DNAvirus DNA, rticlebacterial strainColombiaDNA sequenceDNA sequencingnonhumannucleotide sequencesewage treatmentSiphoviridaeStaphylococcus aureusStaphylococcus phagevirus genevirus genomevirus strainwhole genome sequencing
- Rights
- openAccess
- License
- http://creativecommons.org/licenses/by-nc/4.0/
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| dc.title.spa.fl_str_mv |
Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1 |
| title |
Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1 |
| spellingShingle |
Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1 double stranded, DNAgenomic, DNAvirus DNA, rticlebacterial strainColombiaDNA sequenceDNA sequencingnonhumannucleotide sequencesewage treatmentSiphoviridaeStaphylococcus aureusStaphylococcus phagevirus genevirus genomevirus strainwhole genome sequencing |
| title_short |
Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1 |
| title_full |
Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1 |
| title_fullStr |
Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1 |
| title_full_unstemmed |
Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1 |
| title_sort |
Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1 |
| dc.creator.fl_str_mv |
Lozano-Solano, Dayan |
| dc.contributor.author.none.fl_str_mv |
Lozano-Solano, Dayan |
| dc.contributor.other.none.fl_str_mv |
Reales-González, Jhonnatan Catoe, Heath W. Raya, Raul R. Acosta-Hoyosa, Antonio J. |
| dc.subject.keywords.spa.fl_str_mv |
double stranded, DNAgenomic, DNAvirus DNA, rticlebacterial strainColombiaDNA sequenceDNA sequencingnonhumannucleotide sequencesewage treatmentSiphoviridaeStaphylococcus aureusStaphylococcus phagevirus genevirus genomevirus strainwhole genome sequencing |
| topic |
double stranded, DNAgenomic, DNAvirus DNA, rticlebacterial strainColombiaDNA sequenceDNA sequencingnonhumannucleotide sequencesewage treatmentSiphoviridaeStaphylococcus aureusStaphylococcus phagevirus genevirus genomevirus strainwhole genome sequencing |
| description |
Here, we report the genome sequence of a Siphoviridae phage named vB_SauS_BaqSau1 (BaqSau1), infecting Staphylococcus aureus. Phage BaqSau1 was isolated from a sewage water treatment plant in Sahagún, Córdoba, Colombia. It has a double-stranded DNA (dsDNA) genome of 44,384 bp with 67 predicted genes, including a lysin containing a CHAP (cysteine, histidine-dependent amidohydrolase/ peptidase) domain. |
| publishDate |
2020 |
| dc.date.issued.none.fl_str_mv |
2020-04-09 |
| dc.date.submitted.none.fl_str_mv |
2020-02-14 |
| dc.date.accessioned.none.fl_str_mv |
2022-11-15T21:19:30Z |
| dc.date.available.none.fl_str_mv |
2022-11-15T21:19:30Z |
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http://purl.org/coar/version/c_970fb48d4fbd8a85 |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
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info:eu-repo/semantics/article |
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info:eu-repo/semantics/publishedVersion |
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Artículo |
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publishedVersion |
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https://hdl.handle.net/20.500.12834/975 |
| dc.identifier.doi.none.fl_str_mv |
10.1128/MRA.00147-20. |
| dc.identifier.instname.spa.fl_str_mv |
Universidad del Atlántico |
| dc.identifier.reponame.spa.fl_str_mv |
Repositorio Universidad del Atlántico |
| url |
https://hdl.handle.net/20.500.12834/975 |
| identifier_str_mv |
10.1128/MRA.00147-20. Universidad del Atlántico Repositorio Universidad del Atlántico |
| dc.language.iso.spa.fl_str_mv |
eng |
| language |
eng |
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http://purl.org/coar/access_right/c_abf2 |
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http://creativecommons.org/licenses/by-nc/4.0/ |
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Attribution-NonCommercial 4.0 International |
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info:eu-repo/semantics/openAccess |
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http://creativecommons.org/licenses/by-nc/4.0/ Attribution-NonCommercial 4.0 International http://purl.org/coar/access_right/c_abf2 |
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openAccess |
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application/pdf |
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Barranquilla |
| dc.publisher.discipline.spa.fl_str_mv |
Biología |
| dc.publisher.sede.spa.fl_str_mv |
Sede Norte |
| dc.source.spa.fl_str_mv |
American Society for Microbiology |
| institution |
Universidad del Atlántico |
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Lozano-Solano, Dayanffadfee3-a79e-4570-bc8d-9dcada95e9b8Reales-González, JhonnatanCatoe, Heath W.Raya, Raul R.Acosta-Hoyosa, Antonio J.2022-11-15T21:19:30Z2022-11-15T21:19:30Z2020-04-092020-02-14https://hdl.handle.net/20.500.12834/97510.1128/MRA.00147-20.Universidad del AtlánticoRepositorio Universidad del AtlánticoHere, we report the genome sequence of a Siphoviridae phage named vB_SauS_BaqSau1 (BaqSau1), infecting Staphylococcus aureus. Phage BaqSau1 was isolated from a sewage water treatment plant in Sahagún, Córdoba, Colombia. It has a double-stranded DNA (dsDNA) genome of 44,384 bp with 67 predicted genes, including a lysin containing a CHAP (cysteine, histidine-dependent amidohydrolase/ peptidase) domain.application/pdfenghttp://creativecommons.org/licenses/by-nc/4.0/Attribution-NonCommercial 4.0 Internationalinfo:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2American Society for MicrobiologyGenome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1Público generaldouble stranded, DNAgenomic, DNAvirus DNA, rticlebacterial strainColombiaDNA sequenceDNA sequencingnonhumannucleotide sequencesewage treatmentSiphoviridaeStaphylococcus aureusStaphylococcus phagevirus genevirus genomevirus strainwhole genome sequencinginfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_2df8fbb1BarranquillaBiologíaSede Norte1. Drulis-Kawa Z, Majkowska-Skrobek G, Maciejewska B. 2015. Bacteriophages and phage-derived proteins—application approaches. Curr Med Chem 22:1757–1773. https://doi.org/10.2174/0929867322666 150209152851.2. Nair D, Memmi G, Hernandez D, Bard J, Beaume M, Gill S, Francois P, Cheung AL. 2011. Whole-genome sequencing of Staphylococcus aureus strain RN4220, a key laboratory strain used in virulence research, identifies mutations that affect not only virulence factors but also the fitness of the strain. J Bacteriol 193:2332–2335. https://doi.org/10.1128/JB .00027-11.3. Van Twest R, Kropinski AM. 2009. Bacteriophage enrichment from water and soil. Methods Mol Biol 501:15–21. https://doi.org/10.1007/978-1 -60327-164-6_2.4. Kropinski AM, Mazzocco A, Waddell TE, Lingohr E, Johnson RP. 2009. Enumeration of bacteriophages by double agar overlay plaque assay. Methods Mol Biol 501:69 –76. https://doi.org/10.1007/978-1-60327-164 -6_7.5. Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114 –2120. https://doi.org/10 .1093/bioinformatics/btu170.6. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455– 477. https://doi.org/10.1089/cmb.2012.0021.7. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: Rapid Annotations using Subsystems Technology. BMC Genomics 9:75. https://doi.org/10.1186/1471-2164-9-75.8. Zimmermann L, Stephens A, Nam S-Z, Rau D, Kubler J, Lozajic M, Gabler F, Soding J, Lupas AN, Alva V. 2018. A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core. J Mol Biol 430:2237–2243. https://doi.org/10.1016/j.jmb.2017.12.007.9. Richter M, Rosselló-Móra R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 106: 19126–19131. https://doi.org/10.1073/pnas.0906412106.10. Figueras MJ, Beaz-Hidalgo R, Hossain MJ, Liles MR. 2014. Taxonomic affiliation of new genomes should be verified using average nucleotide identity and multilocus phylogenetic analysis. Genome Announc 2:e00927-14. https://doi.org/10.1128/genomeA.00927-14.11. Arahal DR. 2014. Whole-genome analyses: average nucleotide identity, p 103–122. In Goodfellow M, Sutcliffe I, Chun J (ed), New approaches to prokaryotic systematics. Academic Press, Cambridge, MA.12. Lozano D, Díaz L, Echeverry M, Pineda S, Máttar S. 2010. PVL positive methicillin-resistant Staphylococcus aureus (MRSAs) strains isolated from healthy individuals in Montería, Córdoba. Univ Sci (Bogota) 15: 159–165. (In Spanish.) https://doi.org/10.11144/javeriana.SC15-2.ppmr.13. Alite C, Humphrey S, Donderis J, Maiques E, Ciges-Tomas JR, Penadés JR, Marina A. 2017. Dissecting the link between the enzymatic activity and the SaPI inducing capacity of the phage 80 dUTPase. Sci Rep 7:11234. https://doi.org/10.1038/s41598-017-11234-9.14. Bateman A, Rawlings ND. 2003. The CHAP domain: a large family of amidases including GSP amidase and peptidoglycan hydrolases. Trends Biochem Sci 28:234 –237. https://doi.org/10.1016/S0968-0004(03) 00061-6.15. Becker SC, Foster-Frey J, Donovan DM. 2008. The phage K lytic enzyme LysK and lysostaphin act synergistically to kill MRSA. FEMS Microbiol Lett 287:185–191. https://doi.org/10.1111/j.1574-6968.2008.01308.x.http://purl.org/coar/resource_type/c_6501ORIGINALmra.00147-20.pdfmra.00147-20.pdfapplication/pdf960823https://repositorio.uniatlantico.edu.co/bitstream/20.500.12834/975/1/mra.00147-20.pdf3487e0f9089a72a75e0b8ee355c1b7b7MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8914https://repositorio.uniatlantico.edu.co/bitstream/20.500.12834/975/2/license_rdf24013099e9e6abb1575dc6ce0855efd5MD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81306https://repositorio.uniatlantico.edu.co/bitstream/20.500.12834/975/3/license.txt67e239713705720ef0b79c50b2ececcaMD5320.500.12834/975oai:repositorio.uniatlantico.edu.co:20.500.12834/9752022-11-15 16:19:30.893DSpace de la Universidad de Atlánticosysadmin@mail.uniatlantico.edu.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 |