Dominios de interacción entre la proteína efectora XopAE de Xanthomonas phaseoli pv. manihotis y la patelina 3 en Arabidopsis thaliana
Con el fin de comprender la forma en que Xanthomonas phaseoli pv. manihotis causa enfermedad en yuca, se evaluó la interacción molecular entre el efector XopAE de esta bacteria y la patelina 3, su posible proteína blanco. Para ello, se empleó como modelo Arabidopsis thaliana con su proteína homóloga...
- Autores:
-
Bejarano Franco, Daniela
- Tipo de recurso:
- Trabajo de grado de pregrado
- Fecha de publicación:
- 2023
- Institución:
- Universidad de los Andes
- Repositorio:
- Séneca: repositorio Uniandes
- Idioma:
- spa
- OAI Identifier:
- oai:repositorio.uniandes.edu.co:1992/64345
- Acceso en línea:
- http://hdl.handle.net/1992/64345
- Palabra clave:
- Xanthomonas phaseoli pv. manihotis
Patelina 3
Dominio proteico
Doble híbrido de levadura
Microbiología
- Rights
- openAccess
- License
- Attribution-NonCommercial-NoDerivatives 4.0 Internacional
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Dominios de interacción entre la proteína efectora XopAE de Xanthomonas phaseoli pv. manihotis y la patelina 3 en Arabidopsis thaliana |
| title |
Dominios de interacción entre la proteína efectora XopAE de Xanthomonas phaseoli pv. manihotis y la patelina 3 en Arabidopsis thaliana |
| spellingShingle |
Dominios de interacción entre la proteína efectora XopAE de Xanthomonas phaseoli pv. manihotis y la patelina 3 en Arabidopsis thaliana Xanthomonas phaseoli pv. manihotis Patelina 3 Dominio proteico Doble híbrido de levadura Microbiología |
| title_short |
Dominios de interacción entre la proteína efectora XopAE de Xanthomonas phaseoli pv. manihotis y la patelina 3 en Arabidopsis thaliana |
| title_full |
Dominios de interacción entre la proteína efectora XopAE de Xanthomonas phaseoli pv. manihotis y la patelina 3 en Arabidopsis thaliana |
| title_fullStr |
Dominios de interacción entre la proteína efectora XopAE de Xanthomonas phaseoli pv. manihotis y la patelina 3 en Arabidopsis thaliana |
| title_full_unstemmed |
Dominios de interacción entre la proteína efectora XopAE de Xanthomonas phaseoli pv. manihotis y la patelina 3 en Arabidopsis thaliana |
| title_sort |
Dominios de interacción entre la proteína efectora XopAE de Xanthomonas phaseoli pv. manihotis y la patelina 3 en Arabidopsis thaliana |
| dc.creator.fl_str_mv |
Bejarano Franco, Daniela |
| dc.contributor.advisor.none.fl_str_mv |
Bernal Giraldo, Adriana Jimena |
| dc.contributor.author.none.fl_str_mv |
Bejarano Franco, Daniela |
| dc.contributor.jury.none.fl_str_mv |
Zimmermann, Barbara Hanna |
| dc.contributor.researchgroup.es_CO.fl_str_mv |
Laboratorio de Interacciones Moleculares de Microorganismos en Agricultura |
| dc.subject.keyword.none.fl_str_mv |
Xanthomonas phaseoli pv. manihotis Patelina 3 Dominio proteico Doble híbrido de levadura |
| topic |
Xanthomonas phaseoli pv. manihotis Patelina 3 Dominio proteico Doble híbrido de levadura Microbiología |
| dc.subject.themes.es_CO.fl_str_mv |
Microbiología |
| description |
Con el fin de comprender la forma en que Xanthomonas phaseoli pv. manihotis causa enfermedad en yuca, se evaluó la interacción molecular entre el efector XopAE de esta bacteria y la patelina 3, su posible proteína blanco. Para ello, se empleó como modelo Arabidopsis thaliana con su proteína homóloga para la patelina 3. Además se buscó determinar los dominios proteicos que permiten la interacción mediante el sistema de doble híbrido de levadura. |
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2023 |
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2023-01-30T21:42:45Z |
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2023-01-30T21:42:45Z |
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2023-01-30 |
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Anantharaman, V, & Aravind, L. (2002). The GOLD domain, a novel protein module involved in Golgi function and secretion. Genome Biology, 3(5), 1-7. Altschul, S., Madden, T., Schäffer, A., Zhang, J., Zhang, Z., Miller., & Lipman, D. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res. 25, 3389-3402. Andargie, M., & Li, J. (2016). Arabidopsis thaliana: A Model Host Plant to Study Plant-Pathogen Interaction Using Rice False Smut Isolates of Ustilaginoidea virens. Frontiers in Plant Science, 7. Boller, T., Felix, G. (2009). A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. Annual Review of Plant Biology, 60, 379-406. Bolton M.D (2009) Primary metabolism and plant defense--fuel for the fire. Molecular Plant Microbe Interactions, 22, 487-497. CLONTECH, 2001. Yeast Protocols Handbook - CLONTECH Laboratories, Inc. Couto, D & Zipfel, C. (2016) Regulation of pattern recognition receptor signalling in plants. Nature Reviews Immunology, 16, 537-552. Jones, J.D.G. & Dangl, J.L. (2006) The plant immune system. Nature, 444, 323-329. doi: 10.1038/nature05286 Jumper et al. (2021). Highly accurate protein structure prediction with AlphaFold. Nature. Khan, M., Seto, D., Subramaniam, R., & Desveaux D. (2017). Oh, the places they'll go! A survey of phytopathogen effectors and their host targets. The Plant Journal, 93(4), 651-663. Koegl, M & Uetz, P. (2008). Improving yeast two-hybrid screening systems. Functional Genomics and Proteomics. 6(4), 302-312. doi: 10.1093/bfgp/elm035 López, C. E., & Bernal, A. J. (2012). Cassava bacterial blight: using genomics for the elucidation and management of an old problem. Tropical Plant Biology, 5, 117-126. doi: 10.1007/s12042-011-9092-3 Mansfield, J., Genin, S., Magori, S., Citovsky, V., Sriariyanum, M., Ronald, P., et al. (2012). Top 10 plant pathogenic bacteria in molecular plant pathology. Molecular Plant Pathology, 13(6), 614-629. doi: 10.1111/j.1364-3703.2012.00804. Mohapatra, S., Ray, R.C., & Ramachandran, S. (2019). Bioethanol From Biorenewable Feedstocks: Technology, Economics, and Challenges. Bioethanol Production from Food Crops, 3-37. Peterman TK, Ohol YM, McReynolds LJ, Luna EJ. (2004). Patellin1, a novel Sec14-like protein, localizes to the cell plate and binds phosphoinositides. Plant Physiology, 136(2), 3080-3094. [PubMed: 15466235] Salvador, E.M., Steenkamp, V., & Mcrindle, C.M.E. (2014). Production, Consuption and nutritional value of cassava (Manihot esculenta, Crantz) in Mozambique: An overview. Journal of Agricultural Biotechnology and Sustainable Development, 6(3), 29-38. Scholthof KB. (2007) The disease triangle: pathogens, the environment and society. Nature Reviews Microbiology, 5(2),152-6. doi: 10.1038/nrmicro1596. Schreiber, K., Chau-Ly I., & Lewis, J. (2021). What the Wild Things Do: Mechanisms of Plant Host Manipulation by Bacterial Type III-Secreted Effector Proteins. Microorganisms, 9(5), 1029. Sierra, M. C. (2021). How to transport lipids: A brief history of patellins. [Monografía] Soto, J. C., Mora Moreno, R. E., Mathew, B., Léon, J., Gómez Cano, F. A., Ballvora, A., & López Carrascal, C. E. (2017). Major Novel QTL for Resistance to Cassava Bacterial Blight Identified through a Multi-Environmental Analysis. Frontiers in Plant Science, 8, 1169. Tejos, R. Rodriguez-Furlan, C. Adamowski, M. Sauer, M. Norambuena, L. Friml, J. (2017). PATELLINS are regulators of auxin-mediated PIN1 relocation and plant development in Arabidopsis thaliana. Journal of Cell Science. Trujillo, C. A., Hurtado, V., Gil, J., Joe, A., Garnica, D., Saur, I., Restrepo, S., Alfano, J. R., Rathjen, J., Lopez, C., & Bernal, A. (2013). HpaF from Xanthomonas axonopodis pv. Manihotis is a suppressor of basal defenses in plants by targeting three proteins in cassava. [Tesis Doctoral]. Varadi, M et al. (2021). AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. Nucleic Acids Research Wu, C., Tan, L., Van Hooren, M., Tan X., Liu, F., Li, Y., Zhao, Y., Li, B., Rui, Q., Munnik, T., & Bao, Y, (2017). Arabidopsis EXO70A1 recruits Patellin3 to the cell membrane independent of its role as an exocyst subunit. Journal of Integrative Plant Biology, 59(12), 851-865. doi: 10.1111/jipb.12578 Zárate- Chaves, C., Gómez de la cruz, D., Verdier, V., López, C., Bernal, A., & Szurek, B. (2021). Cassava diseases caused by Xanthomonas phaseoli pv. manihotis and Xanthomonas cassava. Molecular Plant Pathology, 22(12), 1520-1537. Zhou, H., Duan, H., Liu, Y., Sun, X., Zhao, J., Lin, H. (2019). Patellin protein family functions in plant development and stress response. Journal of Plant Physiology, 234-235, 94-97. doi: 10.1016/j.jplph.2019.01.012 |
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Attribution-NonCommercial-NoDerivatives 4.0 Internacionalhttps://repositorio.uniandes.edu.co/static/pdf/aceptacion_uso_es.pdfinfo:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Bernal Giraldo, Adriana Jimenavirtual::15328-1Bejarano Franco, Daniela7376da02-b1fc-44e8-ad1b-047d3dd087fc600Zimmermann, Barbara HannaLaboratorio de Interacciones Moleculares de Microorganismos en Agricultura2023-01-30T21:42:45Z2023-01-30T21:42:45Z2023-01-30http://hdl.handle.net/1992/64345instname:Universidad de los Andesreponame:Repositorio Institucional Sénecarepourl:https://repositorio.uniandes.edu.co/Con el fin de comprender la forma en que Xanthomonas phaseoli pv. manihotis causa enfermedad en yuca, se evaluó la interacción molecular entre el efector XopAE de esta bacteria y la patelina 3, su posible proteína blanco. Para ello, se empleó como modelo Arabidopsis thaliana con su proteína homóloga para la patelina 3. Además se buscó determinar los dominios proteicos que permiten la interacción mediante el sistema de doble híbrido de levadura.MicrobiólogoPregrado20 páginasapplication/pdfspaUniversidad de los AndesMicrobiologíaFacultad de CienciasDepartamento de Ciencias BiológicasDominios de interacción entre la proteína efectora XopAE de Xanthomonas phaseoli pv. manihotis y la patelina 3 en Arabidopsis thalianaTrabajo de grado - Pregradoinfo:eu-repo/semantics/bachelorThesisinfo:eu-repo/semantics/acceptedVersionhttp://purl.org/coar/resource_type/c_7a1fTexthttp://purl.org/redcol/resource_type/TPXanthomonas phaseoli pv. manihotisPatelina 3Dominio proteicoDoble híbrido de levaduraMicrobiologíaAnantharaman, V, & Aravind, L. (2002). The GOLD domain, a novel protein module involved in Golgi function and secretion. Genome Biology, 3(5), 1-7.Altschul, S., Madden, T., Schäffer, A., Zhang, J., Zhang, Z., Miller., & Lipman, D. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res. 25, 3389-3402.Andargie, M., & Li, J. (2016). Arabidopsis thaliana: A Model Host Plant to Study Plant-Pathogen Interaction Using Rice False Smut Isolates of Ustilaginoidea virens. Frontiers in Plant Science, 7.Boller, T., Felix, G. (2009). A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. Annual Review of Plant Biology, 60, 379-406.Bolton M.D (2009) Primary metabolism and plant defense--fuel for the fire. Molecular Plant Microbe Interactions, 22, 487-497.CLONTECH, 2001. Yeast Protocols Handbook - CLONTECH Laboratories, Inc.Couto, D & Zipfel, C. (2016) Regulation of pattern recognition receptor signalling in plants. Nature Reviews Immunology, 16, 537-552.Jones, J.D.G. & Dangl, J.L. (2006) The plant immune system. Nature, 444, 323-329. doi: 10.1038/nature05286Jumper et al. (2021). Highly accurate protein structure prediction with AlphaFold. Nature.Khan, M., Seto, D., Subramaniam, R., & Desveaux D. (2017). Oh, the places they'll go! A survey of phytopathogen effectors and their host targets. The Plant Journal, 93(4), 651-663.Koegl, M & Uetz, P. (2008). Improving yeast two-hybrid screening systems. Functional Genomics and Proteomics. 6(4), 302-312. doi: 10.1093/bfgp/elm035López, C. E., & Bernal, A. J. (2012). Cassava bacterial blight: using genomics for the elucidation and management of an old problem. Tropical Plant Biology, 5, 117-126. doi: 10.1007/s12042-011-9092-3Mansfield, J., Genin, S., Magori, S., Citovsky, V., Sriariyanum, M., Ronald, P., et al. (2012). Top 10 plant pathogenic bacteria in molecular plant pathology. Molecular Plant Pathology, 13(6), 614-629. doi: 10.1111/j.1364-3703.2012.00804.Mohapatra, S., Ray, R.C., & Ramachandran, S. (2019). Bioethanol From Biorenewable Feedstocks: Technology, Economics, and Challenges. Bioethanol Production from Food Crops, 3-37.Peterman TK, Ohol YM, McReynolds LJ, Luna EJ. (2004). Patellin1, a novel Sec14-like protein, localizes to the cell plate and binds phosphoinositides. Plant Physiology, 136(2), 3080-3094. [PubMed: 15466235] Salvador, E.M., Steenkamp, V., & Mcrindle, C.M.E. (2014). Production, Consuption and nutritional value of cassava (Manihot esculenta, Crantz) in Mozambique: An overview. Journal of Agricultural Biotechnology and Sustainable Development, 6(3), 29-38.Scholthof KB. (2007) The disease triangle: pathogens, the environment and society. Nature Reviews Microbiology, 5(2),152-6. doi: 10.1038/nrmicro1596.Schreiber, K., Chau-Ly I., & Lewis, J. (2021). What the Wild Things Do: Mechanisms of Plant Host Manipulation by Bacterial Type III-Secreted Effector Proteins. Microorganisms, 9(5), 1029. Sierra, M. C. (2021). How to transport lipids: A brief history of patellins. [Monografía]Soto, J. C., Mora Moreno, R. E., Mathew, B., Léon, J., Gómez Cano, F. A., Ballvora, A., & López Carrascal, C. E. (2017). Major Novel QTL for Resistance to Cassava Bacterial Blight Identified through a Multi-Environmental Analysis. Frontiers in Plant Science, 8, 1169.Tejos, R. Rodriguez-Furlan, C. Adamowski, M. Sauer, M. Norambuena, L. Friml, J. (2017). PATELLINS are regulators of auxin-mediated PIN1 relocation and plant development in Arabidopsis thaliana. Journal of Cell Science. Trujillo, C. A., Hurtado, V., Gil, J., Joe, A., Garnica, D., Saur, I., Restrepo, S., Alfano, J. R., Rathjen, J., Lopez, C., & Bernal, A. (2013). HpaF from Xanthomonas axonopodis pv. Manihotis is a suppressor of basal defenses in plants by targeting three proteins in cassava. [Tesis Doctoral]. Varadi, M et al. (2021). AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. Nucleic Acids ResearchWu, C., Tan, L., Van Hooren, M., Tan X., Liu, F., Li, Y., Zhao, Y., Li, B., Rui, Q., Munnik, T., & Bao, Y, (2017). Arabidopsis EXO70A1 recruits Patellin3 to the cell membrane independent of its role as an exocyst subunit. Journal of Integrative Plant Biology, 59(12), 851-865. doi: 10.1111/jipb.12578Zárate- Chaves, C., Gómez de la cruz, D., Verdier, V., López, C., Bernal, A., & Szurek, B. (2021). Cassava diseases caused by Xanthomonas phaseoli pv. manihotis and Xanthomonas cassava. Molecular Plant Pathology, 22(12), 1520-1537.Zhou, H., Duan, H., Liu, Y., Sun, X., Zhao, J., Lin, H. (2019). Patellin protein family functions in plant development and stress response. 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