Confirmation of Computational Biology Predictions on Cross-Reactivity in the Identification of American Manatee (Trichechus manatus) IgA
Immunological research in wildlife presents a unique opportunity to acquire crucial information about animal and ecosystem health. However, it is often limited by the lack of species-specific reagents and understanding of immune systems in wildlife. For the American manatee (Trichechus manatus), the...
- Autores:
-
Diaz Yayguaje, Mariapaula
- Tipo de recurso:
- Trabajo de grado de pregrado
- Fecha de publicación:
- 2024
- Institución:
- Universidad de los Andes
- Repositorio:
- Séneca: repositorio Uniandes
- Idioma:
- eng
- OAI Identifier:
- oai:repositorio.uniandes.edu.co:1992/74971
- Acceso en línea:
- https://hdl.handle.net/1992/74971
- Palabra clave:
- Immunoglobulin A
Immunoassays
Confirmation of computational predictions
Cross-reactivity
American manatee
Microbiología
- Rights
- embargoedAccess
- License
- Attribution 4.0 International
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dc.title.eng.fl_str_mv |
Confirmation of Computational Biology Predictions on Cross-Reactivity in the Identification of American Manatee (Trichechus manatus) IgA |
title |
Confirmation of Computational Biology Predictions on Cross-Reactivity in the Identification of American Manatee (Trichechus manatus) IgA |
spellingShingle |
Confirmation of Computational Biology Predictions on Cross-Reactivity in the Identification of American Manatee (Trichechus manatus) IgA Immunoglobulin A Immunoassays Confirmation of computational predictions Cross-reactivity American manatee Microbiología |
title_short |
Confirmation of Computational Biology Predictions on Cross-Reactivity in the Identification of American Manatee (Trichechus manatus) IgA |
title_full |
Confirmation of Computational Biology Predictions on Cross-Reactivity in the Identification of American Manatee (Trichechus manatus) IgA |
title_fullStr |
Confirmation of Computational Biology Predictions on Cross-Reactivity in the Identification of American Manatee (Trichechus manatus) IgA |
title_full_unstemmed |
Confirmation of Computational Biology Predictions on Cross-Reactivity in the Identification of American Manatee (Trichechus manatus) IgA |
title_sort |
Confirmation of Computational Biology Predictions on Cross-Reactivity in the Identification of American Manatee (Trichechus manatus) IgA |
dc.creator.fl_str_mv |
Diaz Yayguaje, Mariapaula |
dc.contributor.advisor.none.fl_str_mv |
Valderrama Aguirre, Augusto Elias Caballero Gaitán, Susana Josefina |
dc.contributor.author.none.fl_str_mv |
Diaz Yayguaje, Mariapaula |
dc.contributor.researchgroup.none.fl_str_mv |
Facultad de Ciencias::Laboratorio de Ecologia Molecular de Vertebrados Acuaticos |
dc.subject.keyword.eng.fl_str_mv |
Immunoglobulin A Immunoassays Confirmation of computational predictions Cross-reactivity American manatee |
topic |
Immunoglobulin A Immunoassays Confirmation of computational predictions Cross-reactivity American manatee Microbiología |
dc.subject.themes.spa.fl_str_mv |
Microbiología |
description |
Immunological research in wildlife presents a unique opportunity to acquire crucial information about animal and ecosystem health. However, it is often limited by the lack of species-specific reagents and understanding of immune systems in wildlife. For the American manatee (Trichechus manatus), there is a notable gap in information regarding their immune molecules, and their impact on animal health, particularly the lack of IgA transfer in orphaned manatee calves fed with milk supplements. Immunoinformatic predictions suggested cross-reactivity between manatee IgA and anti-human polyclonal reagents due to the similarity of human and manatee IgA. The present study aimed to confirm this cross-reactivity with manatee IgA in milk samples. A dot blot assay verified the reagent's functionality and cross-reactivity with manatee samples. Immunoblotting identified the protein in manatee milk, followed by direct ELISA to optimize reagent dilutions. Cross-reactivity with a milk protein was observed in all three assays. Manatee proteins ranged from 39-46 kD, while human IgA used as a positive control weighed 61 kD. The 1:2000 reagent dilution showed the highest signal/noise ratio, indicating optimal concentration. Despite molecular weight differences preventing definitive confirmation of the identified protein as manatee IgA, partial validation of immunoinformatic predictions was achieved. These findings provide researchers a model for identifying effective reagents, reducing costs using non-specific reagents. Future studies with higher quality samples are needed to confirm and explore IgA's role in manatee health and improve the quality of the supplements used in rehabilitation centers. |
publishDate |
2024 |
dc.date.accessioned.none.fl_str_mv |
2024-08-05T13:18:28Z |
dc.date.available.none.fl_str_mv |
2024-08-05T13:18:28Z |
dc.date.issued.none.fl_str_mv |
2024-08-02 |
dc.date.accepted.none.fl_str_mv |
2024-08-05 |
dc.type.none.fl_str_mv |
Trabajo de grado - Pregrado |
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info:eu-repo/semantics/bachelorThesis |
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info:eu-repo/semantics/acceptedVersion |
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http://purl.org/coar/resource_type/c_7a1f |
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https://hdl.handle.net/1992/74971 |
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reponame:Repositorio Institucional Séneca |
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repourl:https://repositorio.uniandes.edu.co/ |
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dc.language.iso.none.fl_str_mv |
eng |
language |
eng |
dc.rights.en.fl_str_mv |
Attribution 4.0 International |
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http://creativecommons.org/licenses/by/4.0/ |
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22 páginas |
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Universidad de los Andes |
dc.publisher.program.none.fl_str_mv |
Microbiología |
dc.publisher.faculty.none.fl_str_mv |
Facultad de Ciencias |
dc.publisher.department.spa.fl_str_mv |
Departamento de Ciencias Biológicas |
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Universidad de los Andes |
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Universidad de los Andes |
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Valderrama Aguirre, Augusto Eliasvirtual::19776-1Caballero Gaitán, Susana Josefinavirtual::19777-1Diaz Yayguaje, MariapaulaFacultad de Ciencias::Laboratorio de Ecologia Molecular de Vertebrados Acuaticos2024-08-05T13:18:28Z2024-08-05T13:18:28Z2024-08-022024-08-05https://hdl.handle.net/1992/74971instname:Universidad de los Andesreponame:Repositorio Institucional Sénecarepourl:https://repositorio.uniandes.edu.co/Immunological research in wildlife presents a unique opportunity to acquire crucial information about animal and ecosystem health. However, it is often limited by the lack of species-specific reagents and understanding of immune systems in wildlife. For the American manatee (Trichechus manatus), there is a notable gap in information regarding their immune molecules, and their impact on animal health, particularly the lack of IgA transfer in orphaned manatee calves fed with milk supplements. Immunoinformatic predictions suggested cross-reactivity between manatee IgA and anti-human polyclonal reagents due to the similarity of human and manatee IgA. The present study aimed to confirm this cross-reactivity with manatee IgA in milk samples. A dot blot assay verified the reagent's functionality and cross-reactivity with manatee samples. Immunoblotting identified the protein in manatee milk, followed by direct ELISA to optimize reagent dilutions. Cross-reactivity with a milk protein was observed in all three assays. Manatee proteins ranged from 39-46 kD, while human IgA used as a positive control weighed 61 kD. The 1:2000 reagent dilution showed the highest signal/noise ratio, indicating optimal concentration. Despite molecular weight differences preventing definitive confirmation of the identified protein as manatee IgA, partial validation of immunoinformatic predictions was achieved. These findings provide researchers a model for identifying effective reagents, reducing costs using non-specific reagents. Future studies with higher quality samples are needed to confirm and explore IgA's role in manatee health and improve the quality of the supplements used in rehabilitation centers.Pregrado22 páginasapplication/pdfapplication/xmlengUniversidad de los AndesMicrobiologíaFacultad de CienciasDepartamento de Ciencias BiológicasAttribution 4.0 Internationalhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/embargoedAccesshttp://purl.org/coar/access_right/c_f1cfConfirmation of Computational Biology Predictions on Cross-Reactivity in the Identification of American Manatee (Trichechus manatus) IgATrabajo de grado - Pregradoinfo:eu-repo/semantics/bachelorThesisinfo:eu-repo/semantics/acceptedVersionhttp://purl.org/coar/resource_type/c_7a1fTexthttp://purl.org/redcol/resource_type/TPImmunoglobulin AImmunoassaysConfirmation of computational predictionsCross-reactivityAmerican manateeMicrobiología201922171Publicationhttps://scholar.google.es/citations?user=sMRDr-wAAAAJvirtual::19776-1https://scholar.google.es/citations?user=sMRDr-wAAAAJ0000-0002-5255-1440virtual::19776-10000-0002-5255-14400000-0002-9285-3873virtual::19777-10000-0002-9285-3873https://scienti.minciencias.gov.co/cvlac/visualizador/generarCurriculoCv.do?cod_rh=0000253944virtual::19776-1https://scienti.minciencias.gov.co/cvlac/visualizador/generarCurriculoCv.do?cod_rh=0000253944https://scienti.minciencias.gov.co/cvlac/visualizador/generarCurriculoCv.do?cod_rh=0000686603virtual::19777-1https://scienti.minciencias.gov.co/cvlac/visualizador/generarCurriculoCv.do?cod_rh=0000686603d4e1348f-39c0-4961-8b1c-621c08f4fb2avirtual::19776-11735065d-7c92-4011-b244-8e579ec9f57cvirtual::19777-1d4e1348f-39c0-4961-8b1c-621c08f4fb2a1735065d-7c92-4011-b244-8e579ec9f57cd4e1348f-39c0-4961-8b1c-621c08f4fb2avirtual::19776-11735065d-7c92-4011-b244-8e579ec9f57cvirtual::19777-1ORIGINALConfirmation of Computational Biology Predictions on Cross-Reactivity in the Identification of American Manatee (Trichechus manatus) IgA.pdfConfirmation of Computational Biology Predictions on Cross-Reactivity in the Identification of American Manatee (Trichechus manatus) IgA.pdfLos resultados serán publicados en una revista científica por lo que no se pueden publicar en otro repositorio. 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