Effects of gene expression noise on phenotype and cooperate-defect fitness

The models of evolutionary dynamics are usually based in a fixed background fitness, and when they include cooperation, they also include a fixed degree of cooperation. However, in a biological system each individual is going to have different fitness and cooperate in different degrees due to phenot...

Full description

Autores:
Mahecha González, Luis Alejandro
Tipo de recurso:
Fecha de publicación:
2012
Institución:
Universidad de los Andes
Repositorio:
Séneca: repositorio Uniandes
Idioma:
eng
OAI Identifier:
oai:repositorio.uniandes.edu.co:1992/12168
Acceso en línea:
http://hdl.handle.net/1992/12168
Palabra clave:
Expresión génica - Investigaciones
Fenotipos - Investigaciones
Aptitudes físicas - Investigaciones
Física
Rights
openAccess
License
http://creativecommons.org/licenses/by-nc-sa/4.0/
id UNIANDES2_a4bdd01510bfe5bc9c8892744ef2a1b4
oai_identifier_str oai:repositorio.uniandes.edu.co:1992/12168
network_acronym_str UNIANDES2
network_name_str Séneca: repositorio Uniandes
repository_id_str
spelling Al consultar y hacer uso de este recurso, está aceptando las condiciones de uso establecidas por los autores.http://creativecommons.org/licenses/by-nc-sa/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Pedraza Leal, Juan Manuelvirtual::10800-1Mahecha González, Luis Alejandro95283d18-ac6b-41d8-b841-cd55aa860321600Leidy, ChadRestrepo Restrepo, Silvia2018-09-28T08:37:22Z2018-09-28T08:37:22Z2012http://hdl.handle.net/1992/12168u670973.pdfinstname:Universidad de los Andesreponame:Repositorio Institucional Sénecarepourl:https://repositorio.uniandes.edu.co/The models of evolutionary dynamics are usually based in a fixed background fitness, and when they include cooperation, they also include a fixed degree of cooperation. However, in a biological system each individual is going to have different fitness and cooperate in different degrees due to phenotypic variability, even in isogenic populations. This is an effect of the gene expression noise. Expression noise affects the fitness of an organism when its fitness depends on the advantage of some phenotype that is generated by a gene or group of genes, and an increase in gene noise expression can lead to a decrement of the average total fitness of organisms. We first set up an stochastic program for individual and group selection with fixed background fitness and cooperation level. The results of these stochastic simulations were corroborated and compared to the analytical stochastic model and some approximations for large populations and weak selection. Then we introduced phenotype variability in the case of individual selection and finally we adapted the simulation to a common goods game for group selection with cooperation variability. Our stochastic simulations show that the fixation times are altered if the background fitness is a non-linear function of the gene expression level, as so changes in fixation probability with the variance of the fitness distribution. Including phenotypic variability in Moran processes allows a more realistic approach to the process of individual selection (Natural Selection), and the evolution of cooperation and group selection(Natural selection at a second level). Detailed simulations of competition populations of cooperators and defectors would allow characterization of the importance of phenotypic variability and its utility or impact in an evolutionary process.Magíster en FísicaMaestría108 hojasapplication/pdfenginstname:Universidad de los Andesreponame:Repositorio Institucional SénecaEffects of gene expression noise on phenotype and cooperate-defect fitnessTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesishttp://purl.org/coar/version/c_970fb48d4fbd8a85Texthttp://purl.org/redcol/resource_type/TMMaestría en Ciencias - FísicaFacultad de CienciasDepartamento de FísicaExpresión génica - InvestigacionesFenotipos - InvestigacionesAptitudes físicas - InvestigacionesFísicaPublicationhttps://scholar.google.es/citations?user=x8-YWMsAAAAJvirtual::10800-10000-0002-1802-3337virtual::10800-1https://scienti.minciencias.gov.co/cvlac/visualizador/generarCurriculoCv.do?cod_rh=0000001817virtual::10800-1a4c0056f-ab75-4234-9297-925380d7633avirtual::10800-1a4c0056f-ab75-4234-9297-925380d7633avirtual::10800-1TEXTu670973.pdf.txtu670973.pdf.txtExtracted texttext/plain130020https://repositorio.uniandes.edu.co/bitstreams/6d3fd5bb-abbf-4e82-89f0-944734065fe9/downloadd11220e4c9abafd5e599946e38159a09MD54THUMBNAILu670973.pdf.jpgu670973.pdf.jpgIM Thumbnailimage/jpeg7629https://repositorio.uniandes.edu.co/bitstreams/aad06879-b2b8-4dbf-9699-dbd4ab4a2889/download17c8b1c83c3c4c8a0255bf45760fd0d7MD55ORIGINALu670973.pdfapplication/pdf3163357https://repositorio.uniandes.edu.co/bitstreams/ece266ac-290c-4093-b4b1-d4ec93a223bd/download994c2b601bc6a1b5758ad2effc24480cMD511992/12168oai:repositorio.uniandes.edu.co:1992/121682024-03-13 14:16:39.288http://creativecommons.org/licenses/by-nc-sa/4.0/open.accesshttps://repositorio.uniandes.edu.coRepositorio institucional Sénecaadminrepositorio@uniandes.edu.co
dc.title.es_CO.fl_str_mv Effects of gene expression noise on phenotype and cooperate-defect fitness
title Effects of gene expression noise on phenotype and cooperate-defect fitness
spellingShingle Effects of gene expression noise on phenotype and cooperate-defect fitness
Expresión génica - Investigaciones
Fenotipos - Investigaciones
Aptitudes físicas - Investigaciones
Física
title_short Effects of gene expression noise on phenotype and cooperate-defect fitness
title_full Effects of gene expression noise on phenotype and cooperate-defect fitness
title_fullStr Effects of gene expression noise on phenotype and cooperate-defect fitness
title_full_unstemmed Effects of gene expression noise on phenotype and cooperate-defect fitness
title_sort Effects of gene expression noise on phenotype and cooperate-defect fitness
dc.creator.fl_str_mv Mahecha González, Luis Alejandro
dc.contributor.advisor.none.fl_str_mv Pedraza Leal, Juan Manuel
dc.contributor.author.none.fl_str_mv Mahecha González, Luis Alejandro
dc.contributor.jury.none.fl_str_mv Leidy, Chad
Restrepo Restrepo, Silvia
dc.subject.keyword.es_CO.fl_str_mv Expresión génica - Investigaciones
Fenotipos - Investigaciones
Aptitudes físicas - Investigaciones
topic Expresión génica - Investigaciones
Fenotipos - Investigaciones
Aptitudes físicas - Investigaciones
Física
dc.subject.themes.none.fl_str_mv Física
description The models of evolutionary dynamics are usually based in a fixed background fitness, and when they include cooperation, they also include a fixed degree of cooperation. However, in a biological system each individual is going to have different fitness and cooperate in different degrees due to phenotypic variability, even in isogenic populations. This is an effect of the gene expression noise. Expression noise affects the fitness of an organism when its fitness depends on the advantage of some phenotype that is generated by a gene or group of genes, and an increase in gene noise expression can lead to a decrement of the average total fitness of organisms. We first set up an stochastic program for individual and group selection with fixed background fitness and cooperation level. The results of these stochastic simulations were corroborated and compared to the analytical stochastic model and some approximations for large populations and weak selection. Then we introduced phenotype variability in the case of individual selection and finally we adapted the simulation to a common goods game for group selection with cooperation variability. Our stochastic simulations show that the fixation times are altered if the background fitness is a non-linear function of the gene expression level, as so changes in fixation probability with the variance of the fitness distribution. Including phenotypic variability in Moran processes allows a more realistic approach to the process of individual selection (Natural Selection), and the evolution of cooperation and group selection(Natural selection at a second level). Detailed simulations of competition populations of cooperators and defectors would allow characterization of the importance of phenotypic variability and its utility or impact in an evolutionary process.
publishDate 2012
dc.date.issued.none.fl_str_mv 2012
dc.date.accessioned.none.fl_str_mv 2018-09-28T08:37:22Z
dc.date.available.none.fl_str_mv 2018-09-28T08:37:22Z
dc.type.spa.fl_str_mv Trabajo de grado - Maestría
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/masterThesis
dc.type.content.spa.fl_str_mv Text
dc.type.redcol.spa.fl_str_mv http://purl.org/redcol/resource_type/TM
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/1992/12168
dc.identifier.pdf.none.fl_str_mv u670973.pdf
dc.identifier.instname.spa.fl_str_mv instname:Universidad de los Andes
dc.identifier.reponame.spa.fl_str_mv reponame:Repositorio Institucional Séneca
dc.identifier.repourl.spa.fl_str_mv repourl:https://repositorio.uniandes.edu.co/
url http://hdl.handle.net/1992/12168
identifier_str_mv u670973.pdf
instname:Universidad de los Andes
reponame:Repositorio Institucional Séneca
repourl:https://repositorio.uniandes.edu.co/
dc.language.iso.es_CO.fl_str_mv eng
language eng
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.coar.spa.fl_str_mv http://purl.org/coar/access_right/c_abf2
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.extent.es_CO.fl_str_mv 108 hojas
dc.format.mimetype.es_CO.fl_str_mv application/pdf
dc.publisher.program.es_CO.fl_str_mv Maestría en Ciencias - Física
dc.publisher.faculty.es_CO.fl_str_mv Facultad de Ciencias
dc.publisher.department.es_CO.fl_str_mv Departamento de Física
dc.source.es_CO.fl_str_mv instname:Universidad de los Andes
reponame:Repositorio Institucional Séneca
instname_str Universidad de los Andes
institution Universidad de los Andes
reponame_str Repositorio Institucional Séneca
collection Repositorio Institucional Séneca
bitstream.url.fl_str_mv https://repositorio.uniandes.edu.co/bitstreams/6d3fd5bb-abbf-4e82-89f0-944734065fe9/download
https://repositorio.uniandes.edu.co/bitstreams/aad06879-b2b8-4dbf-9699-dbd4ab4a2889/download
https://repositorio.uniandes.edu.co/bitstreams/ece266ac-290c-4093-b4b1-d4ec93a223bd/download
bitstream.checksum.fl_str_mv d11220e4c9abafd5e599946e38159a09
17c8b1c83c3c4c8a0255bf45760fd0d7
994c2b601bc6a1b5758ad2effc24480c
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Repositorio institucional Séneca
repository.mail.fl_str_mv adminrepositorio@uniandes.edu.co
_version_ 1812133969311825920