Effects of gene expression noise on phenotype and cooperate-defect fitness
The models of evolutionary dynamics are usually based in a fixed background fitness, and when they include cooperation, they also include a fixed degree of cooperation. However, in a biological system each individual is going to have different fitness and cooperate in different degrees due to phenot...
- Autores:
-
Mahecha González, Luis Alejandro
- Tipo de recurso:
- Fecha de publicación:
- 2012
- Institución:
- Universidad de los Andes
- Repositorio:
- Séneca: repositorio Uniandes
- Idioma:
- eng
- OAI Identifier:
- oai:repositorio.uniandes.edu.co:1992/12168
- Acceso en línea:
- http://hdl.handle.net/1992/12168
- Palabra clave:
- Expresión génica - Investigaciones
Fenotipos - Investigaciones
Aptitudes físicas - Investigaciones
Física
- Rights
- openAccess
- License
- http://creativecommons.org/licenses/by-nc-sa/4.0/
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Al consultar y hacer uso de este recurso, está aceptando las condiciones de uso establecidas por los autores.http://creativecommons.org/licenses/by-nc-sa/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Pedraza Leal, Juan Manuelvirtual::10800-1Mahecha González, Luis Alejandro95283d18-ac6b-41d8-b841-cd55aa860321600Leidy, ChadRestrepo Restrepo, Silvia2018-09-28T08:37:22Z2018-09-28T08:37:22Z2012http://hdl.handle.net/1992/12168u670973.pdfinstname:Universidad de los Andesreponame:Repositorio Institucional Sénecarepourl:https://repositorio.uniandes.edu.co/The models of evolutionary dynamics are usually based in a fixed background fitness, and when they include cooperation, they also include a fixed degree of cooperation. However, in a biological system each individual is going to have different fitness and cooperate in different degrees due to phenotypic variability, even in isogenic populations. This is an effect of the gene expression noise. Expression noise affects the fitness of an organism when its fitness depends on the advantage of some phenotype that is generated by a gene or group of genes, and an increase in gene noise expression can lead to a decrement of the average total fitness of organisms. We first set up an stochastic program for individual and group selection with fixed background fitness and cooperation level. The results of these stochastic simulations were corroborated and compared to the analytical stochastic model and some approximations for large populations and weak selection. Then we introduced phenotype variability in the case of individual selection and finally we adapted the simulation to a common goods game for group selection with cooperation variability. Our stochastic simulations show that the fixation times are altered if the background fitness is a non-linear function of the gene expression level, as so changes in fixation probability with the variance of the fitness distribution. Including phenotypic variability in Moran processes allows a more realistic approach to the process of individual selection (Natural Selection), and the evolution of cooperation and group selection(Natural selection at a second level). Detailed simulations of competition populations of cooperators and defectors would allow characterization of the importance of phenotypic variability and its utility or impact in an evolutionary process.Magíster en FísicaMaestría108 hojasapplication/pdfenginstname:Universidad de los Andesreponame:Repositorio Institucional SénecaEffects of gene expression noise on phenotype and cooperate-defect fitnessTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesishttp://purl.org/coar/version/c_970fb48d4fbd8a85Texthttp://purl.org/redcol/resource_type/TMMaestría en Ciencias - FísicaFacultad de CienciasDepartamento de FísicaExpresión génica - InvestigacionesFenotipos - InvestigacionesAptitudes físicas - InvestigacionesFísicaPublicationhttps://scholar.google.es/citations?user=x8-YWMsAAAAJvirtual::10800-10000-0002-1802-3337virtual::10800-1https://scienti.minciencias.gov.co/cvlac/visualizador/generarCurriculoCv.do?cod_rh=0000001817virtual::10800-1a4c0056f-ab75-4234-9297-925380d7633avirtual::10800-1a4c0056f-ab75-4234-9297-925380d7633avirtual::10800-1TEXTu670973.pdf.txtu670973.pdf.txtExtracted texttext/plain130020https://repositorio.uniandes.edu.co/bitstreams/6d3fd5bb-abbf-4e82-89f0-944734065fe9/downloadd11220e4c9abafd5e599946e38159a09MD54THUMBNAILu670973.pdf.jpgu670973.pdf.jpgIM Thumbnailimage/jpeg7629https://repositorio.uniandes.edu.co/bitstreams/aad06879-b2b8-4dbf-9699-dbd4ab4a2889/download17c8b1c83c3c4c8a0255bf45760fd0d7MD55ORIGINALu670973.pdfapplication/pdf3163357https://repositorio.uniandes.edu.co/bitstreams/ece266ac-290c-4093-b4b1-d4ec93a223bd/download994c2b601bc6a1b5758ad2effc24480cMD511992/12168oai:repositorio.uniandes.edu.co:1992/121682024-03-13 14:16:39.288http://creativecommons.org/licenses/by-nc-sa/4.0/open.accesshttps://repositorio.uniandes.edu.coRepositorio institucional Sénecaadminrepositorio@uniandes.edu.co |
dc.title.es_CO.fl_str_mv |
Effects of gene expression noise on phenotype and cooperate-defect fitness |
title |
Effects of gene expression noise on phenotype and cooperate-defect fitness |
spellingShingle |
Effects of gene expression noise on phenotype and cooperate-defect fitness Expresión génica - Investigaciones Fenotipos - Investigaciones Aptitudes físicas - Investigaciones Física |
title_short |
Effects of gene expression noise on phenotype and cooperate-defect fitness |
title_full |
Effects of gene expression noise on phenotype and cooperate-defect fitness |
title_fullStr |
Effects of gene expression noise on phenotype and cooperate-defect fitness |
title_full_unstemmed |
Effects of gene expression noise on phenotype and cooperate-defect fitness |
title_sort |
Effects of gene expression noise on phenotype and cooperate-defect fitness |
dc.creator.fl_str_mv |
Mahecha González, Luis Alejandro |
dc.contributor.advisor.none.fl_str_mv |
Pedraza Leal, Juan Manuel |
dc.contributor.author.none.fl_str_mv |
Mahecha González, Luis Alejandro |
dc.contributor.jury.none.fl_str_mv |
Leidy, Chad Restrepo Restrepo, Silvia |
dc.subject.keyword.es_CO.fl_str_mv |
Expresión génica - Investigaciones Fenotipos - Investigaciones Aptitudes físicas - Investigaciones |
topic |
Expresión génica - Investigaciones Fenotipos - Investigaciones Aptitudes físicas - Investigaciones Física |
dc.subject.themes.none.fl_str_mv |
Física |
description |
The models of evolutionary dynamics are usually based in a fixed background fitness, and when they include cooperation, they also include a fixed degree of cooperation. However, in a biological system each individual is going to have different fitness and cooperate in different degrees due to phenotypic variability, even in isogenic populations. This is an effect of the gene expression noise. Expression noise affects the fitness of an organism when its fitness depends on the advantage of some phenotype that is generated by a gene or group of genes, and an increase in gene noise expression can lead to a decrement of the average total fitness of organisms. We first set up an stochastic program for individual and group selection with fixed background fitness and cooperation level. The results of these stochastic simulations were corroborated and compared to the analytical stochastic model and some approximations for large populations and weak selection. Then we introduced phenotype variability in the case of individual selection and finally we adapted the simulation to a common goods game for group selection with cooperation variability. Our stochastic simulations show that the fixation times are altered if the background fitness is a non-linear function of the gene expression level, as so changes in fixation probability with the variance of the fitness distribution. Including phenotypic variability in Moran processes allows a more realistic approach to the process of individual selection (Natural Selection), and the evolution of cooperation and group selection(Natural selection at a second level). Detailed simulations of competition populations of cooperators and defectors would allow characterization of the importance of phenotypic variability and its utility or impact in an evolutionary process. |
publishDate |
2012 |
dc.date.issued.none.fl_str_mv |
2012 |
dc.date.accessioned.none.fl_str_mv |
2018-09-28T08:37:22Z |
dc.date.available.none.fl_str_mv |
2018-09-28T08:37:22Z |
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Trabajo de grado - Maestría |
dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
dc.type.driver.spa.fl_str_mv |
info:eu-repo/semantics/masterThesis |
dc.type.content.spa.fl_str_mv |
Text |
dc.type.redcol.spa.fl_str_mv |
http://purl.org/redcol/resource_type/TM |
dc.identifier.uri.none.fl_str_mv |
http://hdl.handle.net/1992/12168 |
dc.identifier.pdf.none.fl_str_mv |
u670973.pdf |
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instname:Universidad de los Andes |
dc.identifier.reponame.spa.fl_str_mv |
reponame:Repositorio Institucional Séneca |
dc.identifier.repourl.spa.fl_str_mv |
repourl:https://repositorio.uniandes.edu.co/ |
url |
http://hdl.handle.net/1992/12168 |
identifier_str_mv |
u670973.pdf instname:Universidad de los Andes reponame:Repositorio Institucional Séneca repourl:https://repositorio.uniandes.edu.co/ |
dc.language.iso.es_CO.fl_str_mv |
eng |
language |
eng |
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http://creativecommons.org/licenses/by-nc-sa/4.0/ |
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info:eu-repo/semantics/openAccess |
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http://creativecommons.org/licenses/by-nc-sa/4.0/ http://purl.org/coar/access_right/c_abf2 |
eu_rights_str_mv |
openAccess |
dc.format.extent.es_CO.fl_str_mv |
108 hojas |
dc.format.mimetype.es_CO.fl_str_mv |
application/pdf |
dc.publisher.program.es_CO.fl_str_mv |
Maestría en Ciencias - Física |
dc.publisher.faculty.es_CO.fl_str_mv |
Facultad de Ciencias |
dc.publisher.department.es_CO.fl_str_mv |
Departamento de Física |
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Universidad de los Andes |
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