Metabolic engineering of Escherichia coli for the efficient conversion of glycerol to ethanol and the evaluation of Ethanol and 1,3- Propanediol in some native facultative anaerobes isolates

Cells have been employed as miniaturized chemical plants that produce various chemicals towards our benefits. However, the bio-based processes are generally inefficient due to the limited metabolic capacity of the cell towards the production of a desired product. One technique implemented to analyze...

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Autores:
Ramírez Angulo, Jessica Paola
Tipo de recurso:
Fecha de publicación:
2011
Institución:
Universidad de los Andes
Repositorio:
Séneca: repositorio Uniandes
Idioma:
eng
OAI Identifier:
oai:repositorio.uniandes.edu.co:1992/11478
Acceso en línea:
http://hdl.handle.net/1992/11478
Palabra clave:
Ingeniería metabólica - Investigaciones
Escherichia Coli - Investigaciones
Metabolismo - Investigaciones
Ingeniería
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openAccess
License
http://creativecommons.org/licenses/by-nc-nd/4.0/
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spelling Al consultar y hacer uso de este recurso, está aceptando las condiciones de uso establecidas por los autores.http://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2González Barrios, Andrés Fernando5b081b72-bd70-4205-9c69-82d71c44ddd2600Ramírez Angulo, Jessica Paola5a7f7ee7-6d3d-4651-8f2b-41fb5b23add3600Sierra Ramírez, Rocío2018-09-28T07:59:16Z2018-09-28T07:59:16Z2011http://hdl.handle.net/1992/11478u471628.pdfinstname:Universidad de los Andesreponame:Repositorio Institucional Sénecarepourl:https://repositorio.uniandes.edu.co/Cells have been employed as miniaturized chemical plants that produce various chemicals towards our benefits. However, the bio-based processes are generally inefficient due to the limited metabolic capacity of the cell towards the production of a desired product. One technique implemented to analyze microbial metabolic networks in metabolic engineering is known as Flux Balance Analysis (FBA). On the other hand, since glycerol has become an inexpensive abundant carbon source due to its generation as a by-product of biodiesel production, the developed processes to convert crude glycerol into higher-value products is imperative. In this work, we coupled to our experimental section a bi-level optimization platform based on genetic algorithms which determined the place where the gene over expressions should occur, finding five over expressions as those showing better performance of ethanol production. On another hand, usually, FBA is employed to study the metabolic flux at a particular steady state of the system. Recently, it has been noticed that the dynamics of these metabolic networks have to be studied. As a result, FBA has been extended in order to account for the network dynamics. Herein, an optimization framework was coupled to our experimental section, finding that even when the results were different from a quantitative perspective, they both indicated that an overexpression and/or repression of frdABDC and pflB display the highest ethanol concentration.Magíster en Ingeniería QuímicaMaestría91 hojasapplication/pdfengUniandesMaestría en Ingeniería QuímicaFacultad de IngenieríaDepartamento de Ingeniería Químicainstname:Universidad de los Andesreponame:Repositorio Institucional SénecaMetabolic engineering of Escherichia coli for the efficient conversion of glycerol to ethanol and the evaluation of Ethanol and 1,3- Propanediol in some native facultative anaerobes isolatesTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesishttp://purl.org/coar/version/c_970fb48d4fbd8a85Texthttp://purl.org/redcol/resource_type/TMIngeniería metabólica - InvestigacionesEscherichia Coli - InvestigacionesMetabolismo - InvestigacionesIngenieríaPublicationTHUMBNAILu471628.pdf.jpgu471628.pdf.jpgIM Thumbnailimage/jpeg5322https://repositorio.uniandes.edu.co/bitstreams/e183ed65-bca8-4aff-ab3d-957469ace19b/download945fb50127b00989368de9b20ffd2963MD55TEXTu471628.pdf.txtu471628.pdf.txtExtracted texttext/plain104897https://repositorio.uniandes.edu.co/bitstreams/c145654e-3739-466c-8221-7d21d78b37bf/download9ec2ab60381907fe1e2e3cbe234f4c31MD54ORIGINALu471628.pdfapplication/pdf705785https://repositorio.uniandes.edu.co/bitstreams/5e42e721-bb85-4346-914e-4ad01dff11f7/download05394fb79f331d19ded87dff9ea68970MD511992/11478oai:repositorio.uniandes.edu.co:1992/114782023-10-10 18:06:30.464http://creativecommons.org/licenses/by-nc-nd/4.0/open.accesshttps://repositorio.uniandes.edu.coRepositorio institucional Sénecaadminrepositorio@uniandes.edu.co
dc.title.es_CO.fl_str_mv Metabolic engineering of Escherichia coli for the efficient conversion of glycerol to ethanol and the evaluation of Ethanol and 1,3- Propanediol in some native facultative anaerobes isolates
title Metabolic engineering of Escherichia coli for the efficient conversion of glycerol to ethanol and the evaluation of Ethanol and 1,3- Propanediol in some native facultative anaerobes isolates
spellingShingle Metabolic engineering of Escherichia coli for the efficient conversion of glycerol to ethanol and the evaluation of Ethanol and 1,3- Propanediol in some native facultative anaerobes isolates
Ingeniería metabólica - Investigaciones
Escherichia Coli - Investigaciones
Metabolismo - Investigaciones
Ingeniería
title_short Metabolic engineering of Escherichia coli for the efficient conversion of glycerol to ethanol and the evaluation of Ethanol and 1,3- Propanediol in some native facultative anaerobes isolates
title_full Metabolic engineering of Escherichia coli for the efficient conversion of glycerol to ethanol and the evaluation of Ethanol and 1,3- Propanediol in some native facultative anaerobes isolates
title_fullStr Metabolic engineering of Escherichia coli for the efficient conversion of glycerol to ethanol and the evaluation of Ethanol and 1,3- Propanediol in some native facultative anaerobes isolates
title_full_unstemmed Metabolic engineering of Escherichia coli for the efficient conversion of glycerol to ethanol and the evaluation of Ethanol and 1,3- Propanediol in some native facultative anaerobes isolates
title_sort Metabolic engineering of Escherichia coli for the efficient conversion of glycerol to ethanol and the evaluation of Ethanol and 1,3- Propanediol in some native facultative anaerobes isolates
dc.creator.fl_str_mv Ramírez Angulo, Jessica Paola
dc.contributor.advisor.none.fl_str_mv González Barrios, Andrés Fernando
dc.contributor.author.none.fl_str_mv Ramírez Angulo, Jessica Paola
dc.contributor.jury.none.fl_str_mv Sierra Ramírez, Rocío
dc.subject.keyword.es_CO.fl_str_mv Ingeniería metabólica - Investigaciones
Escherichia Coli - Investigaciones
Metabolismo - Investigaciones
topic Ingeniería metabólica - Investigaciones
Escherichia Coli - Investigaciones
Metabolismo - Investigaciones
Ingeniería
dc.subject.themes.none.fl_str_mv Ingeniería
description Cells have been employed as miniaturized chemical plants that produce various chemicals towards our benefits. However, the bio-based processes are generally inefficient due to the limited metabolic capacity of the cell towards the production of a desired product. One technique implemented to analyze microbial metabolic networks in metabolic engineering is known as Flux Balance Analysis (FBA). On the other hand, since glycerol has become an inexpensive abundant carbon source due to its generation as a by-product of biodiesel production, the developed processes to convert crude glycerol into higher-value products is imperative. In this work, we coupled to our experimental section a bi-level optimization platform based on genetic algorithms which determined the place where the gene over expressions should occur, finding five over expressions as those showing better performance of ethanol production. On another hand, usually, FBA is employed to study the metabolic flux at a particular steady state of the system. Recently, it has been noticed that the dynamics of these metabolic networks have to be studied. As a result, FBA has been extended in order to account for the network dynamics. Herein, an optimization framework was coupled to our experimental section, finding that even when the results were different from a quantitative perspective, they both indicated that an overexpression and/or repression of frdABDC and pflB display the highest ethanol concentration.
publishDate 2011
dc.date.issued.none.fl_str_mv 2011
dc.date.accessioned.none.fl_str_mv 2018-09-28T07:59:16Z
dc.date.available.none.fl_str_mv 2018-09-28T07:59:16Z
dc.type.spa.fl_str_mv Trabajo de grado - Maestría
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dc.identifier.pdf.none.fl_str_mv u471628.pdf
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identifier_str_mv u471628.pdf
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eu_rights_str_mv openAccess
dc.format.extent.es_CO.fl_str_mv 91 hojas
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dc.publisher.es_CO.fl_str_mv Uniandes
dc.publisher.program.es_CO.fl_str_mv Maestría en Ingeniería Química
dc.publisher.faculty.es_CO.fl_str_mv Facultad de Ingeniería
dc.publisher.department.es_CO.fl_str_mv Departamento de Ingeniería Química
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