Cost calculation of an altruistic act for the plasmids-in-bacteria system through probabilistic simulations

Multilevel selection is a mechanism that enables natural selection to establish cooperation when competition happens at various levels of the population. Such mechanism can be observed in the system of plasmids in bacteria. Therefore, for this research the cost of altruism will be calculated under t...

Full description

Autores:
Ramírez Ramírez, María Alejandra
Tipo de recurso:
Trabajo de grado de pregrado
Fecha de publicación:
2020
Institución:
Universidad de los Andes
Repositorio:
Séneca: repositorio Uniandes
Idioma:
eng
OAI Identifier:
oai:repositorio.uniandes.edu.co:1992/49156
Acceso en línea:
http://hdl.handle.net/1992/49156
Palabra clave:
Plásmidos bacterianos
Altruismo
Selección multinivel
Cooperación (Evolución)
Física
Rights
openAccess
License
http://creativecommons.org/licenses/by-nc-sa/4.0/
id UNIANDES2_7995578f7e2cd578ffade4c171d75183
oai_identifier_str oai:repositorio.uniandes.edu.co:1992/49156
network_acronym_str UNIANDES2
network_name_str Séneca: repositorio Uniandes
repository_id_str
dc.title.es_CO.fl_str_mv Cost calculation of an altruistic act for the plasmids-in-bacteria system through probabilistic simulations
title Cost calculation of an altruistic act for the plasmids-in-bacteria system through probabilistic simulations
spellingShingle Cost calculation of an altruistic act for the plasmids-in-bacteria system through probabilistic simulations
Plásmidos bacterianos
Altruismo
Selección multinivel
Cooperación (Evolución)
Física
title_short Cost calculation of an altruistic act for the plasmids-in-bacteria system through probabilistic simulations
title_full Cost calculation of an altruistic act for the plasmids-in-bacteria system through probabilistic simulations
title_fullStr Cost calculation of an altruistic act for the plasmids-in-bacteria system through probabilistic simulations
title_full_unstemmed Cost calculation of an altruistic act for the plasmids-in-bacteria system through probabilistic simulations
title_sort Cost calculation of an altruistic act for the plasmids-in-bacteria system through probabilistic simulations
dc.creator.fl_str_mv Ramírez Ramírez, María Alejandra
dc.contributor.advisor.none.fl_str_mv Pedraza Leal, Juan Manuel
dc.contributor.author.none.fl_str_mv Ramírez Ramírez, María Alejandra
dc.contributor.jury.none.fl_str_mv Forero Shelton, Antonio Manu
dc.subject.armarc.es_CO.fl_str_mv Plásmidos bacterianos
Altruismo
Selección multinivel
Cooperación (Evolución)
topic Plásmidos bacterianos
Altruismo
Selección multinivel
Cooperación (Evolución)
Física
dc.subject.themes.none.fl_str_mv Física
description Multilevel selection is a mechanism that enables natural selection to establish cooperation when competition happens at various levels of the population. Such mechanism can be observed in the system of plasmids in bacteria. Therefore, for this research the cost of altruism will be calculated under the multilevel selection framework for this particular system. In general terms, cooperation can be evidenced in this system when a given plasmid type adopts a relatively low replication rate compared to its contenders. Such strategy inherently translates into a disadvantage at an individual level. However, it represents a benefit at the collective level, since a lower metabolic burden is exerted on the bacterial host. Consequently, to reduce the replication rate can be interpreted as an altruistic act. In particular, for this project an approach based on probabilistic simulations is used to calculate the cost of this act, because it allows to analyze the competition happening between plasmids at an intracellular level. As part of the results, it was found that the cost of an altruistic act depends on the degree of selfishness of the direct contender. Also, it was discovered that the cost paid by a selfish type is negative, which allows for the cost to be interpreted as a benefit in this case. Additionally, a phenomenological expression for the cost of an altruistic act was derived from the results obtained. Such expression shows that the cost is equal to the logarithmic difference between the repression coefficients (or steady-states) of the competing plasmids, multiplied by a constant that is directly proportional to the Hill coefficient. Therefore, this research provides a powerful tool to obtain the cost of an altruistic act through information that can be readily measured on the biological system
publishDate 2020
dc.date.issued.none.fl_str_mv 2020
dc.date.accessioned.none.fl_str_mv 2021-02-18T12:42:59Z
dc.date.available.none.fl_str_mv 2021-02-18T12:42:59Z
dc.type.spa.fl_str_mv Trabajo de grado - Pregrado
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/bachelorThesis
dc.type.coar.spa.fl_str_mv http://purl.org/coar/resource_type/c_7a1f
dc.type.content.spa.fl_str_mv Text
dc.type.redcol.spa.fl_str_mv http://purl.org/redcol/resource_type/TP
format http://purl.org/coar/resource_type/c_7a1f
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/1992/49156
dc.identifier.pdf.none.fl_str_mv u833901.pdf
dc.identifier.instname.spa.fl_str_mv instname:Universidad de los Andes
dc.identifier.reponame.spa.fl_str_mv reponame:Repositorio Institucional Séneca
dc.identifier.repourl.spa.fl_str_mv repourl:https://repositorio.uniandes.edu.co/
url http://hdl.handle.net/1992/49156
identifier_str_mv u833901.pdf
instname:Universidad de los Andes
reponame:Repositorio Institucional Séneca
repourl:https://repositorio.uniandes.edu.co/
dc.language.iso.es_CO.fl_str_mv eng
language eng
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.coar.spa.fl_str_mv http://purl.org/coar/access_right/c_abf2
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.extent.es_CO.fl_str_mv 97 hojas
dc.format.mimetype.es_CO.fl_str_mv application/pdf
dc.publisher.es_CO.fl_str_mv Universidad de los Andes
dc.publisher.program.es_CO.fl_str_mv Física
dc.publisher.faculty.es_CO.fl_str_mv Facultad de Ciencias
dc.publisher.department.es_CO.fl_str_mv Departamento de Física
dc.source.es_CO.fl_str_mv instname:Universidad de los Andes
reponame:Repositorio Institucional Séneca
instname_str Universidad de los Andes
institution Universidad de los Andes
reponame_str Repositorio Institucional Séneca
collection Repositorio Institucional Séneca
bitstream.url.fl_str_mv https://repositorio.uniandes.edu.co/bitstreams/32a1d1fb-5317-40c0-9696-42d55212d87e/download
https://repositorio.uniandes.edu.co/bitstreams/a81b45cc-f298-4e85-985a-1b216e26412d/download
https://repositorio.uniandes.edu.co/bitstreams/52717688-9649-4270-aced-f49c560be827/download
bitstream.checksum.fl_str_mv 96902d255b22d672d10f16487c4dfc52
638d5a2988b8b044e4f924382a6240ed
709183340fac1c54cbc9785f5fd5036c
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Repositorio institucional Séneca
repository.mail.fl_str_mv adminrepositorio@uniandes.edu.co
_version_ 1812134042143817728
spelling Al consultar y hacer uso de este recurso, está aceptando las condiciones de uso establecidas por los autores.http://creativecommons.org/licenses/by-nc-sa/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Pedraza Leal, Juan Manuelvirtual::15258-1Ramírez Ramírez, María Alejandraac1ca718-f3be-45ab-8669-af6bafc2d4d3500Forero Shelton, Antonio Manu2021-02-18T12:42:59Z2021-02-18T12:42:59Z2020http://hdl.handle.net/1992/49156u833901.pdfinstname:Universidad de los Andesreponame:Repositorio Institucional Sénecarepourl:https://repositorio.uniandes.edu.co/Multilevel selection is a mechanism that enables natural selection to establish cooperation when competition happens at various levels of the population. Such mechanism can be observed in the system of plasmids in bacteria. Therefore, for this research the cost of altruism will be calculated under the multilevel selection framework for this particular system. In general terms, cooperation can be evidenced in this system when a given plasmid type adopts a relatively low replication rate compared to its contenders. Such strategy inherently translates into a disadvantage at an individual level. However, it represents a benefit at the collective level, since a lower metabolic burden is exerted on the bacterial host. Consequently, to reduce the replication rate can be interpreted as an altruistic act. In particular, for this project an approach based on probabilistic simulations is used to calculate the cost of this act, because it allows to analyze the competition happening between plasmids at an intracellular level. As part of the results, it was found that the cost of an altruistic act depends on the degree of selfishness of the direct contender. Also, it was discovered that the cost paid by a selfish type is negative, which allows for the cost to be interpreted as a benefit in this case. Additionally, a phenomenological expression for the cost of an altruistic act was derived from the results obtained. Such expression shows that the cost is equal to the logarithmic difference between the repression coefficients (or steady-states) of the competing plasmids, multiplied by a constant that is directly proportional to the Hill coefficient. Therefore, this research provides a powerful tool to obtain the cost of an altruistic act through information that can be readily measured on the biological system"El mecanismo conocido como selección multinivel permite el surgimiento de estrategias altruistas, en la naturaleza, cuando existe competencia en varios niveles de la población. Tal mecanismo se puede observar en el sistema de plásmidos en bacterias. Por lo tanto, para esta investigación, el costo de ser altruista se calculará bajo el marco de selección multinivel para este sistema en particular. En términos generales, la cooperación se puede evidenciar en este sistema cuando un tipo de plásmido adopta una tasa de replicación relativamente baja en comparación con sus contendientes. Esta estrategia se traduce en una desventaja a nivel individual. Sin embargo, representa un beneficio a nivel colectivo, ya que se ejerce una menor carga metabólica sobre el huésped bacteriano. En consecuencia, reducir la tasa de replicación puede interpretarse como un acto altruista. En particular, para esta investigación se utiliza un enfoque basado en simulaciones probabilísticas para calcular el costo de este acto, ya que permite analizar la competencia que ocurre entre plásmidos a nivel intracelular. Como parte de los resultados, se encontró que el costo de un acto altruista depende del grado de egoísmo del contendiente directo. Asimismo, se descubrió que el costo pagado por plásmidos tipo egoísta es negativo, lo que permite interpretar el costo, en este caso, como un beneficio. Adicionalmente, con base en los resultados obtenidos se derivó una expresión fenomenológica del costo de un acto altruista. Tal expresión muestra que el costo es igual a la diferencia logarítmica entre los coeficientes de represión (o estados estacionarios) de los plásmidos en competencia, multiplicada por una constante que es directamente proporcional al coeficiente de Hill. Por lo tanto, esta investigación proporciona una poderosa herramienta para obtener el costo de un acto altruista a través de información que se puede medir fácilmente en el sistema biológico."--Tomado del Formato de Documento de GradoFísicoPregrado97 hojasapplication/pdfengUniversidad de los AndesFísicaFacultad de CienciasDepartamento de Físicainstname:Universidad de los Andesreponame:Repositorio Institucional SénecaCost calculation of an altruistic act for the plasmids-in-bacteria system through probabilistic simulationsTrabajo de grado - Pregradoinfo:eu-repo/semantics/bachelorThesishttp://purl.org/coar/resource_type/c_7a1fhttp://purl.org/coar/version/c_970fb48d4fbd8a85Texthttp://purl.org/redcol/resource_type/TPPlásmidos bacterianosAltruismoSelección multinivelCooperación (Evolución)FísicaPublicationhttps://scholar.google.es/citations?user=x8-YWMsAAAAJvirtual::15258-10000-0002-1802-3337virtual::15258-1https://scienti.minciencias.gov.co/cvlac/visualizador/generarCurriculoCv.do?cod_rh=0000001817virtual::15258-1a4c0056f-ab75-4234-9297-925380d7633avirtual::15258-1a4c0056f-ab75-4234-9297-925380d7633avirtual::15258-1ORIGINALu833901.pdfapplication/pdf5738534https://repositorio.uniandes.edu.co/bitstreams/32a1d1fb-5317-40c0-9696-42d55212d87e/download96902d255b22d672d10f16487c4dfc52MD51THUMBNAILu833901.pdf.jpgu833901.pdf.jpgIM Thumbnailimage/jpeg8280https://repositorio.uniandes.edu.co/bitstreams/a81b45cc-f298-4e85-985a-1b216e26412d/download638d5a2988b8b044e4f924382a6240edMD55TEXTu833901.pdf.txtu833901.pdf.txtExtracted texttext/plain221797https://repositorio.uniandes.edu.co/bitstreams/52717688-9649-4270-aced-f49c560be827/download709183340fac1c54cbc9785f5fd5036cMD541992/49156oai:repositorio.uniandes.edu.co:1992/491562024-03-13 15:24:47.915http://creativecommons.org/licenses/by-nc-sa/4.0/open.accesshttps://repositorio.uniandes.edu.coRepositorio institucional Sénecaadminrepositorio@uniandes.edu.co