Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity

Phytophthora betacei is an oomycete plant pathogen closely related to Phytophthora infestans. It infects tree tomato (Solanum betaceum) in northern South America, but is, under natural conditions, unable to infect potatoes or tomatoes, the main hosts of its sister species P. infestans. We characteri...

Full description

Autores:
Rojas Estevez, Cindy Paola
Tipo de recurso:
Fecha de publicación:
2021
Institución:
Universidad de los Andes
Repositorio:
Séneca: repositorio Uniandes
Idioma:
eng
OAI Identifier:
oai:repositorio.uniandes.edu.co:1992/51679
Acceso en línea:
http://hdl.handle.net/1992/51679
Palabra clave:
Oomicetes
Phytophthora
Parásitos en las plantas
Plantas parásitas
Patología vegetal
Genómica comparativa
Biología computacional
Relaciones planta-microbio
Biología
Rights
openAccess
License
http://creativecommons.org/licenses/by-nc-sa/4.0/
id UNIANDES2_6d77a133de3d39c74e94897be77cfd00
oai_identifier_str oai:repositorio.uniandes.edu.co:1992/51679
network_acronym_str UNIANDES2
network_name_str Séneca: repositorio Uniandes
repository_id_str
dc.title.spa.fl_str_mv Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity
title Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity
spellingShingle Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity
Oomicetes
Phytophthora
Parásitos en las plantas
Plantas parásitas
Patología vegetal
Genómica comparativa
Biología computacional
Relaciones planta-microbio
Biología
title_short Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity
title_full Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity
title_fullStr Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity
title_full_unstemmed Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity
title_sort Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity
dc.creator.fl_str_mv Rojas Estevez, Cindy Paola
dc.contributor.advisor.none.fl_str_mv Restrepo Restrepo, Silvia
dc.contributor.author.none.fl_str_mv Rojas Estevez, Cindy Paola
dc.contributor.jury.none.fl_str_mv Duitama Castellanos, Jorge Alexander
López Carrascal, Camilo Ernesto
dc.subject.armarc.none.fl_str_mv Oomicetes
Phytophthora
Parásitos en las plantas
Plantas parásitas
Patología vegetal
Genómica comparativa
Biología computacional
Relaciones planta-microbio
topic Oomicetes
Phytophthora
Parásitos en las plantas
Plantas parásitas
Patología vegetal
Genómica comparativa
Biología computacional
Relaciones planta-microbio
Biología
dc.subject.themes.none.fl_str_mv Biología
description Phytophthora betacei is an oomycete plant pathogen closely related to Phytophthora infestans. It infects tree tomato (Solanum betaceum) in northern South America, but is, under natural conditions, unable to infect potatoes or tomatoes, the main hosts of its sister species P. infestans. We characterized, and compared the effector repertoires of P. betacei and other Phytophthora species. To this end, we used in silico approaches to predict and describe the repertoire of secreted proteins in Phytophthora species and determine unique and core effectors. P. betacei has the largest proteome and secretome of all Phytophthora species evaluated. We identified between 450 and 1933 candidate effector genes in P. ramorum, P. sojae, P. cactorum, P. parasitica, P. palmivora, P. infestans, and P. betacei genomes. The P. betacei predicted secretome contains 5653 proteins, 1126 of which are apoplastic effectors and 807cytoplasmic effectors.
publishDate 2021
dc.date.accessioned.none.fl_str_mv 2021-08-10T18:38:17Z
dc.date.available.none.fl_str_mv 2021-08-10T18:38:17Z
dc.date.issued.none.fl_str_mv 2021
dc.type.spa.fl_str_mv Trabajo de grado - Maestría
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/masterThesis
dc.type.content.spa.fl_str_mv Text
dc.type.redcol.spa.fl_str_mv http://purl.org/redcol/resource_type/TM
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/1992/51679
dc.identifier.pdf.none.fl_str_mv 22750.pdf
dc.identifier.instname.spa.fl_str_mv instname:Universidad de los Andes
dc.identifier.reponame.spa.fl_str_mv reponame:Repositorio Institucional Séneca
dc.identifier.repourl.spa.fl_str_mv repourl:https://repositorio.uniandes.edu.co/
url http://hdl.handle.net/1992/51679
identifier_str_mv 22750.pdf
instname:Universidad de los Andes
reponame:Repositorio Institucional Séneca
repourl:https://repositorio.uniandes.edu.co/
dc.language.iso.none.fl_str_mv eng
language eng
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.coar.spa.fl_str_mv http://purl.org/coar/access_right/c_abf2
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.extent.none.fl_str_mv 30 hojas
dc.format.mimetype.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad de los Andes
dc.publisher.program.none.fl_str_mv Maestría en Biología Computacional
dc.publisher.faculty.none.fl_str_mv Facultad de Ciencias
dc.publisher.department.none.fl_str_mv Departamento de Ciencias Biológicas
publisher.none.fl_str_mv Universidad de los Andes
institution Universidad de los Andes
bitstream.url.fl_str_mv https://repositorio.uniandes.edu.co/bitstreams/39f4a4ee-d484-4f8e-bdaf-d19654ccb2e3/download
https://repositorio.uniandes.edu.co/bitstreams/f3dc47f1-b440-4c1a-a425-d76fbfe31a59/download
https://repositorio.uniandes.edu.co/bitstreams/a099c4af-f203-4b56-ae62-ff65e8ffad0e/download
bitstream.checksum.fl_str_mv 2398487976779d3e2c70033be4e78a3d
bf9a4b46eb4a4501b0f3ee818ae220bd
c4dc7e5749569641c005af91a977e069
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Repositorio institucional Séneca
repository.mail.fl_str_mv adminrepositorio@uniandes.edu.co
_version_ 1812133875475808256
spelling Al consultar y hacer uso de este recurso, está aceptando las condiciones de uso establecidas por los autores.http://creativecommons.org/licenses/by-nc-sa/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Restrepo Restrepo, Silviavirtual::4958-1Rojas Estevez, Cindy Paolae62e0504-fcc5-4309-b712-2b6ab1121529500Duitama Castellanos, Jorge AlexanderLópez Carrascal, Camilo Ernesto2021-08-10T18:38:17Z2021-08-10T18:38:17Z2021http://hdl.handle.net/1992/5167922750.pdfinstname:Universidad de los Andesreponame:Repositorio Institucional Sénecarepourl:https://repositorio.uniandes.edu.co/Phytophthora betacei is an oomycete plant pathogen closely related to Phytophthora infestans. It infects tree tomato (Solanum betaceum) in northern South America, but is, under natural conditions, unable to infect potatoes or tomatoes, the main hosts of its sister species P. infestans. We characterized, and compared the effector repertoires of P. betacei and other Phytophthora species. To this end, we used in silico approaches to predict and describe the repertoire of secreted proteins in Phytophthora species and determine unique and core effectors. P. betacei has the largest proteome and secretome of all Phytophthora species evaluated. We identified between 450 and 1933 candidate effector genes in P. ramorum, P. sojae, P. cactorum, P. parasitica, P. palmivora, P. infestans, and P. betacei genomes. The P. betacei predicted secretome contains 5653 proteins, 1126 of which are apoplastic effectors and 807cytoplasmic effectors.Phytophthora betacei es un patógeno vegetal oomiceto estrechamente relacionado con Phytophthora infestans. Infecta el tomate de árbol (Solanum betaceum) en el norte de Sudamérica, pero, en condiciones naturales, no puede infectar patatas o tomates, los principales hospedadores de su especie hermana P. infestans. Caracterizamos y comparamos los repertorios efectores de P. betacei y otras especies de Phytophthora. Con este fin, utilizamos enfoques in silico para predecir y describir el repertorio de proteínas secretadas en especies de Phytophthora y determinar efectores únicos y centrales. P. betacei tiene el proteoma y secretoma más grandes de todas las especies de Phytophthora evaluadas. Identificamos entre 450 y 1933 genes efectores candidatos en los genomas de P. ramorum, P. sojae, P. cactorum, P. parasitica, P. palmivora, P. infestans y P. betacei. El secretoma predicho de P. betacei contiene 5653 proteínas, 1126 de las cuales son efectores apoplásicos y 807 efectores citoplásmicos.Magíster en Biología ComputacionalMaestría30 hojasapplication/pdfengUniversidad de los AndesMaestría en Biología ComputacionalFacultad de CienciasDepartamento de Ciencias BiológicasEffector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificityTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesishttp://purl.org/coar/version/c_970fb48d4fbd8a85Texthttp://purl.org/redcol/resource_type/TMOomicetesPhytophthoraParásitos en las plantasPlantas parásitasPatología vegetalGenómica comparativaBiología computacionalRelaciones planta-microbioBiología201525120Publicationhttps://scholar.google.es/citations?user=7_dVIeAAAAAJvirtual::4958-10000-0001-9016-1040virtual::4958-1https://scienti.minciencias.gov.co/cvlac/visualizador/generarCurriculoCv.do?cod_rh=0000468800virtual::4958-1d7d594d1-aae9-471e-be1d-fc6bbcabef5cvirtual::4958-1d7d594d1-aae9-471e-be1d-fc6bbcabef5cvirtual::4958-1ORIGINAL22750.pdfapplication/pdf7052394https://repositorio.uniandes.edu.co/bitstreams/39f4a4ee-d484-4f8e-bdaf-d19654ccb2e3/download2398487976779d3e2c70033be4e78a3dMD51THUMBNAIL22750.pdf.jpg22750.pdf.jpgIM Thumbnailimage/jpeg10098https://repositorio.uniandes.edu.co/bitstreams/f3dc47f1-b440-4c1a-a425-d76fbfe31a59/downloadbf9a4b46eb4a4501b0f3ee818ae220bdMD55TEXT22750.pdf.txt22750.pdf.txtExtracted texttext/plain60260https://repositorio.uniandes.edu.co/bitstreams/a099c4af-f203-4b56-ae62-ff65e8ffad0e/downloadc4dc7e5749569641c005af91a977e069MD541992/51679oai:repositorio.uniandes.edu.co:1992/516792024-03-13 12:49:03.538http://creativecommons.org/licenses/by-nc-sa/4.0/open.accesshttps://repositorio.uniandes.edu.coRepositorio institucional Sénecaadminrepositorio@uniandes.edu.co