Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity
Phytophthora betacei is an oomycete plant pathogen closely related to Phytophthora infestans. It infects tree tomato (Solanum betaceum) in northern South America, but is, under natural conditions, unable to infect potatoes or tomatoes, the main hosts of its sister species P. infestans. We characteri...
- Autores:
-
Rojas Estevez, Cindy Paola
- Tipo de recurso:
- Fecha de publicación:
- 2021
- Institución:
- Universidad de los Andes
- Repositorio:
- Séneca: repositorio Uniandes
- Idioma:
- eng
- OAI Identifier:
- oai:repositorio.uniandes.edu.co:1992/51679
- Acceso en línea:
- http://hdl.handle.net/1992/51679
- Palabra clave:
- Oomicetes
Phytophthora
Parásitos en las plantas
Plantas parásitas
Patología vegetal
Genómica comparativa
Biología computacional
Relaciones planta-microbio
Biología
- Rights
- openAccess
- License
- http://creativecommons.org/licenses/by-nc-sa/4.0/
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| dc.title.spa.fl_str_mv |
Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity |
| title |
Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity |
| spellingShingle |
Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity Oomicetes Phytophthora Parásitos en las plantas Plantas parásitas Patología vegetal Genómica comparativa Biología computacional Relaciones planta-microbio Biología |
| title_short |
Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity |
| title_full |
Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity |
| title_fullStr |
Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity |
| title_full_unstemmed |
Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity |
| title_sort |
Effector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificity |
| dc.creator.fl_str_mv |
Rojas Estevez, Cindy Paola |
| dc.contributor.advisor.none.fl_str_mv |
Restrepo Restrepo, Silvia |
| dc.contributor.author.none.fl_str_mv |
Rojas Estevez, Cindy Paola |
| dc.contributor.jury.none.fl_str_mv |
Duitama Castellanos, Jorge Alexander López Carrascal, Camilo Ernesto |
| dc.subject.armarc.none.fl_str_mv |
Oomicetes Phytophthora Parásitos en las plantas Plantas parásitas Patología vegetal Genómica comparativa Biología computacional Relaciones planta-microbio |
| topic |
Oomicetes Phytophthora Parásitos en las plantas Plantas parásitas Patología vegetal Genómica comparativa Biología computacional Relaciones planta-microbio Biología |
| dc.subject.themes.none.fl_str_mv |
Biología |
| description |
Phytophthora betacei is an oomycete plant pathogen closely related to Phytophthora infestans. It infects tree tomato (Solanum betaceum) in northern South America, but is, under natural conditions, unable to infect potatoes or tomatoes, the main hosts of its sister species P. infestans. We characterized, and compared the effector repertoires of P. betacei and other Phytophthora species. To this end, we used in silico approaches to predict and describe the repertoire of secreted proteins in Phytophthora species and determine unique and core effectors. P. betacei has the largest proteome and secretome of all Phytophthora species evaluated. We identified between 450 and 1933 candidate effector genes in P. ramorum, P. sojae, P. cactorum, P. parasitica, P. palmivora, P. infestans, and P. betacei genomes. The P. betacei predicted secretome contains 5653 proteins, 1126 of which are apoplastic effectors and 807cytoplasmic effectors. |
| publishDate |
2021 |
| dc.date.accessioned.none.fl_str_mv |
2021-08-10T18:38:17Z |
| dc.date.available.none.fl_str_mv |
2021-08-10T18:38:17Z |
| dc.date.issued.none.fl_str_mv |
2021 |
| dc.type.spa.fl_str_mv |
Trabajo de grado - Maestría |
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http://purl.org/coar/version/c_970fb48d4fbd8a85 |
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info:eu-repo/semantics/masterThesis |
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Text |
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http://purl.org/redcol/resource_type/TM |
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http://hdl.handle.net/1992/51679 |
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22750.pdf |
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instname:Universidad de los Andes |
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reponame:Repositorio Institucional Séneca |
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repourl:https://repositorio.uniandes.edu.co/ |
| url |
http://hdl.handle.net/1992/51679 |
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22750.pdf instname:Universidad de los Andes reponame:Repositorio Institucional Séneca repourl:https://repositorio.uniandes.edu.co/ |
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eng |
| language |
eng |
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http://creativecommons.org/licenses/by-nc-sa/4.0/ |
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info:eu-repo/semantics/openAccess |
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http://purl.org/coar/access_right/c_abf2 |
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http://creativecommons.org/licenses/by-nc-sa/4.0/ http://purl.org/coar/access_right/c_abf2 |
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openAccess |
| dc.format.extent.none.fl_str_mv |
30 hojas |
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application/pdf |
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Universidad de los Andes |
| dc.publisher.program.none.fl_str_mv |
Maestría en Biología Computacional |
| dc.publisher.faculty.none.fl_str_mv |
Facultad de Ciencias |
| dc.publisher.department.none.fl_str_mv |
Departamento de Ciencias Biológicas |
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Universidad de los Andes |
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Universidad de los Andes |
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Al consultar y hacer uso de este recurso, está aceptando las condiciones de uso establecidas por los autores.http://creativecommons.org/licenses/by-nc-sa/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Restrepo Restrepo, Silviavirtual::4958-1Rojas Estevez, Cindy Paolae62e0504-fcc5-4309-b712-2b6ab1121529500Duitama Castellanos, Jorge AlexanderLópez Carrascal, Camilo Ernesto2021-08-10T18:38:17Z2021-08-10T18:38:17Z2021http://hdl.handle.net/1992/5167922750.pdfinstname:Universidad de los Andesreponame:Repositorio Institucional Sénecarepourl:https://repositorio.uniandes.edu.co/Phytophthora betacei is an oomycete plant pathogen closely related to Phytophthora infestans. It infects tree tomato (Solanum betaceum) in northern South America, but is, under natural conditions, unable to infect potatoes or tomatoes, the main hosts of its sister species P. infestans. We characterized, and compared the effector repertoires of P. betacei and other Phytophthora species. To this end, we used in silico approaches to predict and describe the repertoire of secreted proteins in Phytophthora species and determine unique and core effectors. P. betacei has the largest proteome and secretome of all Phytophthora species evaluated. We identified between 450 and 1933 candidate effector genes in P. ramorum, P. sojae, P. cactorum, P. parasitica, P. palmivora, P. infestans, and P. betacei genomes. The P. betacei predicted secretome contains 5653 proteins, 1126 of which are apoplastic effectors and 807cytoplasmic effectors.Phytophthora betacei es un patógeno vegetal oomiceto estrechamente relacionado con Phytophthora infestans. Infecta el tomate de árbol (Solanum betaceum) en el norte de Sudamérica, pero, en condiciones naturales, no puede infectar patatas o tomates, los principales hospedadores de su especie hermana P. infestans. Caracterizamos y comparamos los repertorios efectores de P. betacei y otras especies de Phytophthora. Con este fin, utilizamos enfoques in silico para predecir y describir el repertorio de proteínas secretadas en especies de Phytophthora y determinar efectores únicos y centrales. P. betacei tiene el proteoma y secretoma más grandes de todas las especies de Phytophthora evaluadas. Identificamos entre 450 y 1933 genes efectores candidatos en los genomas de P. ramorum, P. sojae, P. cactorum, P. parasitica, P. palmivora, P. infestans y P. betacei. El secretoma predicho de P. betacei contiene 5653 proteínas, 1126 de las cuales son efectores apoplásicos y 807 efectores citoplásmicos.Magíster en Biología ComputacionalMaestría30 hojasapplication/pdfengUniversidad de los AndesMaestría en Biología ComputacionalFacultad de CienciasDepartamento de Ciencias BiológicasEffector repertoire of Phytophthora betacei : in search of possible virulence factors responsible for its host specificityTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesishttp://purl.org/coar/version/c_970fb48d4fbd8a85Texthttp://purl.org/redcol/resource_type/TMOomicetesPhytophthoraParásitos en las plantasPlantas parásitasPatología vegetalGenómica comparativaBiología computacionalRelaciones planta-microbioBiología201525120Publicationhttps://scholar.google.es/citations?user=7_dVIeAAAAAJvirtual::4958-10000-0001-9016-1040virtual::4958-1https://scienti.minciencias.gov.co/cvlac/visualizador/generarCurriculoCv.do?cod_rh=0000468800virtual::4958-1d7d594d1-aae9-471e-be1d-fc6bbcabef5cvirtual::4958-1d7d594d1-aae9-471e-be1d-fc6bbcabef5cvirtual::4958-1ORIGINAL22750.pdfapplication/pdf7052394https://repositorio.uniandes.edu.co/bitstreams/39f4a4ee-d484-4f8e-bdaf-d19654ccb2e3/download2398487976779d3e2c70033be4e78a3dMD51THUMBNAIL22750.pdf.jpg22750.pdf.jpgIM Thumbnailimage/jpeg10098https://repositorio.uniandes.edu.co/bitstreams/f3dc47f1-b440-4c1a-a425-d76fbfe31a59/downloadbf9a4b46eb4a4501b0f3ee818ae220bdMD55TEXT22750.pdf.txt22750.pdf.txtExtracted texttext/plain60260https://repositorio.uniandes.edu.co/bitstreams/a099c4af-f203-4b56-ae62-ff65e8ffad0e/downloadc4dc7e5749569641c005af91a977e069MD541992/51679oai:repositorio.uniandes.edu.co:1992/516792024-03-13 12:49:03.538http://creativecommons.org/licenses/by-nc-sa/4.0/open.accesshttps://repositorio.uniandes.edu.coRepositorio institucional Sénecaadminrepositorio@uniandes.edu.co |