Validation of the effector profile of Phytophthora betacei
Phytophthora betacei is a new species that was determined through a set of genetic, ecologic and morphological characteristics that make it stand it apart independently from P. infestans. This new species is capable of infecting tree tomato (Solanum betaceum) yet it is not able to infect common pota...
- Autores:
-
Rivera Ladino, José Miguel
- Tipo de recurso:
- Trabajo de grado de pregrado
- Fecha de publicación:
- 2017
- Institución:
- Universidad de los Andes
- Repositorio:
- Séneca: repositorio Uniandes
- Idioma:
- eng
- OAI Identifier:
- oai:repositorio.uniandes.edu.co:1992/39984
- Acceso en línea:
- http://hdl.handle.net/1992/39984
- Palabra clave:
- Phytophthora infestans
Tomate de árbol
Fungicidas sistémicos
Microbiología
- Rights
- openAccess
- License
- http://creativecommons.org/licenses/by-nc-sa/4.0/
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Validation of the effector profile of Phytophthora betacei |
| title |
Validation of the effector profile of Phytophthora betacei |
| spellingShingle |
Validation of the effector profile of Phytophthora betacei Phytophthora infestans Tomate de árbol Fungicidas sistémicos Microbiología |
| title_short |
Validation of the effector profile of Phytophthora betacei |
| title_full |
Validation of the effector profile of Phytophthora betacei |
| title_fullStr |
Validation of the effector profile of Phytophthora betacei |
| title_full_unstemmed |
Validation of the effector profile of Phytophthora betacei |
| title_sort |
Validation of the effector profile of Phytophthora betacei |
| dc.creator.fl_str_mv |
Rivera Ladino, José Miguel |
| dc.contributor.advisor.none.fl_str_mv |
Restrepo Restrepo, Silvia Mideros Bastidas, María Fernanda |
| dc.contributor.author.none.fl_str_mv |
Rivera Ladino, José Miguel |
| dc.subject.keyword.es_CO.fl_str_mv |
Phytophthora infestans Tomate de árbol Fungicidas sistémicos |
| topic |
Phytophthora infestans Tomate de árbol Fungicidas sistémicos Microbiología |
| dc.subject.themes.none.fl_str_mv |
Microbiología |
| description |
Phytophthora betacei is a new species that was determined through a set of genetic, ecologic and morphological characteristics that make it stand it apart independently from P. infestans. This new species is capable of infecting tree tomato (Solanum betaceum) yet it is not able to infect common potato species. The effector proteins determine this host-pathogen interaction, RXLR and Crinkler effectors are the most studied in the Phytophthora genus for its degree of conserved regions. A bioinformatic study did predictions of new effectors based on the sequenced fragments of samples of the infecting agent that caused an outbreak in Pasto, Colombia. The objective of this study was to validate some of this predictions and contribute to the genetic profile of this new species. There were two gene candidates that are potentially unique genes for P. betacei. Finally, Pex151803 was validated experimentally as an effector gene |
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2017 |
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2017 |
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2020-06-10T16:43:11Z |
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2020-06-10T16:43:11Z |
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Trabajo de grado - Pregrado |
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http://purl.org/coar/version/c_970fb48d4fbd8a85 |
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http://hdl.handle.net/1992/39984 |
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u807563.pdf |
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instname:Universidad de los Andes |
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reponame:Repositorio Institucional Séneca |
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repourl:https://repositorio.uniandes.edu.co/ |
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http://hdl.handle.net/1992/39984 |
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u807563.pdf instname:Universidad de los Andes reponame:Repositorio Institucional Séneca repourl:https://repositorio.uniandes.edu.co/ |
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eng |
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eng |
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http://creativecommons.org/licenses/by-nc-sa/4.0/ |
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info:eu-repo/semantics/openAccess |
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http://creativecommons.org/licenses/by-nc-sa/4.0/ http://purl.org/coar/access_right/c_abf2 |
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openAccess |
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12 hojas |
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application/pdf |
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Universidad de los Andes |
| dc.publisher.program.es_CO.fl_str_mv |
Microbiología |
| dc.publisher.faculty.es_CO.fl_str_mv |
Facultad de Ciencias |
| dc.publisher.department.es_CO.fl_str_mv |
Departamento de Ciencias Biológicas |
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Al consultar y hacer uso de este recurso, está aceptando las condiciones de uso establecidas por los autores.http://creativecommons.org/licenses/by-nc-sa/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Restrepo Restrepo, Silviavirtual::13351-1Mideros Bastidas, María Fernandavirtual::13352-1Rivera Ladino, José Miguela4279642-03d9-4202-8b13-47ced4da2eb85002020-06-10T16:43:11Z2020-06-10T16:43:11Z2017http://hdl.handle.net/1992/39984u807563.pdfinstname:Universidad de los Andesreponame:Repositorio Institucional Sénecarepourl:https://repositorio.uniandes.edu.co/Phytophthora betacei is a new species that was determined through a set of genetic, ecologic and morphological characteristics that make it stand it apart independently from P. infestans. This new species is capable of infecting tree tomato (Solanum betaceum) yet it is not able to infect common potato species. The effector proteins determine this host-pathogen interaction, RXLR and Crinkler effectors are the most studied in the Phytophthora genus for its degree of conserved regions. A bioinformatic study did predictions of new effectors based on the sequenced fragments of samples of the infecting agent that caused an outbreak in Pasto, Colombia. The objective of this study was to validate some of this predictions and contribute to the genetic profile of this new species. There were two gene candidates that are potentially unique genes for P. betacei. Finally, Pex151803 was validated experimentally as an effector gene"Phytophthora betacei es una nueva especie que se determino a partir de un estudio genetico, morfologico y ecologico que la separan de P. infestans. Esta nueva especie es capaz de infectar tomate de arbol (Solanum betaceum) pero no es capaz de infectar especies de papa. Las efectores son proteinas que determinan estas interacciones de hospedero-parasito. Los RXLR y los Crinklers son los mas estudiados para el genero Phytophthora y a su vez tiene un grado alto de regiones conservadas. A partir de un estudio bioinformatico del perfil de esta nueva especie se elaboraron predicciones sobre nuevos efectores basados en secuenciacion de muestras que causaron una epidemia en Pasto, Colombia. El objetivo de este estudio es validar estar predicciones y contribuir al perfil genetico de esta nueva especie. Hubo dos candidatos que son potencialmente genes unicos para P. betacei. Finalmente, el gen Pex151803 fue validado experimentalmente como un efector."--Tomado del Formato de Documento de GradoMicrobiólogoPregrado12 hojasapplication/pdfengUniversidad de los AndesMicrobiologíaFacultad de CienciasDepartamento de Ciencias Biológicasinstname:Universidad de los Andesreponame:Repositorio Institucional SénecaValidation of the effector profile of Phytophthora betaceiTrabajo de grado - Pregradoinfo:eu-repo/semantics/bachelorThesishttp://purl.org/coar/resource_type/c_7a1fhttp://purl.org/coar/version/c_970fb48d4fbd8a85Texthttp://purl.org/redcol/resource_type/TPPhytophthora infestansTomate de árbolFungicidas sistémicosMicrobiologíaPublicationhttps://scholar.google.es/citations?user=7_dVIeAAAAAJvirtual::13351-10000-0001-9016-1040virtual::13351-1https://scienti.minciencias.gov.co/cvlac/visualizador/generarCurriculoCv.do?cod_rh=0000468800virtual::13351-1https://scienti.minciencias.gov.co/cvlac/visualizador/generarCurriculoCv.do?cod_rh=0000620505virtual::13352-1d7d594d1-aae9-471e-be1d-fc6bbcabef5cvirtual::13351-1ed23f670-0672-4034-93dc-b7de12470813virtual::13352-1d7d594d1-aae9-471e-be1d-fc6bbcabef5cvirtual::13351-1ed23f670-0672-4034-93dc-b7de12470813virtual::13352-1ORIGINALu807563.pdfapplication/pdf374706https://repositorio.uniandes.edu.co/bitstreams/11b89c22-82b6-4547-9c81-3fa221f39d96/download14ef8e75153bf601e30f935b67afaf1dMD51TEXTu807563.pdf.txtu807563.pdf.txtExtracted texttext/plain15732https://repositorio.uniandes.edu.co/bitstreams/8f9114bb-c405-4a82-aff1-7a1951cb2669/download763cf2497637f1565f027de7496e578eMD54THUMBNAILu807563.pdf.jpgu807563.pdf.jpgIM Thumbnailimage/jpeg5889https://repositorio.uniandes.edu.co/bitstreams/208b1599-962f-4203-9a5f-f329bf47eaa7/download2dad0c9ef67c0a769a2591c71b75ff21MD551992/39984oai:repositorio.uniandes.edu.co:1992/399842024-03-13 14:54:58.153http://creativecommons.org/licenses/by-nc-sa/4.0/open.accesshttps://repositorio.uniandes.edu.coRepositorio institucional Sénecaadminrepositorio@uniandes.edu.co |