Producción de alcanos en E.coli usando fotoenzimas: Diseño y simulación de un plásmido de alta expresión.

Investigación experimental se realizó en el laboratorio de biofísica de la Universidad de los Andes.

Autores:
Osorio Vivas, Juan Sebastián
Tipo de recurso:
Trabajo de grado de pregrado
Fecha de publicación:
2023
Institución:
Universidad de los Andes
Repositorio:
Séneca: repositorio Uniandes
Idioma:
spa
OAI Identifier:
oai:repositorio.uniandes.edu.co:1992/64205
Acceso en línea:
http://hdl.handle.net/1992/64205
Palabra clave:
E.coli
Fotoenzimas
Hidrocarburos
Alcanos
Plasmido
Biofísica
Bioquímica
Física
Rights
openAccess
License
Attribution-NoDerivatives 4.0 Internacional
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repository_id_str
dc.title.none.fl_str_mv Producción de alcanos en E.coli usando fotoenzimas: Diseño y simulación de un plásmido de alta expresión.
title Producción de alcanos en E.coli usando fotoenzimas: Diseño y simulación de un plásmido de alta expresión.
spellingShingle Producción de alcanos en E.coli usando fotoenzimas: Diseño y simulación de un plásmido de alta expresión.
E.coli
Fotoenzimas
Hidrocarburos
Alcanos
Plasmido
Biofísica
Bioquímica
Física
title_short Producción de alcanos en E.coli usando fotoenzimas: Diseño y simulación de un plásmido de alta expresión.
title_full Producción de alcanos en E.coli usando fotoenzimas: Diseño y simulación de un plásmido de alta expresión.
title_fullStr Producción de alcanos en E.coli usando fotoenzimas: Diseño y simulación de un plásmido de alta expresión.
title_full_unstemmed Producción de alcanos en E.coli usando fotoenzimas: Diseño y simulación de un plásmido de alta expresión.
title_sort Producción de alcanos en E.coli usando fotoenzimas: Diseño y simulación de un plásmido de alta expresión.
dc.creator.fl_str_mv Osorio Vivas, Juan Sebastián
dc.contributor.advisor.none.fl_str_mv Pedraza Leal, Juan Manuel
dc.contributor.author.none.fl_str_mv Osorio Vivas, Juan Sebastián
dc.contributor.jury.none.fl_str_mv Forero Shelton, Antonio Manu
dc.contributor.researchgroup.es_CO.fl_str_mv Biofísica Uniandes
dc.subject.keyword.none.fl_str_mv E.coli
Fotoenzimas
Hidrocarburos
Alcanos
Plasmido
Biofísica
Bioquímica
topic E.coli
Fotoenzimas
Hidrocarburos
Alcanos
Plasmido
Biofísica
Bioquímica
Física
dc.subject.themes.es_CO.fl_str_mv Física
description Investigación experimental se realizó en el laboratorio de biofísica de la Universidad de los Andes.
publishDate 2023
dc.date.accessioned.none.fl_str_mv 2023-01-25T21:33:44Z
dc.date.available.none.fl_str_mv 2023-01-25T21:33:44Z
dc.date.issued.none.fl_str_mv 2023-01-25
dc.type.es_CO.fl_str_mv Trabajo de grado - Pregrado
dc.type.driver.none.fl_str_mv info:eu-repo/semantics/bachelorThesis
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dc.language.iso.es_CO.fl_str_mv spa
language spa
dc.relation.references.es_CO.fl_str_mv U.S. Energy Information Administration - EIA - independent statistics and analysis. U.S. energy facts explained - consumption and production - U.S. Energy Information Administration (EIA), May 2021.
Hannah Ritchie and Max Roser. Energy use worldwide. Our World in Data, 2020.
annah Ritchie. How long before we run out of fossil fuels? Our World in Data, Aug 2017
David E. Sadava, David M. Hillis, H. Craig Heller, and M. Berenbaum. Life: The science of biology. Sinauer, 2014
aul Singleton. Bacteria in biology, biotechnology, and medicine. John Wiley, 1999.
Escherichia coli - Details - Public Health Image Library(PHIL). Centers for Disease Control and Prevention, 2006.
Bruce Alberts, Rebecca Heald, Alexander Johnson, David Morgan, Martin Raff, Keith Roberts, and Peter Walter. Molecular biology of the cell. W. W. Norton amp; Companyf, 2022.
Stanley N. Cohen, Annie C. Chang, Herbert W. Boyer, and Robert B. Helling. Construction of biologically functional bacterial plasmids in vitro. Proceedings of the National Academy of Sciences, 1973
Nabih A Baeshen, Mohammed N Baeshen, Abdullah Sheikh, Roop S Bora, Mohamed Morsi M Ahmed, Hassan A I Ramadan, Kulvinder Singh Saini, and Elrashdy M Redwan. Cell factories for insulin production. Microb Cell Fact, 13(1), oct 2014.
Addgene. Plasmid cloning by restriction enzyme digest (aka subcloning). https://www. addgene.org/protocols/subcloning/, 2017.
Damien Sorigué, Bertrand Légeret, Stéphan Cuiné, Stéphanie Blangy, Solène Moulin, Emmanuelle Billon, Pierre Richaud, Sabine Brugière, Yohann Couté, Didier Nurizzo, Pavel Müller, Klaus Brettel, David Pignol, Pascal Arnoux, Yonghua Li-Beisson, Gilles Peltier, and Fred Beisson. An algal photoenzyme converts fatty acids to hydrocarbons. Science, 357(6354):903-907, sep 2017
Mengshi Xiao, Derong Lin, Zhuohao Li, Jingjing Zhao, Xiaomei Long, and Zhijun Wu. Synthesis of biodiesel from waste cooking oil by one-step esterification and its structural characterization. Waste Biomass Valor, 11(5):2087-2100, nov 2018
Damien Sorigué, Bertrand Légeret, Stéphan Cuiné, Stéphanie Blangy, Solène Moulin, Emmanuelle Billon, Pierre Richaud, Sabine Brugière, Yohann Couté, Didier Nurizzo, Pavel Müller, Klaus Brettel, David Pignol, Pascal Arnoux, Yonghua Li-Beisson, Gilles Peltier, and Fred Beisson. An algal photoenzyme converts fatty acids to hydrocarbons. Science, 357(6354):903-907, sep 2017.
Edda Klipp, Wolfram Liebermeister, Christoph Wierling, Axel Kowald, and Ralf Herwig. Systems biology a textbook. Wiley-VCH Verlag GmbH and Co. KGaA, 2016.
Adrian J. Brown. Xxxvi. enzyme action. J. Chem. Soc., Trans., 81:373-388, 1902.
Daniel T Gillespie. A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. Journal of Computational Physics, 22(4):403-434, 1976.
Malgorzta M. Klosek. Markov processes: An introduction for physical scientists (Daniel t. Gillespie). SIAM Review, 35(2):324-325, 1993.
Daniel T. Gillespie. Stochastic simulation of chemical kinetics. Annual Review of Physical Chemistry, 58(1):35-55, 2007.
Michael . Elowitz and Justin Bois. 12. Stochastic Simulation of Biological Circuits. http://be150.caltech.edu/2019/handouts/12_stochastic_ simulation_all_code.html.
François Jacob and Jacques Monod. Genetic regulatory mechanisms in the synthesis of proteins. Journal of Molecular Biology, 3(3):318-356, 1961.
James Keener. Chapter 10, volume I, page 427-470. Springer, 2009.
Uri Alon. An introduction to systems biology: Design principles of biological circuits. CRC Press, 2020.
Xiaobo Guo, Ao Xia, Feng Li, Yun Huang, Xianqing Zhu, Wuyuan Zhang, Xun Zhu, and Qiang Liao. Photoenzymatic decarboxylation to produce renewable hydrocarbon fuels: A comparison between whole-cell and broken-cell biocatalysts. Energy Conversion and Management, 255:115311, March 2020.
Paul Santner, László Krisztián Szabó, Santiago Nahuel Chanquia, Aske Høj Merrild, Frank Hollmann, Selin Kara, and Bekir Engin Eser. Optimization and engineering of fatty acid photodecarboxylase for substrate specificity. ChemCatChem, 13(18):4038-4046, July 2021.
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dc.format.extent.es_CO.fl_str_mv 68 páginas
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dc.publisher.es_CO.fl_str_mv Universidad de los Andes
dc.publisher.program.es_CO.fl_str_mv Física
dc.publisher.faculty.es_CO.fl_str_mv Facultad de Ciencias
dc.publisher.department.es_CO.fl_str_mv Departamento de Física
institution Universidad de los Andes
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spelling Attribution-NoDerivatives 4.0 Internacionalhttp://creativecommons.org/licenses/by-nd/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Pedraza Leal, Juan Manuelvirtual::10223-1Osorio Vivas, Juan Sebastiáne27443e9-4d16-49f2-b014-6cee22a74690600Forero Shelton, Antonio ManuBiofísica Uniandes2023-01-25T21:33:44Z2023-01-25T21:33:44Z2023-01-25http://hdl.handle.net/1992/64205instname:Universidad de los Andesreponame:Repositorio Institucional Sénecarepourl:https://repositorio.uniandes.edu.co/Investigación experimental se realizó en el laboratorio de biofísica de la Universidad de los Andes.Se diseñó un plásmido de alta expresión para la producción de la fotoenzima CvFAP (Chlorella variabilis photoenzyme) que descarboxila ácidos grasos en alcanos. Se implementó un protocolo experimental que confirmó la producción de alcanos debido a la enzima en presencia de luz azul.FísicoPregrado68 páginasapplication/pdfspaUniversidad de los AndesFísicaFacultad de CienciasDepartamento de FísicaProducción de alcanos en E.coli usando fotoenzimas: Diseño y simulación de un plásmido de alta expresión.Trabajo de grado - Pregradoinfo:eu-repo/semantics/bachelorThesisinfo:eu-repo/semantics/acceptedVersionhttp://purl.org/coar/resource_type/c_7a1fTexthttp://purl.org/redcol/resource_type/TPE.coliFotoenzimasHidrocarburosAlcanosPlasmidoBiofísicaBioquímicaFísicaU.S. Energy Information Administration - EIA - independent statistics and analysis. U.S. energy facts explained - consumption and production - U.S. Energy Information Administration (EIA), May 2021.Hannah Ritchie and Max Roser. Energy use worldwide. Our World in Data, 2020.annah Ritchie. How long before we run out of fossil fuels? Our World in Data, Aug 2017David E. Sadava, David M. Hillis, H. Craig Heller, and M. Berenbaum. Life: The science of biology. Sinauer, 2014aul Singleton. Bacteria in biology, biotechnology, and medicine. John Wiley, 1999.Escherichia coli - Details - Public Health Image Library(PHIL). Centers for Disease Control and Prevention, 2006.Bruce Alberts, Rebecca Heald, Alexander Johnson, David Morgan, Martin Raff, Keith Roberts, and Peter Walter. Molecular biology of the cell. W. W. Norton amp; Companyf, 2022.Stanley N. Cohen, Annie C. Chang, Herbert W. Boyer, and Robert B. Helling. Construction of biologically functional bacterial plasmids in vitro. Proceedings of the National Academy of Sciences, 1973Nabih A Baeshen, Mohammed N Baeshen, Abdullah Sheikh, Roop S Bora, Mohamed Morsi M Ahmed, Hassan A I Ramadan, Kulvinder Singh Saini, and Elrashdy M Redwan. Cell factories for insulin production. Microb Cell Fact, 13(1), oct 2014.Addgene. Plasmid cloning by restriction enzyme digest (aka subcloning). https://www. addgene.org/protocols/subcloning/, 2017.Damien Sorigué, Bertrand Légeret, Stéphan Cuiné, Stéphanie Blangy, Solène Moulin, Emmanuelle Billon, Pierre Richaud, Sabine Brugière, Yohann Couté, Didier Nurizzo, Pavel Müller, Klaus Brettel, David Pignol, Pascal Arnoux, Yonghua Li-Beisson, Gilles Peltier, and Fred Beisson. An algal photoenzyme converts fatty acids to hydrocarbons. Science, 357(6354):903-907, sep 2017Mengshi Xiao, Derong Lin, Zhuohao Li, Jingjing Zhao, Xiaomei Long, and Zhijun Wu. Synthesis of biodiesel from waste cooking oil by one-step esterification and its structural characterization. Waste Biomass Valor, 11(5):2087-2100, nov 2018Damien Sorigué, Bertrand Légeret, Stéphan Cuiné, Stéphanie Blangy, Solène Moulin, Emmanuelle Billon, Pierre Richaud, Sabine Brugière, Yohann Couté, Didier Nurizzo, Pavel Müller, Klaus Brettel, David Pignol, Pascal Arnoux, Yonghua Li-Beisson, Gilles Peltier, and Fred Beisson. An algal photoenzyme converts fatty acids to hydrocarbons. Science, 357(6354):903-907, sep 2017.Edda Klipp, Wolfram Liebermeister, Christoph Wierling, Axel Kowald, and Ralf Herwig. Systems biology a textbook. Wiley-VCH Verlag GmbH and Co. KGaA, 2016.Adrian J. Brown. Xxxvi. enzyme action. J. Chem. Soc., Trans., 81:373-388, 1902.Daniel T Gillespie. A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. Journal of Computational Physics, 22(4):403-434, 1976.Malgorzta M. Klosek. Markov processes: An introduction for physical scientists (Daniel t. Gillespie). SIAM Review, 35(2):324-325, 1993.Daniel T. Gillespie. Stochastic simulation of chemical kinetics. Annual Review of Physical Chemistry, 58(1):35-55, 2007.Michael . Elowitz and Justin Bois. 12. Stochastic Simulation of Biological Circuits. http://be150.caltech.edu/2019/handouts/12_stochastic_ simulation_all_code.html.François Jacob and Jacques Monod. Genetic regulatory mechanisms in the synthesis of proteins. Journal of Molecular Biology, 3(3):318-356, 1961.James Keener. Chapter 10, volume I, page 427-470. Springer, 2009.Uri Alon. An introduction to systems biology: Design principles of biological circuits. CRC Press, 2020.Xiaobo Guo, Ao Xia, Feng Li, Yun Huang, Xianqing Zhu, Wuyuan Zhang, Xun Zhu, and Qiang Liao. Photoenzymatic decarboxylation to produce renewable hydrocarbon fuels: A comparison between whole-cell and broken-cell biocatalysts. Energy Conversion and Management, 255:115311, March 2020.Paul Santner, László Krisztián Szabó, Santiago Nahuel Chanquia, Aske Høj Merrild, Frank Hollmann, Selin Kara, and Bekir Engin Eser. Optimization and engineering of fatty acid photodecarboxylase for substrate specificity. 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