Diseño in-silico y sintesis de posibles candidatos para el tratamiento de leucemia linfoblástica aguda apartir de diseños qsar y modelos de acoplamiento molecular
La leucemia linfoblástica aguda (LLA) es altamente prevalente tanto en poblaciones pediátricas como en adultas. Aunque existen 156 tratamientos contra el cáncer basados en pequeñas moléculas aprobados, solo cinco están dirigidos a todos los tipos de leucemia. Sin embargo, estos tratamientos presenta...
- Autores:
-
Cristhian Camilo, Alvarez Gómez
- Tipo de recurso:
- https://purl.org/coar/resource_type/c_7a1f
- Fecha de publicación:
- 2024
- Institución:
- Universidad El Bosque
- Repositorio:
- Repositorio U. El Bosque
- Idioma:
- eng
- OAI Identifier:
- oai:repositorio.unbosque.edu.co:20.500.12495/13377
- Acceso en línea:
- https://hdl.handle.net/20.500.12495/13377
- Palabra clave:
- Antitumoral
LLA (Leucemia Linfoblástica Aguda)
CADD (Diseño de Fármacos Asistido por Computadora)
Carbamazepina
615.19
Antitumoral
ALL
CADD (Computer-Aided Drug Design)
Carbamazepine
- Rights
- closedAccess
- License
- Acceso cerrado
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dc.title.none.fl_str_mv |
Diseño in-silico y sintesis de posibles candidatos para el tratamiento de leucemia linfoblástica aguda apartir de diseños qsar y modelos de acoplamiento molecular |
dc.title.translated.none.fl_str_mv |
Design, synthesis, and in vitro evaluation of a carbamazepine 2 derivative with antitumor potential in a model of acute lym-3 phoblastic leukemia |
title |
Diseño in-silico y sintesis de posibles candidatos para el tratamiento de leucemia linfoblástica aguda apartir de diseños qsar y modelos de acoplamiento molecular |
spellingShingle |
Diseño in-silico y sintesis de posibles candidatos para el tratamiento de leucemia linfoblástica aguda apartir de diseños qsar y modelos de acoplamiento molecular Antitumoral LLA (Leucemia Linfoblástica Aguda) CADD (Diseño de Fármacos Asistido por Computadora) Carbamazepina 615.19 Antitumoral ALL CADD (Computer-Aided Drug Design) Carbamazepine |
title_short |
Diseño in-silico y sintesis de posibles candidatos para el tratamiento de leucemia linfoblástica aguda apartir de diseños qsar y modelos de acoplamiento molecular |
title_full |
Diseño in-silico y sintesis de posibles candidatos para el tratamiento de leucemia linfoblástica aguda apartir de diseños qsar y modelos de acoplamiento molecular |
title_fullStr |
Diseño in-silico y sintesis de posibles candidatos para el tratamiento de leucemia linfoblástica aguda apartir de diseños qsar y modelos de acoplamiento molecular |
title_full_unstemmed |
Diseño in-silico y sintesis de posibles candidatos para el tratamiento de leucemia linfoblástica aguda apartir de diseños qsar y modelos de acoplamiento molecular |
title_sort |
Diseño in-silico y sintesis de posibles candidatos para el tratamiento de leucemia linfoblástica aguda apartir de diseños qsar y modelos de acoplamiento molecular |
dc.creator.fl_str_mv |
Cristhian Camilo, Alvarez Gómez |
dc.contributor.advisor.none.fl_str_mv |
James Oswaldo, Guevara Pulido |
dc.contributor.author.none.fl_str_mv |
Cristhian Camilo, Alvarez Gómez |
dc.contributor.orcid.none.fl_str_mv |
Cristhian Camilo, Alvarez Gómez [0009-0007-5059-3392] |
dc.subject.none.fl_str_mv |
Antitumoral LLA (Leucemia Linfoblástica Aguda) CADD (Diseño de Fármacos Asistido por Computadora) Carbamazepina |
topic |
Antitumoral LLA (Leucemia Linfoblástica Aguda) CADD (Diseño de Fármacos Asistido por Computadora) Carbamazepina 615.19 Antitumoral ALL CADD (Computer-Aided Drug Design) Carbamazepine |
dc.subject.ddc.none.fl_str_mv |
615.19 |
dc.subject.keywords.none.fl_str_mv |
Antitumoral ALL CADD (Computer-Aided Drug Design) Carbamazepine |
description |
La leucemia linfoblástica aguda (LLA) es altamente prevalente tanto en poblaciones pediátricas como en adultas. Aunque existen 156 tratamientos contra el cáncer basados en pequeñas moléculas aprobados, solo cinco están dirigidos a todos los tipos de leucemia. Sin embargo, estos tratamientos presentan una baja adherencia debido a los efectos secundarios. Es urgente encontrar mejores opciones terapéuticas para la LLA. Nuestro estudio ofrece una solución potencial. Diseñamos más de 50 análogos de carbamazepina mediante una combinación de métodos de diseño de fármacos basados en ligandos y en estructura. Entre estos análogos, seleccionamos el análogo CR80, que mostró valores predichos de -8,66 kcal/mol frente a la beta-tubulina y un IC50 estimado de ± 800 nM. Además, presentó valores seguros de LogP y toxicidad para su evaluación in vitro. El compuesto CR80 fue sintetizado con un rendimiento del 50% y evaluado in vitro contra la línea celular U-937, donde mostró un índice de selectividad de dos, lo que lo convierte en un candidato prometedor para evaluaciones in vivo. |
publishDate |
2024 |
dc.date.accessioned.none.fl_str_mv |
2024-11-27T00:23:52Z |
dc.date.available.none.fl_str_mv |
2024-11-27T00:23:52Z |
dc.date.issued.none.fl_str_mv |
2024-11 |
dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_7a1f |
dc.type.local.none.fl_str_mv |
Tesis/Trabajo de grado - Monografía - Pregrado |
dc.type.coar.none.fl_str_mv |
https://purl.org/coar/resource_type/c_7a1f |
dc.type.driver.none.fl_str_mv |
info:eu-repo/semantics/bachelorThesis |
dc.type.coarversion.none.fl_str_mv |
https://purl.org/coar/version/c_ab4af688f83e57aa |
format |
https://purl.org/coar/resource_type/c_7a1f |
dc.identifier.uri.none.fl_str_mv |
https://hdl.handle.net/20.500.12495/13377 |
dc.identifier.instname.spa.fl_str_mv |
Universidad El Bosque |
dc.identifier.reponame.spa.fl_str_mv |
reponame:Repositorio Institucional Universidad El Bosque |
dc.identifier.repourl.none.fl_str_mv |
repourl:https://repositorio.unbosque.edu.co |
url |
https://hdl.handle.net/20.500.12495/13377 |
identifier_str_mv |
Universidad El Bosque reponame:Repositorio Institucional Universidad El Bosque repourl:https://repositorio.unbosque.edu.co |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.references.none.fl_str_mv |
1. Terwilliger T, Abdul-Hay M. Acute lymphoblastic leukemia: a comprehensive review and 2017 update. Blood Cancer J [Internet]. 2017;7(6):e577–e577. Disponible en: http://dx.doi.org/10.1038/bcj.2017.53 2. Manuals MSD. Acute Lymphoblastic Leukemia (ALL) - acute Lymphoblastic Leukemia (ALL) - MSD manual professional edition. 2016. 3. Li R, Ma X-L, Gou C, Tse WKF. Editorial: Novel small molecules in targeted cancer therapy. Front Pharmacol [Internet]. 2023;14:1272523. Disponible en: http://dx.doi.org/10.3389/fphar.2023.1272523 4. Anand U, Dey A, Chandel AKS, Sanyal R, Mishra A, Pandey DK, et al. Cancer chemotherapy and beyond Current status, drug candidates, associated risks and pro-gress in targeted therapeutics. Genes Dis [Internet]. 2023;10(4):1367–401. Disponible en: http://dx.doi.org/10.1016/j.gendis.2022.02.007 6. Schmiegelow K, Attarbaschi A, Barzilai S, Escherich G, Frandsen TL, Halsey C, et al. Consensus definitions of 14 severe acute toxic effects for childhood lymphoblastic leukaemia treatment: a Delphi consensus. Lancet Oncol [Internet]. 2016;17(6):e231–9. Disponible en: http://dx.doi.org/10.1016/S1470-2045(16)30035-3 6. Schmiegelow K, Attarbaschi A, Barzilai S, Escherich G, Frandsen TL, Halsey C, et 396 al. Consensus definitions of 14 severe acute toxic effects for childhood lymphoblastic leu-397 kaemia treatment: a Delphi consensus. Lancet Oncol [Internet]. 2016;17(6):e231–9. Dis-398 ponible en: http://dx.doi.org/10.1016/S1470-2045(16)30035-3 7. Kuhlen M, Kunstreich M, Gökbuget N, Escherich G. Osteonekrosen – gravie-rende Therapiefolge bei akuter lymphoblastischer Leukämie. Orthopadie (Heidelb) [Internet]. 2022;51(10):792–9. Disponible en: http://dx.doi.org/10.1007/s00132-022-04301-1 8. Aytaç S, Gümrük F, Cetin M, Tuncer M, Yetgin S. Acral erythema with bullous formation: a side effect of chemotherapy in a child with acute lymphoblastic leukemia. Turk J Pediatr. 2010;52(2):211–4. 9. Yu W, MacKerell AD Jr. Computer-aided drug design methods. En: Methods in Molecular Biology. New York, NY: Springer New York; 2017. p. 85–106. 10. Vemula D, Jayasurya P, Sushmitha V, Kumar YN, Bhandari V. CADD, AI and ML in drug discovery: A comprehensive review. Eur J Pharm Sci [Internet]. 2023;181(106324):106324. Disponible en: http://dx.doi.org/10.1016/j.ejps.2022.106324 11. Niazi SK, Mariam Z. Computer-Aided Drug Design and drug discovery: A prospective analysis. Pharmaceuticals (Basel) [Internet]. 2023;17(1):22. Disponible en: http://dx.doi.org/10.3390/ph17010022 12. Silverman DA, Chapron DJ. Lymphopenic effect of carbamazepine in a patient with chronic lymphocytic leukemia. Ann Pharmacother [Internet]. 1995;29(9):865–7. Disponible en: http://dx.doi.org/10.1177/106002809502900906 13. Meng Q, Chen X, Sun L, Zhao C, Sui G, Cai L. Carbamazepine promotes Her-2 protein degradation in breast cancer cells by modulating HDAC6 activity and acetyla-tion of Hsp90. Mol Cell Biochem [Internet]. 2011;348(1– 2):165–71. Disponible en: http://dx.doi.org/10.1007/s11010-010-0651-y 14. Zhao reported that CBZ has an affinity for the Frizzled FZD8 receptor (via Wnt); inhibiting this receptor decreases bone remodeling and promotes the apoptosis of bone cells, which are the origin of some types of leukemia. 2020. 15. Fonseca-Benítez V, Acosta-Guzmán P, Sánchez JE, Alarcón Z, Jiménez RA, Guevara-Pulido J. Design and evaluation of NSAID derivatives as AKR1C3 inhibitors for breast cancer treatment through computer-aided drug design and in vitro analysis. Molecules [Internet]. 2024;29(8). Disponible en: http://dx.doi.org/10.3390/molecules29081802 16. Jaramillo DN, Millán D, Guevara-Pulido J. Design, synthesis and cytotoxic evaluation of a selective serotonin reuptake inhibitor (SSRI) by virtual screening. Eur J Pharm Sci [Internet]. 2023;183(106403):106403. Disponible en: http://dx.doi.org/10.1016/j.ejps.2023.106403 17. Prieto M, Niño A, Acosta-Guzmán P, Guevara-Pulido J. Design and synthesis of a potential selective JAK-3 inhibitor for the treatment of rheumatoid arthritis using predictive QSAR models. Inform Med Unlocked [Internet]. 2024;45(101464):101464. Disponible en: http://dx.doi.org/10.1016/j.imu.2024.101464 18. Atherton J, Luo Y, Xiang S, Yang C, Rai A, Jiang K, et al. Structural determinants of microtubule minus end preference in CAMSAP CKK domains. Nat Commun [In-ternet]. 2019;10(1). Disponible en: http://dx.doi.org/10.1038/s41467-019-13247-6 19. Huey R, Morris GM, Forli S. The Scripps Research Institute Molecular Graphics Laboratory; 2012. Using AutoDock 4 and AutoDock Vina with AutoDockTools: A Tu-torial. 20. Hanwell MD, Curtis DE, Lonie DC, Vandermeersch T, Zurek E, Hutchison GR. Avogadro: an advanced semantic chemical editor, visualization, and analysis platform. J Cheminform [Internet]. 2012;4(1):17. Disponible en: http://dx.doi.org/10.1186/1758-2946-4-17 21. Guevara-Pulido J, Jiménez RA, Morantes SJ, Jaramillo DN, Acosta-Guzmán P. Design, synthesis, and development of 4‐[(7‐chloroquinoline‐4‐yl)amino]phenol as a potential SARS‐CoV‐2 Mpro inhibitor. ChemistrySelect [Internet]. 2022;7(15). Dis-ponible en: http://dx.doi.org/10.1002/slct.202200125 22. Yap CW. PaDEL-descriptor: an open source software to calculate molecular descriptors and fingerprints. J Comput Chem [Internet]. 2011;32(7):1466–74. Disponible en: http://dx.doi.org/10.1002/jcc.21707 23. Alexander DLJ, Tropsha A, Winkler DA. Beware of R2: Simple, Unambiguous Assessment of the Prediction Environmental Science: Water Research & Technology Paper Accuracy of QSAR and QSPR Models. J Chem Inf Model. 2015;(7):1316–22. 24. Golbraikh A, Tropsha A. Beware of q2! J Mol Graph Model [Internet]. 2002;20(4):269–76. Disponible en: http://dx.doi.org/10.1016/s1093-3263(01)00123-1 25. Buncherd H, Hongmanee S, Saechan C, Tansila N, Thanapongpichat S, Wanichsuwan W, et al. Latex C-serum from Hevea brasiliensis induces apoptotic cell death in a leukemic cell line. Mol Biol Rep [Internet]. 2023;50(9):7515–25. Disponible en: http://dx.doi.org/10.1007/s11033-023-08687-9 26. Fu L, Shi S, Yi J, Wang N, He Y, Wu Z, et al. ADMETlab 3.0: an updated com-prehensive online ADMET prediction platform enhanced with broader coverage, im-proved performance, API functionality and decision support. Nucleic Acids Res [In-ternet]. 2024;52(W1):W422–31. Disponible en: http://dx.doi.org/10.1093/nar/gkae236 27. Majcher U, Klejborowska G, Moshari M, Maj E, Wietrzyk J, Bartl F, et al. Anti-proliferative activity and molecular docking of novel double-modified colchicine de-rivatives. Cells [Internet]. 2018;7(11):192. Disponible en: http://dx.doi.org/10.3390/cells7110192 28. Ni H, Li C, Shi X, Hu X, Mao H. Visible-light-promoted Fe(III)-catalyzed N-H alkylation of amides and Nheterocycles. J Org Chem [Internet]. 2022;87(15):9797–805. Disponible en: http://dx.doi.org/10.1021/acs.joc.2c00854 29. Sugiura M, Hagio H, Hirabayashi R, Kobayashi S. Lewis acid-catalyzed ring-opening reactions of semicyclic N,O-acetals possessing an exocyclic nitrogen atom: mechanistic aspect and application to piperidine alkaloid synthesis. J Am Chem Soc [Internet]. 2001;123(50):12510–7. Disponible en: http://dx.doi.org/10.1021/ja0170448 30. Deng Y, Hu Z, Xue J, Yin J, Zhu T, Liu S. Visible-Light-Promoted α-C (sp3)-H Ami-nation of Ethers with Azoles and Amides. Organic Letters. 2024;26(4):933–8. |
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James Oswaldo, Guevara PulidoCristhian Camilo, Alvarez GómezCristhian Camilo, Alvarez Gómez [0009-0007-5059-3392]2024-11-27T00:23:52Z2024-11-27T00:23:52Z2024-11https://hdl.handle.net/20.500.12495/13377Universidad El Bosquereponame:Repositorio Institucional Universidad El Bosquerepourl:https://repositorio.unbosque.edu.coLa leucemia linfoblástica aguda (LLA) es altamente prevalente tanto en poblaciones pediátricas como en adultas. Aunque existen 156 tratamientos contra el cáncer basados en pequeñas moléculas aprobados, solo cinco están dirigidos a todos los tipos de leucemia. Sin embargo, estos tratamientos presentan una baja adherencia debido a los efectos secundarios. Es urgente encontrar mejores opciones terapéuticas para la LLA. Nuestro estudio ofrece una solución potencial. Diseñamos más de 50 análogos de carbamazepina mediante una combinación de métodos de diseño de fármacos basados en ligandos y en estructura. Entre estos análogos, seleccionamos el análogo CR80, que mostró valores predichos de -8,66 kcal/mol frente a la beta-tubulina y un IC50 estimado de ± 800 nM. Además, presentó valores seguros de LogP y toxicidad para su evaluación in vitro. El compuesto CR80 fue sintetizado con un rendimiento del 50% y evaluado in vitro contra la línea celular U-937, donde mostró un índice de selectividad de dos, lo que lo convierte en un candidato prometedor para evaluaciones in vivo.PregradoQuímico FarmacéuticoAcute lymphoblastic leukemia (ALL) is highly prevalent in both pediatric and adult populations. Although 156 approved cancer treatments are based on small molecules, only five are for all leukemia types. However, these treatments have low adherence due to side effects. It is urgent to find better treatments for ALL. Our study offers a potential solution. We designed more than 50 analogs to carbamazepine using a combination of ligand-based and structure-based drug design. Among these analogs, we selected the CR80 analog, which had predicted values of -8.66 kcal/mol against beta-tubulin and an expected +- 800 nM of IC50. It also exhibited safe LogP and toxicity values for in vitro evaluation. CR80 was synthesized with a yield of 50% and was evaluated in vitro against the U-937 cell line. It showed a selectivity index of two, which makes it a promising candidate for in vivo evaluations.application/pdfAntitumoralLLA (Leucemia Linfoblástica Aguda)CADD (Diseño de Fármacos Asistido por Computadora)Carbamazepina615.19AntitumoralALLCADD (Computer-Aided Drug Design)CarbamazepineDiseño in-silico y sintesis de posibles candidatos para el tratamiento de leucemia linfoblástica aguda apartir de diseños qsar y modelos de acoplamiento molecularDesign, synthesis, and in vitro evaluation of a carbamazepine 2 derivative with antitumor potential in a model of acute lym-3 phoblastic leukemiaQuímica FarmacéuticaUniversidad El BosqueFacultad de CienciasTesis/Trabajo de grado - Monografía - Pregradohttps://purl.org/coar/resource_type/c_7a1fhttp://purl.org/coar/resource_type/c_7a1finfo:eu-repo/semantics/bachelorThesishttps://purl.org/coar/version/c_ab4af688f83e57aa1. Terwilliger T, Abdul-Hay M. Acute lymphoblastic leukemia: a comprehensive review and 2017 update. Blood Cancer J [Internet]. 2017;7(6):e577–e577. Disponible en: http://dx.doi.org/10.1038/bcj.2017.532. Manuals MSD. Acute Lymphoblastic Leukemia (ALL) - acute Lymphoblastic Leukemia (ALL) - MSD manual professional edition. 2016.3. Li R, Ma X-L, Gou C, Tse WKF. Editorial: Novel small molecules in targeted cancer therapy. Front Pharmacol [Internet]. 2023;14:1272523. Disponible en: http://dx.doi.org/10.3389/fphar.2023.12725234. Anand U, Dey A, Chandel AKS, Sanyal R, Mishra A, Pandey DK, et al. Cancer chemotherapy and beyond Current status, drug candidates, associated risks and pro-gress in targeted therapeutics. Genes Dis [Internet]. 2023;10(4):1367–401. Disponible en: http://dx.doi.org/10.1016/j.gendis.2022.02.0076. Schmiegelow K, Attarbaschi A, Barzilai S, Escherich G, Frandsen TL, Halsey C, et al. Consensus definitions of 14 severe acute toxic effects for childhood lymphoblastic leukaemia treatment: a Delphi consensus. Lancet Oncol [Internet]. 2016;17(6):e231–9. Disponible en: http://dx.doi.org/10.1016/S1470-2045(16)30035-36. Schmiegelow K, Attarbaschi A, Barzilai S, Escherich G, Frandsen TL, Halsey C, et 396 al. Consensus definitions of 14 severe acute toxic effects for childhood lymphoblastic leu-397 kaemia treatment: a Delphi consensus. Lancet Oncol [Internet]. 2016;17(6):e231–9. Dis-398 ponible en: http://dx.doi.org/10.1016/S1470-2045(16)30035-37. Kuhlen M, Kunstreich M, Gökbuget N, Escherich G. Osteonekrosen – gravie-rende Therapiefolge bei akuter lymphoblastischer Leukämie. Orthopadie (Heidelb) [Internet]. 2022;51(10):792–9. Disponible en: http://dx.doi.org/10.1007/s00132-022-04301-18. Aytaç S, Gümrük F, Cetin M, Tuncer M, Yetgin S. Acral erythema with bullous formation: a side effect of chemotherapy in a child with acute lymphoblastic leukemia. Turk J Pediatr. 2010;52(2):211–4.9. Yu W, MacKerell AD Jr. Computer-aided drug design methods. En: Methods in Molecular Biology. New York, NY: Springer New York; 2017. p. 85–106.10. Vemula D, Jayasurya P, Sushmitha V, Kumar YN, Bhandari V. CADD, AI and ML in drug discovery: A comprehensive review. Eur J Pharm Sci [Internet]. 2023;181(106324):106324. Disponible en: http://dx.doi.org/10.1016/j.ejps.2022.10632411. Niazi SK, Mariam Z. Computer-Aided Drug Design and drug discovery: A prospective analysis. Pharmaceuticals (Basel) [Internet]. 2023;17(1):22. Disponible en: http://dx.doi.org/10.3390/ph1701002212. Silverman DA, Chapron DJ. Lymphopenic effect of carbamazepine in a patient with chronic lymphocytic leukemia. Ann Pharmacother [Internet]. 1995;29(9):865–7. Disponible en: http://dx.doi.org/10.1177/10600280950290090613. Meng Q, Chen X, Sun L, Zhao C, Sui G, Cai L. Carbamazepine promotes Her-2 protein degradation in breast cancer cells by modulating HDAC6 activity and acetyla-tion of Hsp90. Mol Cell Biochem [Internet]. 2011;348(1– 2):165–71. Disponible en: http://dx.doi.org/10.1007/s11010-010-0651-y14. Zhao reported that CBZ has an affinity for the Frizzled FZD8 receptor (via Wnt); inhibiting this receptor decreases bone remodeling and promotes the apoptosis of bone cells, which are the origin of some types of leukemia. 2020.15. Fonseca-Benítez V, Acosta-Guzmán P, Sánchez JE, Alarcón Z, Jiménez RA, Guevara-Pulido J. Design and evaluation of NSAID derivatives as AKR1C3 inhibitors for breast cancer treatment through computer-aided drug design and in vitro analysis. Molecules [Internet]. 2024;29(8). Disponible en: http://dx.doi.org/10.3390/molecules2908180216. Jaramillo DN, Millán D, Guevara-Pulido J. Design, synthesis and cytotoxic evaluation of a selective serotonin reuptake inhibitor (SSRI) by virtual screening. Eur J Pharm Sci [Internet]. 2023;183(106403):106403. Disponible en: http://dx.doi.org/10.1016/j.ejps.2023.10640317. Prieto M, Niño A, Acosta-Guzmán P, Guevara-Pulido J. 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