Diversidad genética de bananos y bananitos con microsatélites fluorescentes

Banana (Musa spp.) its fundamental to the economy of developing countries, including our country. Because of this reasons, the characterization of musaceas genetic diversity is essential to the management and exploitation of its genetic resources. In the current study 99 accessions from the collecti...

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Autores:
Gutierrez Salamanca, Madeleine Lieset
Tipo de recurso:
Informe
Fecha de publicación:
2017
Institución:
Universidad Nacional de Colombia
Repositorio:
Universidad Nacional de Colombia
Idioma:
spa
OAI Identifier:
oai:repositorio.unal.edu.co:unal/78310
Acceso en línea:
https://repositorio.unal.edu.co/handle/unal/78310
Palabra clave:
Diversidad genética
marcadores moleculares
Musáceas
simple sequence repeats
SSR
Genetic diversity
molecular markers
Musaceas
simple sequence repeats
SSR
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openAccess
License
Atribución-NoComercial 4.0 Internacional
id UNACIONAL2_fb9e0926b94e980cec384c76836bd96c
oai_identifier_str oai:repositorio.unal.edu.co:unal/78310
network_acronym_str UNACIONAL2
network_name_str Universidad Nacional de Colombia
repository_id_str
dc.title.spa.fl_str_mv Diversidad genética de bananos y bananitos con microsatélites fluorescentes
title Diversidad genética de bananos y bananitos con microsatélites fluorescentes
spellingShingle Diversidad genética de bananos y bananitos con microsatélites fluorescentes
Diversidad genética
marcadores moleculares
Musáceas
simple sequence repeats
SSR
Genetic diversity
molecular markers
Musaceas
simple sequence repeats
SSR
title_short Diversidad genética de bananos y bananitos con microsatélites fluorescentes
title_full Diversidad genética de bananos y bananitos con microsatélites fluorescentes
title_fullStr Diversidad genética de bananos y bananitos con microsatélites fluorescentes
title_full_unstemmed Diversidad genética de bananos y bananitos con microsatélites fluorescentes
title_sort Diversidad genética de bananos y bananitos con microsatélites fluorescentes
dc.creator.fl_str_mv Gutierrez Salamanca, Madeleine Lieset
dc.contributor.advisor.spa.fl_str_mv Muñoz Florez, Jaime Eduardo
Caicedo Arana, Alvaro
dc.contributor.author.spa.fl_str_mv Gutierrez Salamanca, Madeleine Lieset
dc.contributor.corporatename.spa.fl_str_mv Universidad Nacional sede palmira
dc.subject.proposal.spa.fl_str_mv Diversidad genética
marcadores moleculares
Musáceas
simple sequence repeats
SSR
topic Diversidad genética
marcadores moleculares
Musáceas
simple sequence repeats
SSR
Genetic diversity
molecular markers
Musaceas
simple sequence repeats
SSR
dc.subject.proposal.eng.fl_str_mv Genetic diversity
molecular markers
Musaceas
simple sequence repeats
SSR
description Banana (Musa spp.) its fundamental to the economy of developing countries, including our country. Because of this reasons, the characterization of musaceas genetic diversity is essential to the management and exploitation of its genetic resources. In the current study 99 accessions from the collection of Musa spp. that are part of the germplasm bank of the Corporación Colombiana de Investigación Agropecuaria (AGROSAVIA, Palmira, Valle del Cauca), were evaluated by twelve fluorescent microsatellite molecular markers (SSR). A total of 206 alleles were identified, with a polymorphic information content (PIC) average of 0.106 and a marker index (IM) average of 1.377, indicating the presence of polymorphic and informative markers. The expected heterozygocity and number of alleles were superior in banana and ornamentals (He=0.836–Na=14.1 y He=0.848–Na=8.5, respectively), while bananitos presented inferior values (He=0.569–Na=6.25). The dissimilarity analysis allowed to identify possible duplicate accessions, given its identical genetic profile as: NATU08, NATU09, SABO03 y SABO01. Cluster and structure analysis identified three highly differentiated population groups, one formatted by bananitos, and the other two by banana of commercial cultivars and banana with wild characteristics plus ornamental ones. In conclusion, the collection presents a high genetic diversity mainly in the banana and ornamentals and in smaller amounts in bananitos; likewise, it is divided into discrete populations with high identity and low gene flow.
publishDate 2017
dc.date.issued.spa.fl_str_mv 2017-05-16
dc.date.accessioned.spa.fl_str_mv 2020-08-28T16:09:42Z
dc.date.available.spa.fl_str_mv 2020-08-28T16:09:42Z
dc.type.spa.fl_str_mv Documento de trabajo
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dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/workingPaper
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/acceptedVersion
dc.type.coar.spa.fl_str_mv http://purl.org/coar/resource_type/c_93fc
dc.type.content.spa.fl_str_mv Text
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dc.identifier.citation.spa.fl_str_mv Gutierrez, M. Diversidad genética de bananos y bananitos con microsatélites fluorescentes. Palmira, Colombia, 2020.
dc.identifier.uri.none.fl_str_mv https://repositorio.unal.edu.co/handle/unal/78310
identifier_str_mv Gutierrez, M. Diversidad genética de bananos y bananitos con microsatélites fluorescentes. Palmira, Colombia, 2020.
url https://repositorio.unal.edu.co/handle/unal/78310
dc.language.iso.spa.fl_str_mv spa
language spa
dc.relation.references.spa.fl_str_mv Alcántara, M. R. (2007). Breve revisión de los marcadores moleculares. Ecología Molecular, 541–566.
Arias, P., Dankers, C., Liu, P., & Pilkauskas, P. (2004). La economía mundial del banano: 1985-2002. Fao. Retrieved from https://books.google.es/books?id=vaNJC7-F5WIC
Arteaga, F. (2015). Origen y evolución del banano.
Ashikin, N., Abdullah, P., Saleh, G. Bin, Tarwaca, E., Putra, S., & Wahab, Z. Bin. (2012). Genetic relationship among Musa genotypes revealed by microsatellite markers, 11(26), 6769–6775. https://doi.org/10.5897/AJB10.1319
Becerra, V., & Paredes, M. (2000). Use of biochemical and molecular markers in genetic diversity studies. Retrieved from https://dx.doi.org/10.4067/S0365-28072000000300007
Botstein, D., White, R. L., Skolnick, M., & Davis, R. W. (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. American Journal of Human Genetics, 32(3), 314–331. Retrieved from https://www.ncbi.nlm.nih.gov/pubmed/6247908
Bregård, A., Vu, P., Geitvik, G., & Børresen-Dale, A. L. (2000). Promising method for DNA extraction from paraffin embedded archive material. In Breast Cancer Research (Vol. 2, pp. P8-01). Springer.
Caicedo, A. (2015). Caracterización y evaluación morfológica, física y química de introducciones del banco de germoplasma de musáceas en el Centro de Investigación Corpoica Palmira.
Castillo, Israel, K. A. T., Baguio, S. F., Diasanta, M. D. B., Lizardo, R. C. M., Dizon, E. I., & Mejico, M. I. F. (2015). Extraction and characterization of pectin from Saba banana [Musa ’saba’(Musa acuminata x Musa balbisiana)] peel wastes: A preliminary study. International Food Research Journal, 22(1), 202–207.
Creste, S., Benatti, T., Orsi, M., Risterucci, A., & Figueira, A. (2006). Isolation and characterization of microsatellite loci from a commercial cultivar of Musa acuminata, 303–306. https://doi.org/10.1111/j.1471-8286.2005.01209.x
Cruz, C. D., Salgado, C. C., & Bhering, L. L. (2014). Chapter 3 - Biometrics Applied to Molecular Analysis in Genetic Diversity BT - Biotechnology and Plant Breeding (pp. 47–81). San Diego: Academic Press. https://doi.org/http://dx.doi.org/10.1016/B978-0-12-418672-9.00003-9
Davey, M. W., Gudimella, R., Harikrishna, J. A., Sin, L. W., Khalid, N., & Keulemans, J. (2013). “A draft Musa balbisiana genome sequence for molecular genetics in polyploid, inter- and intra-specific Musa hybrids.” BMC Genomics, 14(1). https://doi.org/10.1186/1471-2164-14-683
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Kaemmer, D., Fischer, D., Jarret, R. L., Baurens, F. C., Grapin, A., Dambier, D., Lagoda, P. J. L. (1997). Molecular breeding in the genus Musa: A strong case for STMS marker technology. Euphytica, 96(1), 49–63. https://doi.org/10.1023/A:1002922016294
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Langhe, E. De, Hr, E., & Christelova, P. (2017). Molecular and cytological characterization of the global Musa germplasm collection provides insights into the treasure of banana diversity, 801–824. https://doi.org/10.1007/s10531-016-1273-9
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Madesis, P., Ganopoulos, I., & Tsaftaris, A. (2013). Microsatellites: Evolution and Contribution. In K. S. Kantartzi (Ed.), Microsatellites: Methods and Protocols (pp. 1–13). Totowa, NJ: Humana Press. https://doi.org/10.1007/978-1-62703-389-3_1
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dc.rights.spa.fl_str_mv Derechos reservados - Universidad Nacional de Colombia
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.license.spa.fl_str_mv Atribución-NoComercial 4.0 Internacional
dc.rights.spa.spa.fl_str_mv Acceso abierto
dc.rights.uri.spa.fl_str_mv http://creativecommons.org/licenses/by-nc/4.0/
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rights_invalid_str_mv Atribución-NoComercial 4.0 Internacional
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dc.publisher.department.spa.fl_str_mv Maestría en Ciencias Biológicas
dc.publisher.branch.spa.fl_str_mv Universidad Nacional de Colombia - Sede Palmira
institution Universidad Nacional de Colombia
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spelling Atribución-NoComercial 4.0 InternacionalDerechos reservados - Universidad Nacional de ColombiaAcceso abiertohttp://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Muñoz Florez, Jaime Eduardo0d0f912e-5d4a-4351-b5b1-348a4ab59ff4-1Caicedo Arana, Alvaro406696e8-235a-4d6f-b485-62e8df63a226-1Gutierrez Salamanca, Madeleine Lieset4808aab8-1415-427f-ab7e-bd3b649f26bbUniversidad Nacional sede palmira2020-08-28T16:09:42Z2020-08-28T16:09:42Z2017-05-16Gutierrez, M. Diversidad genética de bananos y bananitos con microsatélites fluorescentes. Palmira, Colombia, 2020.https://repositorio.unal.edu.co/handle/unal/78310Banana (Musa spp.) its fundamental to the economy of developing countries, including our country. Because of this reasons, the characterization of musaceas genetic diversity is essential to the management and exploitation of its genetic resources. In the current study 99 accessions from the collection of Musa spp. that are part of the germplasm bank of the Corporación Colombiana de Investigación Agropecuaria (AGROSAVIA, Palmira, Valle del Cauca), were evaluated by twelve fluorescent microsatellite molecular markers (SSR). A total of 206 alleles were identified, with a polymorphic information content (PIC) average of 0.106 and a marker index (IM) average of 1.377, indicating the presence of polymorphic and informative markers. The expected heterozygocity and number of alleles were superior in banana and ornamentals (He=0.836–Na=14.1 y He=0.848–Na=8.5, respectively), while bananitos presented inferior values (He=0.569–Na=6.25). The dissimilarity analysis allowed to identify possible duplicate accessions, given its identical genetic profile as: NATU08, NATU09, SABO03 y SABO01. Cluster and structure analysis identified three highly differentiated population groups, one formatted by bananitos, and the other two by banana of commercial cultivars and banana with wild characteristics plus ornamental ones. In conclusion, the collection presents a high genetic diversity mainly in the banana and ornamentals and in smaller amounts in bananitos; likewise, it is divided into discrete populations with high identity and low gene flow.El banano (Musa spp.) es fundamental para la economía de países en desarrollo. Por estas razones, la caracterización de la diversidad genética de Musáceas es esencial para el manejo y aprovechamiento de los recursos genéticos. En el presente estudio se evaluaron 99 accesiones de la colección de Musa spp., que hacen parte del banco de germoplasma de la Corporación Colombiana de Investigación Agropecuaria (AGROSAVIA, Palmira, Valle del Cauca), por medio de doce microsatélites fluorescentes (SSR). Un total de 206 alelos fueron identificados, con un contenido de información polimórfica (PIC) promedio de 0.106 y un índice de marcador (IM) promedio de 1.377, indicando la presencia de marcadores polimórficos e informativos. La heterocigosidad esperada y número de alelos fue superior en los bananos y ornamentales (He=0.836 – Na= 14.1 y He=0.848 – Na= 8.5, respectivamente), mientras que los bananitos presentaron valores inferiores (He=0.569 – Na= 6.25). El análisis de disimilaridad permitió identificar posibles accesiones duplicadas, dado su perfil genético idéntico como: NATU08, NATU09, SABO03 y SABO01. El análisis de conglomerados y de estructura identificó tres grupos poblacionales altamente diferenciados, uno conformado por bananitos, y los otros dos por bananos de cultivares comerciales y bananos con características silvestres más las ornamentales. En conclusión, la colección presenta una alta diversidad genética distribuida principalmente en los bananos y ornamentales, y en menor medida en los bananitos; igualmente, se encuentra dividida en poblaciones discretas con una alta pertenencia y un escaso flujo genético.Maestríaapplication/pdfspaDiversidad genética de bananos y bananitos con microsatélites fluorescentesDocumento de trabajoinfo:eu-repo/semantics/workingPaperinfo:eu-repo/semantics/acceptedVersionhttp://purl.org/coar/resource_type/c_93fchttp://purl.org/coar/resource_type/c_8042Texthttp://purl.org/redcol/resource_type/WPPalmira - Ciencias Agropecuarias - Maestría en Ciencias BiológicasMaestría en Ciencias BiológicasUniversidad Nacional de Colombia - Sede PalmiraAlcántara, M. R. (2007). Breve revisión de los marcadores moleculares. Ecología Molecular, 541–566.Arias, P., Dankers, C., Liu, P., & Pilkauskas, P. (2004). La economía mundial del banano: 1985-2002. Fao. Retrieved from https://books.google.es/books?id=vaNJC7-F5WICArteaga, F. (2015). Origen y evolución del banano.Ashikin, N., Abdullah, P., Saleh, G. Bin, Tarwaca, E., Putra, S., & Wahab, Z. Bin. (2012). Genetic relationship among Musa genotypes revealed by microsatellite markers, 11(26), 6769–6775. https://doi.org/10.5897/AJB10.1319Becerra, V., & Paredes, M. (2000). Use of biochemical and molecular markers in genetic diversity studies. Retrieved from https://dx.doi.org/10.4067/S0365-28072000000300007Botstein, D., White, R. L., Skolnick, M., & Davis, R. W. (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. American Journal of Human Genetics, 32(3), 314–331. Retrieved from https://www.ncbi.nlm.nih.gov/pubmed/6247908Bregård, A., Vu, P., Geitvik, G., & Børresen-Dale, A. L. (2000). Promising method for DNA extraction from paraffin embedded archive material. In Breast Cancer Research (Vol. 2, pp. P8-01). Springer.Caicedo, A. (2015). Caracterización y evaluación morfológica, física y química de introducciones del banco de germoplasma de musáceas en el Centro de Investigación Corpoica Palmira.Castillo, Israel, K. A. T., Baguio, S. F., Diasanta, M. D. B., Lizardo, R. C. M., Dizon, E. I., & Mejico, M. I. F. (2015). Extraction and characterization of pectin from Saba banana [Musa ’saba’(Musa acuminata x Musa balbisiana)] peel wastes: A preliminary study. International Food Research Journal, 22(1), 202–207.Creste, S., Benatti, T., Orsi, M., Risterucci, A., & Figueira, A. (2006). Isolation and characterization of microsatellite loci from a commercial cultivar of Musa acuminata, 303–306. https://doi.org/10.1111/j.1471-8286.2005.01209.xCruz, C. D., Salgado, C. C., & Bhering, L. L. (2014). Chapter 3 - Biometrics Applied to Molecular Analysis in Genetic Diversity BT - Biotechnology and Plant Breeding (pp. 47–81). San Diego: Academic Press. https://doi.org/http://dx.doi.org/10.1016/B978-0-12-418672-9.00003-9Davey, M. 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Introduccion al analisis de cluster, 1–22.Diversidad genéticamarcadores molecularesMusáceassimple sequence repeatsSSRGenetic diversitymolecular markersMusaceassimple sequence repeatsSSRLICENSElicense.txtlicense.txttext/plain; charset=utf-83895https://repositorio.unal.edu.co/bitstream/unal/78310/2/license.txte2f63a891b6ceb28c3078128251851bfMD52ORIGINALTESIS 26-08-2020 UV.pdfTESIS 26-08-2020 UV.pdfapplication/pdf2239042https://repositorio.unal.edu.co/bitstream/unal/78310/1/TESIS%2026-08-2020%20UV.pdf1ca750c46a59fe31e3a21ed425fd7160MD51THUMBNAILTESIS 26-08-2020 UV.pdf.jpgTESIS 26-08-2020 UV.pdf.jpgGenerated Thumbnailimage/jpeg4514https://repositorio.unal.edu.co/bitstream/unal/78310/3/TESIS%2026-08-2020%20UV.pdf.jpg2a0babde09e19f3716a452208a79ee22MD53unal/78310oai:repositorio.unal.edu.co:unal/783102024-07-09 23:21:07.081Repositorio Institucional Universidad Nacional de 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