Diversity and gene flow in four Colombian turtle populations of Podocnemis vogli (Testudines: Podocnemididae)

ilustraciones, graficas, mapas

Autores:: Cárdenas Barrantes, Diana Marcela

Tipo de recurso:

Fecha de publicación:: 2021

Institución:: Universidad Nacional de Colombia

Repositorio:: Universidad Nacional de Colombia

Idioma:: eng

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network_acronym_str	UNACIONAL2
network_name_str	Universidad Nacional de Colombia
repository_id_str
dc.title.eng.fl_str_mv	Diversity and gene flow in four Colombian turtle populations of Podocnemis vogli (Testudines: Podocnemididae)
dc.title.translated.spa.fl_str_mv	Diversidad y flujo genético en cuatro poblaciones colombianas de la tortuga Podocnemis vogli (Testudines: Podocnemididae)
title	Diversity and gene flow in four Colombian turtle populations of Podocnemis vogli (Testudines: Podocnemididae)
spellingShingle	Diversity and gene flow in four Colombian turtle populations of Podocnemis vogli (Testudines: Podocnemididae) 590 - Animales::597 - Vertebrados de sangre fría Conservation Microsatellites Cyt b Genetic diversity Gene flow Cross-amplification test Conservación genética Microsatélites Variabilidad genética Flujo génico Amplificación cruzada
title_short	Diversity and gene flow in four Colombian turtle populations of Podocnemis vogli (Testudines: Podocnemididae)
title_full	Diversity and gene flow in four Colombian turtle populations of Podocnemis vogli (Testudines: Podocnemididae)
title_fullStr	Diversity and gene flow in four Colombian turtle populations of Podocnemis vogli (Testudines: Podocnemididae)
title_full_unstemmed	Diversity and gene flow in four Colombian turtle populations of Podocnemis vogli (Testudines: Podocnemididae)
title_sort	Diversity and gene flow in four Colombian turtle populations of Podocnemis vogli (Testudines: Podocnemididae)
dc.creator.fl_str_mv	Cárdenas Barrantes, Diana Marcela
dc.contributor.advisor.none.fl_str_mv	Vargas Ramírez, Mario Alfonso
dc.contributor.author.none.fl_str_mv	Cárdenas Barrantes, Diana Marcela
dc.contributor.researchgroup.spa.fl_str_mv	Biodiversidad y Conservación Genética
dc.subject.ddc.spa.fl_str_mv	590 - Animales::597 - Vertebrados de sangre fría
topic	590 - Animales::597 - Vertebrados de sangre fría Conservation Microsatellites Cyt b Genetic diversity Gene flow Cross-amplification test Conservación genética Microsatélites Variabilidad genética Flujo génico Amplificación cruzada
dc.subject.proposal.eng.fl_str_mv	Conservation Microsatellites Cyt b Genetic diversity Gene flow Cross-amplification test Conservación genética Microsatélites
dc.subject.proposal.spa.fl_str_mv	Variabilidad genética Flujo génico Amplificación cruzada
description	ilustraciones, graficas, mapas
publishDate	2021
dc.date.issued.none.fl_str_mv	2021-11
dc.date.accessioned.none.fl_str_mv	2022-08-30T15:09:29Z
dc.date.available.none.fl_str_mv	2022-08-30T15:09:29Z
dc.type.spa.fl_str_mv	Trabajo de grado - Maestría
dc.type.driver.spa.fl_str_mv	info:eu-repo/semantics/masterThesis
dc.type.version.spa.fl_str_mv	info:eu-repo/semantics/acceptedVersion
dc.type.content.spa.fl_str_mv	Text
dc.type.redcol.spa.fl_str_mv	http://purl.org/redcol/resource_type/TM
status_str	acceptedVersion
dc.identifier.uri.none.fl_str_mv	https://repositorio.unal.edu.co/handle/unal/82192
dc.identifier.instname.spa.fl_str_mv	Universidad Nacional de Colombia
dc.identifier.reponame.spa.fl_str_mv	Repositorio Institucional Universidad Nacional de Colombia
dc.identifier.repourl.spa.fl_str_mv	https://repositorio.unal.edu.co/
url	https://repositorio.unal.edu.co/handle/unal/82192 https://repositorio.unal.edu.co/
identifier_str_mv	Universidad Nacional de Colombia Repositorio Institucional Universidad Nacional de Colombia
dc.language.iso.spa.fl_str_mv	eng
language	eng
dc.relation.indexed.spa.fl_str_mv	RedCol LaReferencia
dc.relation.references.spa.fl_str_mv	Alarcón-Pardo, H. (1969). Contribución al conocimiento de la morfología, ecología, comportamiento y distribución geográfica de Podocnemis vogli, Testudina (Pelomedusidae). In Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales (Vol. 13, pp. 303–326). Allendorf, F. W., Hohenlohe, P. A., & Luikart, G. (2010). Genomics and the future of conservation genetics. Nature Reviews Genetics, 11(10), 697–709. https://doi.org/10.1038/nrg2844 Arroyave Bermudez, F. J., Romero Goyeneche, O. Y., Bonilla Gómez, M. A., & Hurtado Heredia, R. G. (2014). Illegal trade of tortoises (Testudinata) in Colombia: A network analysis approach. Acta Biologica Colombiana, 19(3), 381–392. https://doi.org/10.15446/abc.v19n3.41590 Asociación Colombiana de Herpetología (ACHerpetología). (2011). Plan estratégico de conservación para las tortugas continentales colombianas. Medellín, Colombia, 5–11. Attard, C. R. M., Möller, L. M., Sasaki, M., Hammer, M. P., Bice, C. M., Brauer, C. J., Carvalho, D. C., Harris, J. O., & Beheregaray, L. B. (2016). A novel holistic framework for genetic-based captive-breeding and reintroduction programs. Conservation Biology : The Journal of the Society for Conservation Biology, 30(5), 1060–1069. https://doi.org/10.1111/cobi.12699 Beheregaray, L. B., Ciofi, C., Caccone, A., Gibbs, J. P., & Powell, J. R. (2003). Genetic divergence, phylogeography and conservation units of giant tortoises from Santa Cruz and Pinzón, Galápagos Islands. Conservation Genetics, 4(1), 31–46. https://doi.org/10.1023/A:1021864214375 Bennett, A. M., Keevil, M., & Litzgus, J. D. (2010). Spatial ecology and population genetics of northern map turtles (Graptemys geographica) in fragmented and continuous habitats in Canada. Chelonian Conservation and Biology, 9(2), 185–195. https://doi.org/10.2744/CCB-0824.1 Bohonak, A. J. (2004). IBD (Isolation By Distance): A Program for Population Genetic Analyses of Isolation by Distance. Journal of Heredity, 93(March), 153–154. Bonin, A., Bellemain, E., Eidesen, P. B., Pompanon, F., Brochmann, C., & Taberlet, P. (2004). How to track and assess genotyping errors in population genetics studies. Molecular Ecology, 13(11), 3261–3273. https://doi.org/10.1111/j.1365-294X.2004.02346.x Castilla, A. M., Fernández-Pedrosa, V., Backeljau, T., González, A., Latorre, A., & Moya, A. (1998). Conservation genetics of insular Podarcis lizards using partial cytochrome b sequences. Molecular Ecology, 7(10), 1407–1411. https://doi.org/10.1046/j.1365-294x.1998.00443.x Chapuis, M. P., & Estoup, A. (2007). Microsatellite null alleles and estimation of population differentiation. Molecular Biology and Evolution, 24(3), 621–631. https://doi.org/10.1093/molbev/msl191 CIAT, & CORMACARENA. (2017). Plan regional de cambio climático para la Orinoquía. 438, 156. https://repository.ucatolica.edu.co/bitstream/10983/1795/3/ARTICULO.pdf Clement, M., Posada, D., & Crandall, K. A. (2000). TCS: A computer program to estimate gene genealogies. Molecular Ecology, 9(10), 1657–1659. https://doi.org/10.1046/j.1365-294X.2000.01020.x Cornuet, J. M., & Luikart, G. (1996). Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144(4), 2001–2014. https://doi.org/10.1093/genetics/144.4.2001 Dakin, E. E., & Avise, J. C. (2004). Microsatellite null alleles in parentage analysis. Heredity, 93(5), 504–509. https://doi.org/10.1038/sj.hdy.6800545 Davy, C. M., Leifso, A. E., Conflitti, I. M., & Murphy, R. W. (2012). Characterization of 10 novel microsatellite loci and cross-amplification of two loci in the snapping turtle (Chelydra serpentina). Conservation Genetics Resources, 4(3), 695–698. https://doi.org/10.1007/s12686-012-9624-7 Echelle, A. A., Hackler, J. C., Lack, J. B., Ballard, S. R., Roman, J., Fox, S. F., Leslie, D. M., & Van Den Bussche, R. A. (2010). Conservation genetics of the alligator snapping turtle: Cytonuclear evidence of range-wide bottleneck effects and unusually pronounced geographic structure. Conservation Genetics, 11(4), 1375–1387. https://doi.org/10.1007/s10592-009-9966-1 Ellegren, H., & Galtier, N. (2016). Determinants of genetic diversity. Nature Reviews Genetics, 17(7), 422–433. https://doi.org/10.1038/nrg.2016.58 Engstrom, T. N., Edwards, T., Osentoski, M. F., & Myers, E. M. (2007). Defining Turtle Diversity. In Chelonian Research Monographs (Vol. 4, Issue 4). http://www.csuchico.edu/biol/personnel/ Escalona, T., Engstrom, T. N., Hernandez, O. E., Bock, B. C., Vogt, R. C., & Valenzuela, N. (2009). Population genetics of the endangered South American freshwater turtle, Podocnemis unifilis, inferred from microsatellite DNA data. Conservation Genetics, 10(6), 1683–1696. https://doi.org/10.1007/s10592-008-9746-3 Excoffier, L., Laval, G., & Schneider, S. (2005). Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evolutionary Bioinformatics, 1, 117693430500100. https://doi.org/10.1177/117693430500100003 Excoffier, L., Smouse, P. E., & Quattro, J. M. (1992). Analysis of Molecular Variance Inferred From Metric Distances Among DNA Haplotypes: Application to Human Mitochondrial DNA Restriction Data. Genetics, 131, 479–491. https://doi.org/10.3354/meps198283 Fantin, C., Carvalho, C. F., Hrbek, T., Sites, J. W., Monjeló, L. A. S., Astolfi-Filho, S., & Farias, I. P. (2007). Microsatellite DNA markers for Podocnemis unifilis, the endangered yellow-spotted Amazon River turtle. Molecular Ecology Notes, 7(6), 1235–1238. https://doi.org/10.1111/j.1471-8286.2007.01842.x Ferrière, U., Dieckmann, U., & Couvet, D. (2004). Evolutionary Conservation Biology. In Evolutionary Conservation Biology. https://doi.org/10.1017/cbo9780511542022 Fienieg, E., & Galbusera, P. (2013). The use and integration of molecular DNA information in conservation breeding programmes: a review. Journal of Zoo and Aquarium Research, 1(2), 44–51. http://www.jzar.org/jzar/article/view/31 Forero-Medina, G., Yusti-Muñoz, A. P., & Castaño-Mora, O. V. (2014). Distribución geográfica de las tortugas continentales de Colombia y su representación en áreas protegidas. Acta Biologica Colombiana, 19(3), 405–416. Frankham, R. (2010). Where are we in conservation genetics and where do we need to go? Conservation Genetics, 11(2), 661–663. https://doi.org/10.1007/s10592-009-0010-2 Frankham, R. (2015). Genetic rescue of small inbred populations: meta-analysis reveals large and consistent benefits of gene flow. Molecular Ecology, 24(11), 2610–2618. https://doi.org/10.1111/mec.13139 Fritz, U., Auer, M., Bertolero, A., Cheylan, M., Fattizzo, T., Hundsdörfer, A. K., Martín Sampayo, M., Pretus, J. L., Široký, P., & Wink, M. (2006). A rangewide phylogeography of Hermann’s tortoise, Testudo hermanni (Reptilia: Testudines: Testudinidae): Implications for taxonomy. Zoologica Scripta, 35(5), 531–543. https://doi.org/10.1111/j.1463-6409.2006.00242.x Gaffney, E. S., Meylan, P. A., Wood, R. C., Simons, E., & De Almeida Campos, D. (2011). Evolution of the side-necked turtles: The Family podocnemididae. Bulletin of the American Museum of Natural History, 350, 1–237. https://doi.org/10.1206/350.1 González, E. G. (2003). Microsatélites: sus aplicaciones en la conservación de la biodiversidad. Graellsia, 59(2–3), 377–388. https://doi.org/10.3989/graellsia.2003.v59.i2-3.253 Goudet, J. (2001). FSTAT, a Program to Estimate and Test Gene Diversities and Fixation Indices, Version 2.9.3. https://www2.unil.ch/popgen/softwares/fstat.htm Green, M. R., & Sambrook, J. (2017). Isolation of high-molecular-weight DNA using organic solvents. Cold Spring Harbor Protocols, 2017(4), 356–359. https://doi.org/10.1101/pdb.prot093450 Guo, S. W., & Thompson, E. A. (1992). Performing the Exact Test of Hardy-Weinberg Proportion for Multiple Alleles. Biometrics, 48(2), 361. https://doi.org/10.2307/2532296 Hauswaldt, J. S., & Glenn, T. C. (2005). Population genetics of the diamondback terrapin (Malaclemys terrapin). Molecular Ecology, 14(3), 723–732. https://doi.org/10.1111/j.1365-294X.2005.02451.x Holderegger, R., Kamm, U., & Gugerli, F. (2006). Adaptive vs. neutral genetic diversity: Implications for landscape genetics. Landscape Ecology, 21(6), 797–807. https://doi.org/10.1007/s10980-005-5245-9 Hubisz, M. J., Falush, D., Stephens, M., & Pritchard, J. K. (2009). Inferring weak population structure with the assistance of sample group information - HUBISZ - 2009 - Molecular Ecology Resources - Wiley Online Library. Molecular Ecology Resources, 9(5), 1322–1332. http://onlinelibrary.wiley.com/doi/10.1111/j.1755-0998.2009.02591.x/full Humboldt, I. A. Von. (2021). Nuevos datos sobre la tortuga sabanera o galápago llanero, un reptil único de la Orinoquia colombo-venezolana. Boletin de Prensa Del Instituto Humboldt. http://www.humboldt.org.co/es/boletines-y-comunicados/item/1668-nuevos-datos-sobre-la-tortuga-sabanera-o-galapago-llanero-un-reptil-unico-de-la-orinoquia-colombo-venezolana IUCN. (2021). The IUCN Red List of Threatened Species. Version 2021-1. https://www.iucnredlist.org/ Jombart, T., & Collins, C. (2017). A tutorial for Discriminant Analysis of Principal Components (DAPC) using adegenet 1.3-4 (pp. 1–43). Kantartzi, S. (2013). Microsatellites : methods and protocols / edited by Stella K. Kantartzi. King, T. L., & Julian, S. E. (2004). Conservation of microsatellite DNA flanking sequence across 13 Emydid genera assayed with novel bog turtle (Glyptemys muhlenbergii) loci. Conservation Genetics, 5(5), 719–725. https://doi.org/10.1007/s10592-004-1854-0 Kosman, E., & Jokela, J. (2019). Dissimilarity of individual microsatellite profiles under different mutation models: Empirical approach. Ecology and Evolution, 9(7), 4038–4054. https://doi.org/10.1002/ece3.5032 Kuo, C. H., & Janzen, F. J. (2004). Genetic effects of a persistent bottleneck on a natural population of ornate box turtles (Terrapene ornata). Conservation Genetics, 5(4), 425–437. https://doi.org/10.1023/B:COGE.0000041020.54140.45 Lee, S., & Lee, D. K. (2018). What is the proper way to apply the multiple comparison test? Korean Journal of Anesthesiology, 71(5), 353–360. https://doi.org/10.4097/kja.d.18.00242 Li, C., Fraser, N. C., Rieppel, O., & Wu, X. C. (2018). A Triassic stem turtle with an edentulous beak. Nature, 560(7719), 476–479. https://doi.org/10.1038/s41586-018-0419-1 Li, Korol, A. B., Fahima, T., Beiles, A., & Nevo, E. (2002). Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Molecular E, 11(12), 2453–2465. Librado, P., & Rozas, J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25(11), 1451–1452. https://doi.org/10.1093/bioinformatics/btp187 Lovich, J. E., Ennen, J. R., Agha, M., & Whitfield Gibbons, J. (2018). Where have all the turtles gone, and why does it matter? BioScience, 68(10), 771–781. https://doi.org/10.1093/biosci/biy095 Mace, G. M., Gittleman, J. L., & Purvis, A. (2003). Preserving the tree of life. Science, 300(5626), 1707–1709. https://doi.org/10.1126/science.1085510 Mancera Rodríguez, N., & Reyes García, O. (2008). Wildlife Trade in Colombia. Wildlife Trade in Colombia, 61(2), 4618–4645 Manel, S., Schwartz, M. K., Luikart, G., & Taberlet, P. (2003). Landscape genetics: Combining landscape ecology and population genetics. Trends in Ecology and Evolution, 18(4), 189–197. https://doi.org/10.1016/S0169-5347(03)00008-9 May, R. M. (1990). Taxonomy as destiny. Nature, 347(6289), 129–130. https://doi.org/10.1038/347129a0 Ministerio de Ambiente y Ambiente Sostenible, C. (2012). Tortugas terrestres y de agua dulce de Colombia y manejo de los decomisos; Universidad Nacional de Colombia (M. A. Bonilla, N. Luque, M. A. Cuervo, M. Pinzón, & E. A. Vásquez (eds.)). Mockford, S. W., McEachern, L., Herman, T. B., Snyder, M., & Wright, J. M. (2005). Population genetic structure of a disjunct population of Blanding’s turtle (Emydoidea blandingii) in Nova Scotia, Canada. Biological Conservation, 123(3), 373–380. https://doi.org/10.1016/j.biocon.2004.11.021 Morales-Betancourt, M. A., Lasso, C. A., Páez, V. P., & Bock, B. C. (2015). Libro Rojo de Reptiles de Colombia. Morales-Betancourt, M. A., Páez., V. P., & Lasso, C. (2015). Conservación de las tortugas continentales de Colombia: evaluación 2012-2013 y propuesta 2015-2020. Instituto de Investigación de Recursos Bioló- Gicos Alexander von Humboldt, Asociación Colombiana de Herpetología y Ministerio de Ambiente y Desarrollo Sostenible, 28. Mueller, J. C. (2004). Linkage disequilibrium for different scales and applications. Briefings in Bioinformatics, 5(4), 355–364. https://doi.org/10.1093/bib/5.4.355 Ortiz Moreno, M. L., & Rodríguez Pulido, J. A. (2017). Estado del conocimiento y amenazas de la tortuga sabanera ( Podocnemis vogli, Podocnemididae) en Colombia TT - Knowledge and threat status of savanna side-necked turtle (Podocnemis vogli, Podocnemididae) in Colombia TT - Estado do conhecimento e ameaças. Orinoquia, 21(1), 26–33. http://www.scielo.org.co/scielo.php?script=sci_arttext&pid=S0121-37092017000100026&lang=es%0Ahttp://www.scielo.org.co/pdf/rori/v21n1/0121-3709-rori-21-01-00026.pdf Ouborg, N. J., Pertoldi, C., Loeschcke, V., Bijlsma, R. K., & Hedrick, P. W. (2010). Conservation genetics in transition to conservation genomics. Trends in Genetics, 26(4), 177–187. https://doi.org/10.1016/j.tig.2010.01.001 Páez, V. P., Morales-Betancourt, M. A., Lasso, C. A., Castaño-Mora, O. V., & Bock, B. C. (2012a). V. Biología y conservación de las tortugas continentales de Colombia. In V. Biología y conservación de las tortugas continentales de Colombia (Issue December). Páez, V. P., Morales-Betancourt, M. A., Lasso, C. A., Castaño-Mora, O. V., & Bock, B. C. (2012b). V. Biología y conservación de las tortugas continentales de Colombia. In M. A. M.-B. Páez V. P. & O. V. C.-M. y B. C. B. C. A. Lasso (Eds.), V. Biología y conservación de las tortugas continentales de Colombia (Issue December). Patwardhan, A., Roy, A., & Ray, S. (2014). Molecular Markers in Phylogenetic Studies-A Review. Journal of Phylogenetics & Evolutionary Biology, 02(02). https://doi.org/10.4172/2329-9002.1000131 Peakall, R., & Smouse, P. E. (2012). GenALEx 6.5: Genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics, 28(19), 2537–2539. https://doi.org/10.1093/bioinformatics/bts460 Pearse, D. E., Arndt, A. D., Valenzuela, N., Miller, B. A., Cantarelli, V., & Sites, J. W. (2006). Estimating population structure under nonequilibrium conditions in a conservation context: Continent-wide population genetics of the giant Amazon river turtle, Podocnemis expansa (Chelonia; Podocnemididae). Molecular Ecology, 15(4), 985–1006. https://doi.org/10.1111/j.1365-294X.2006.02869.x Pedall, I., Fritz, U., Stuckas, H., Valdeón, A., & Wink, M. (2011). Gene flow across secondary contact zones of the Emys orbicularis complex in the Western Mediterranean and evidence for extinction and re-introduction of pond turtles on Corsica and Sardinia (Testudines: Emydidae). Journal of Zoological Systematics and Evolutionary Research, 49(1), 44–57. https://doi.org/10.1111/j.1439-0469.2010.00572.x Pinzón Arias, M., Dúran-Prieto, C., Izquierdo, E., & Chaves-Hernández, P. (2017). Aves y tortugas estudiadas en el Oleoducto de los Llanos Orientales Piry, S., Luikart, G., & Cornuet, J. M. (1999). BOTTLENECK: A computer program for detecting recent reductions in the effective population size using allele frequency data. Journal of Heredity, 90(4), 502–503. https://doi.org/10.1093/jhered/90.4.502 Pompanon, F., Bonin, A., Bellemain, E., & Taberlet, P. (2005). Genotyping errors: Causes, consequences and solutions. Nature Reviews Genetics, 6(11), 847–859. https://doi.org/10.1038/nrg1707 Pritchard, J. K., Stephens, M., & Donnelly, P. (2000). Interspecific of Population Structure Using Multilocus Genotype Data. Genet, 155, 945–959. https://doi.org/10.1007/s10681-008-9788-0 Puechmaille, S. J. (2016). The program structure does not reliably recover the correct population structure when sampling is uneven: Subsampling and new estimators alleviate the problem. Molecular Ecology Resources, 16(3), 608–627. https://doi.org/10.1111/1755-0998.12512 Ramo, C. (1982). Biología del galápago (Podocnemis vogli, Müller 1935) en el Hato El Frio, llanos de Apure, Venezuela. Donana, Acta Vertebr., 3, 1–16 Raymond, M., & Rousset, F. (1995). Genpop 1.2 Population genetics software for exact test and ecumenicism. Computer Notes, 248–249 Rhodin, A. G. J., Iverson, J. B., Bour, R., Fritz, U., Georges, A., Shaffer, H. B., & van Dijk, P. P. (2021). Turtles of the World: Annotated Checklist and Atlas of Taxonomy, Synonymy, Distribution, and Conservation Status (9th Ed.). In Chelonian Research Monographs. https://doi.org/doi:10.3854/crm.8.checklist. atlas.v9.2021 Rhodin, A. G. J., Stanford, C. B., Dijk, P. P. Van, Eisemberg, C., Luiselli, L., Mittermeier, R. A., Hudson, R., Horne, B. D., Goode, E. V., Kuchling, G., Walde, A., Baard, E. H. W., Berry, K. H., Bertolero, A., Blanck, T. E. G., Bour, R., Buhlmann, K. A., Cayot, L. J., Collett, S., … Vogt, R. C. (2018). Global Conservation Status of Turtles and Tortoises (Order Testudines). Chelonian Conservation and Biology, 17(2), 135–161. https://doi.org/10.2744/CCB-1348.1 Rueda-Almonacid, J. V., Carr, J. L., Mittermeier, R. A., Rodríguez-Mahecha, J. V, Mast, R. B., Vogt, R. C., Rhodin, A. G. J., de la Ossa-Velásquez, J., Rueda, N., & Mittelbach, C. G. (2007). Las tortugas y los crocodilianos de los paises andinos del trópico. In Las tortugas y los cocodrilianos de los países andinos del trópico. Serie de guías tropicales de campo No 6. https://scholar.google.com/scholar?oi=gsb85&q=Las tortugas y los cocodrilianos%0Ade los países andinos del%0Atrópico&lookup=0&hl=es#1 Selkoe, K. A., & Toonen, R. J. (2006). Microsatellites for ecologists: A practical guide to using and evaluating microsatellite markers. Ecology Letters, 9(5), 615–629. https://doi.org/10.1111/j.1461-0248.2006.00889.x Sepúlveda Seguro, A. M. (2018). Acercamiento a las características demográficas y de uso del hábitat de la tortuga galápaga Podocnemis vogli (Testudines, Podocnemididae), en la Reserva Natural Privada Bojonawi (Vichada, Colombia) durante la estación seca. Universidad de Antioquia, 1, 1–15. https://doi.org/10.3109/08830185.2014.902452%0Ahttps://www.bertelsmann-stiftung.de/fileadmin/files/BSt/Publikationen/GrauePublikationen/MT_Globalization_Report_2018.pdf%0Ahttp://eprints.lse.ac.uk/43447/1/India_globalisation%2C society and inequalities%28l SIB-Colombia, C. (2020). Biodiversidad en Cifras: Número de especies de reptiles registrados en el SiB Colombia. https://cifras.biodiversidad.co/ Sites Jr., J. W., Fitzsimmons, N. N., Silva Jr., N. J. Da, & Cantarelli, V. H. (1999). Conservation genetics of the giant Amazon river turtle (Podocnemis expansa; Pelomedusidae) - Inferences from two classes of molecular markers. In Chelonian Conservation and Biology (Vol. 3, Issue 3, pp. 454–463). Spinks, P. Q., Shaffer, H. B., Iverson, J. B., & McCord, W. P. (2004). Phylogenetic hypotheses for the turtle family Geoemydidae. Molecular Phylogenetics and Evolution, 32(1), 164–182. https://doi.org/10.1016/j.ympev.2003.12.015 Stanford, C. B., Iverson, J. B., Rhodin, A. G. J., Paul van Dijk, P., Mittermeier, R. A., Kuchling, G., Berry, K. H., Bertolero, A., Bjorndal, K. A., Blanck, T. E. G., Buhlmann, K. A., Burke, R. L., Congdon, J. D., Diagne, T., Edwards, T., Eisemberg, C. C., Ennen, J. R., Forero-Medina, G., Frankel, M., … Walde, A. D. (2020). Turtles and Tortoises Are in Trouble. Current Biology, 30(12), R721–R735. https://doi.org/10.1016/j.cub.2020.04.088 SuVersión. (2017). Hoy se realiza una nueva liberación de tortugas galápaga. https://suversion.com.co/home/hoy-se-realiza-una-nueva-liberacion-de-tortugas-galapaga/ Taberlet, P., Waits, L. P., & Luikart, G. (1999). Noninvasive genetic sampling: look before you leap. TREE, 14(8), 323–327. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28(10), 2731–2739. https://doi.org/10.1093/molbev/msr121 Trujillo, F., Portocarrero, M., & Gómez, C. (2008). Plan de Manejo y Conservación de Especies Amenazadas en la Reserva de Biósfera El Tuparro: Delfines de río, Manatíes, Nutrias, Jaguares y Tortugas del género Podocnemis. proyecto Pijiwi Orinoko (Fundación Omacha – Fundación Horizonte Verde. Valenzuela, N. (2000). Multiple paternity in side-neck turtles Podocnemis expansa: Evidence from microsatellite DNA data. Molecular Ecology, 9(1), 99–105. https://doi.org/10.1046/j.1365-294X.2000.00806.x Vargas-Ramírez, M., Caballero, S., Morales-Betancourt, M. A., Lasso, C. A., Amaya, L., Martínez, J. G., das Neves Silva Viana, M., Vogt, R. C., Farias, I. P., Hrbek, T., Campbell, P. D., & Fritz, U. (2020). Genomic analyses reveal two species of the matamata (Testudines: Chelidae: Chelus spp.) and clarify their phylogeography. Molecular Phylogenetics and Evolution, 148(June 2019), 106823. https://doi.org/10.1016/j.ympev.2020.106823 https://doi.org/10.1016/j.ympev.2020.106823 Vargas-Ramí́rez, M., Castaño-Mora, O. V., & Fritz, U. (2008). Molecular phylogeny and divergence times of ancient South American and Malagasy River turtles (Testudines: Pleurodira: Podocnemididae). Organisms Diversity and Evolution, 8(5), 388–398. https://doi.org/10.1016/j.ode.2008.10.001 Vargas-Ramírez, M., del Valle, C., Ceballos, C. P., & Fritz, U. (2017). Trachemys medemi n. sp. from northwestern Colombia turns the biogeography of South American slider turtles upside down. Journal of Zoological Systematics and Evolutionary Research, 55(4), 326–339. https://doi.org/10.1111/jzs.12179 Vargas-Ramírez, M., Stuckas, H., Castaño-Mora, O. V., & Fritz, U. (2011). Extremely low genetic diversity and weak population differentiation in the endangered Colombian river turtle Podocnemis lewyana (Testudines: Podocnemididae). Conservation Genetics, 13(1), 65–77. https://doi.org/10.1007/s10592-011-0263-4 Velo-Antón, G., García-París, M., & Cordero Rivera, A. (2008). Patterns of nuclear and mitochondrial DNA variation in Iberian populations of Emys orbicularis (Emydidae): Conservation implications. Conservation Genetics, 9(5), 1263–1274. https://doi.org/10.1007/s10592-007-9457-1 Velo-Antón, G., García-París, M., & Cordero Rivera, A. (2008). Patterns of nuclear and mitochondrial DNA variation in Iberian populations of Emys orbicularis (Emydidae): Conservation implications. Conservation Genetics, 9(5), 1263–1274. https://doi.org/10.1007/s10592-007-9457-1 Violeta. (2020). 500 galápagas sabaneras son liberadas en Arauca. https://www.violetastereo.com/wp/500-galapagas-sabaneras-son-liberadas-en-arauca/ Waples, R. S., & Allendorf, F. (2015). Testing for hardy-weinberg proportions: Have we lost the plot? Journal of Heredity, 106(1), 1–19. https://doi.org/10.1093/jhered/esu062 Wilson, G. A., & Rannala, B. (2003). Bayesian inference of recent migration rates using multilocus genotypes. Genetics, 163(3), 1177–1191. https://doi.org/10.1093/genetics/163.3.1177
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spelling	Reconocimiento 4.0 Internacionalhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Vargas Ramírez, Mario Alfonso426887f873c177aad1974e58f21b6b5fCárdenas Barrantes, Diana Marcela266cfd02cf4af71301643b7e3f7caa64Biodiversidad y Conservación Genética2022-08-30T15:09:29Z2022-08-30T15:09:29Z2021-11https://repositorio.unal.edu.co/handle/unal/82192Universidad Nacional de ColombiaRepositorio Institucional Universidad Nacional de Colombiahttps://repositorio.unal.edu.co/ilustraciones, graficas, mapasThe Savannah side-necked turtle Podocnemis vogli turtle is a species restricted to the savannas of the Orinoco basin in Colombia and Venezuela. Its populations have decreased and disappeared in some places due to illegal exploitation, as well as modification and destruction of their habitat due to human activities. This species has not been evaluated globally by the International Union for Conservation of Nature (IUCN), but it is categorized as Least Concern (LC) at the regional level and is regulated under Appendix II of the CITES convention. To analyze their conservation status using molecular tools for the first time, 19 microsatellite loci were evaluated using the cross-amplification technique, as well as sequences of the mitochondrial gene (mtDNA) Cyt b in four populations located in Puerto Carreño (Vichada), Paz de Ariporo (Casanare), Puerto López (Meta), Unillanos (Villavicencio, Meta), San martin (Meta) and 26 individuals kept at the Roberto Franco Tropical Biology Station (EBTRF). The data obtained allowed us to analyze for the species its diversity and genetic structure, as well as population declines (bottlenecks) and gene flow. As a result, ten suitable polymorphic markers were identified to carry out the population genetics study. Those markers were useful to reveal a genetic structure composed of the five groups corresponding to the sampling locations, as well as to detect high levels of genetic diversity in them. These five populations correspond to four Independent Management Units (IMU sensu Moritz 1994). However, the analyzes also indicated the presence of recent bottlenecks in the populations located in Paz de Ariporo and Puerto Carreño, being evidence of a population decline most likely due to anthropic activities. Additionally, the five populations presented low and asymmetric genetic flow between them. Regarding the analysis of the sequence of Cyt b, the haplotype network revealed weak differentiation but with the presence of unique haplotypes in the populations located in Puerto Carreño, Paz de Ariporo, EBTRF, a genbank sequence from San Martín and a shared haplotype identified in Puerto López, Puerto Carreño, Paz de Ariporo, Unillanos and the EBTRF. The results of this research allow us to propose management and conservation guidelines for these populations in Colombia.La tortuga Sabanera Podocnemis vogli es una especie restringida a las sábanas de la cuenca del Orinoco en Colombia y Venezuela. Sus poblaciones han disminuido y desaparecido en algunos lugares debido a la explotación ilegal y la alteración y destrucción de su hábitat a causa de actividades humanas. Esta especie no ha sido evaluada a nivel global por la Unión Internacional para la Conservación de la Naturaleza (IUCN), pero se encuentra categorizada en preocupación menor (LC) a nivel regional y está regulada bajo el apéndice II de la convención CITES. Con el objetivo de analizar su estado de conservación usando herramientas moleculares por primera vez, se evaluaron 19 loci de microsatélites mediante la técnica de amplificación cruzada, así como secuencias del gen mitocondrial (mtADN) Cyt b, en cinco poblaciones localizadas en Puerto Carreño (Vichada), Paz de Ariporo (Casanare), Puerto López (Meta), Unillanos (Villavicencio, Meta), San Martin (Meta) and 26 individuos mantenidos en cautiverio en la Estación de Biología Tropical Roberto Franco (EBTRF). Los datos obtenidos permitieron analizar para la especie su diversidad y estructura genética, así como declives poblacionales (bottlenecks) y flujo genético. Como resultado, se identificaron diez marcadores polimórficos adecuados para llevar a cabo el estudio de genética de poblaciones, los cuales fueron útiles para revelar una estructura genética compuesta por los cinco grupos correspondientes a las localidades de muestreo. Estos grupos genéticos poblaciones corresponden a Unidades de Manejo Independiente (IMU sensu Moritz 1994). Sin embargo, los análisis indicaron presencia de cuellos de botella recientes en las poblaciones localizadas en Paz de Ariporo y Puerto Carreño, siendo evidencia de disminución poblacional debido muy probablemente a actividades antrópicas. Adicionalmente, estas poblaciones presentaron flujo genético bajo y asimétrico entre ellos, con un flujo mayor hacia Paz de Ariporo desde las otras poblaciones genéticas a causa posiblemente de actividades antrópicas. Con respecto al análisis de la secuencia parcial del Cyt b, la red de haplotipos revelo una diferenciación débil, pero con presencia de haplotipos únicos en las poblaciones localizadas en Puerto Carreño, Paz de Ariporo, EBTRF y una secuencia de genbank proveniente de San Martín (Meta) y un haplotipo compartido identificado en Puerto López, Puerto Carreño, Paz de Ariporo, Unillanos y la EBTRF. Los resultados de esta investigación nos permiten proponer lineamientos de manejo y conservación para estas poblaciones en Colombia. (Texto tomado de la fuente)MaestríaMagíster en Ciencias - Biologíaxiii, 48 páginasapplication/pdfengUniversidad Nacional de ColombiaBogotá - Ciencias - Maestría en Ciencias - BiologíaDepartamento de BiologíaFacultad de CienciasBogotá, ColombiaUniversidad Nacional de Colombia - Sede Bogotá590 - Animales::597 - Vertebrados de sangre fríaConservationMicrosatellitesCyt bGenetic diversityGene flowCross-amplification testConservación genéticaMicrosatélitesVariabilidad genéticaFlujo génicoAmplificación cruzadaDiversity and gene flow in four Colombian turtle populations of Podocnemis vogli (Testudines: Podocnemididae)Diversidad y flujo genético en cuatro poblaciones colombianas de la tortuga Podocnemis vogli (Testudines: Podocnemididae)Trabajo de grado - Maestríainfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/acceptedVersionTexthttp://purl.org/redcol/resource_type/TMRedColLaReferenciaAlarcón-Pardo, H. (1969). Contribución al conocimiento de la morfología, ecología, comportamiento y distribución geográfica de Podocnemis vogli, Testudina (Pelomedusidae). In Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales (Vol. 13, pp. 303–326).Allendorf, F. W., Hohenlohe, P. A., & Luikart, G. (2010). Genomics and the future of conservation genetics. Nature Reviews Genetics, 11(10), 697–709. https://doi.org/10.1038/nrg2844Arroyave Bermudez, F. J., Romero Goyeneche, O. Y., Bonilla Gómez, M. A., & Hurtado Heredia, R. G. (2014). Illegal trade of tortoises (Testudinata) in Colombia: A network analysis approach. Acta Biologica Colombiana, 19(3), 381–392. https://doi.org/10.15446/abc.v19n3.41590Asociación Colombiana de Herpetología (ACHerpetología). (2011). Plan estratégico de conservación para las tortugas continentales colombianas. Medellín, Colombia, 5–11.Attard, C. R. M., Möller, L. M., Sasaki, M., Hammer, M. P., Bice, C. M., Brauer, C. J., Carvalho, D. C., Harris, J. O., & Beheregaray, L. B. (2016). A novel holistic framework for genetic-based captive-breeding and reintroduction programs. Conservation Biology : The Journal of the Society for Conservation Biology, 30(5), 1060–1069. https://doi.org/10.1111/cobi.12699Beheregaray, L. B., Ciofi, C., Caccone, A., Gibbs, J. P., & Powell, J. R. (2003). Genetic divergence, phylogeography and conservation units of giant tortoises from Santa Cruz and Pinzón, Galápagos Islands. Conservation Genetics, 4(1), 31–46. https://doi.org/10.1023/A:1021864214375Bennett, A. M., Keevil, M., & Litzgus, J. D. (2010). Spatial ecology and population genetics of northern map turtles (Graptemys geographica) in fragmented and continuous habitats in Canada. Chelonian Conservation and Biology, 9(2), 185–195. https://doi.org/10.2744/CCB-0824.1Bohonak, A. J. (2004). IBD (Isolation By Distance): A Program for Population Genetic Analyses of Isolation by Distance. Journal of Heredity, 93(March), 153–154.Bonin, A., Bellemain, E., Eidesen, P. B., Pompanon, F., Brochmann, C., & Taberlet, P. (2004). How to track and assess genotyping errors in population genetics studies. Molecular Ecology, 13(11), 3261–3273. https://doi.org/10.1111/j.1365-294X.2004.02346.xCastilla, A. M., Fernández-Pedrosa, V., Backeljau, T., González, A., Latorre, A., & Moya, A. (1998). Conservation genetics of insular Podarcis lizards using partial cytochrome b sequences. Molecular Ecology, 7(10), 1407–1411. https://doi.org/10.1046/j.1365-294x.1998.00443.xChapuis, M. P., & Estoup, A. (2007). Microsatellite null alleles and estimation of population differentiation. Molecular Biology and Evolution, 24(3), 621–631. https://doi.org/10.1093/molbev/msl191CIAT, & CORMACARENA. (2017). Plan regional de cambio climático para la Orinoquía. 438, 156. https://repository.ucatolica.edu.co/bitstream/10983/1795/3/ARTICULO.pdfClement, M., Posada, D., & Crandall, K. A. (2000). TCS: A computer program to estimate gene genealogies. Molecular Ecology, 9(10), 1657–1659. https://doi.org/10.1046/j.1365-294X.2000.01020.xCornuet, J. M., & Luikart, G. (1996). Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144(4), 2001–2014. https://doi.org/10.1093/genetics/144.4.2001Dakin, E. E., & Avise, J. C. (2004). Microsatellite null alleles in parentage analysis. Heredity, 93(5), 504–509. https://doi.org/10.1038/sj.hdy.6800545Davy, C. M., Leifso, A. E., Conflitti, I. M., & Murphy, R. W. (2012). Characterization of 10 novel microsatellite loci and cross-amplification of two loci in the snapping turtle (Chelydra serpentina). Conservation Genetics Resources, 4(3), 695–698. https://doi.org/10.1007/s12686-012-9624-7Echelle, A. A., Hackler, J. C., Lack, J. B., Ballard, S. R., Roman, J., Fox, S. F., Leslie, D. M., & Van Den Bussche, R. A. (2010). Conservation genetics of the alligator snapping turtle: Cytonuclear evidence of range-wide bottleneck effects and unusually pronounced geographic structure. Conservation Genetics, 11(4), 1375–1387. https://doi.org/10.1007/s10592-009-9966-1Ellegren, H., & Galtier, N. (2016). Determinants of genetic diversity. Nature Reviews Genetics, 17(7), 422–433. https://doi.org/10.1038/nrg.2016.58Engstrom, T. N., Edwards, T., Osentoski, M. F., & Myers, E. M. (2007). Defining Turtle Diversity. In Chelonian Research Monographs (Vol. 4, Issue 4). http://www.csuchico.edu/biol/personnel/Escalona, T., Engstrom, T. N., Hernandez, O. E., Bock, B. C., Vogt, R. C., & Valenzuela, N. (2009). Population genetics of the endangered South American freshwater turtle, Podocnemis unifilis, inferred from microsatellite DNA data. Conservation Genetics, 10(6), 1683–1696. https://doi.org/10.1007/s10592-008-9746-3Excoffier, L., Laval, G., & Schneider, S. (2005). Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evolutionary Bioinformatics, 1, 117693430500100. https://doi.org/10.1177/117693430500100003Excoffier, L., Smouse, P. E., & Quattro, J. M. (1992). Analysis of Molecular Variance Inferred From Metric Distances Among DNA Haplotypes: Application to Human Mitochondrial DNA Restriction Data. Genetics, 131, 479–491. https://doi.org/10.3354/meps198283Fantin, C., Carvalho, C. F., Hrbek, T., Sites, J. W., Monjeló, L. A. S., Astolfi-Filho, S., & Farias, I. P. (2007). Microsatellite DNA markers for Podocnemis unifilis, the endangered yellow-spotted Amazon River turtle. Molecular Ecology Notes, 7(6), 1235–1238. https://doi.org/10.1111/j.1471-8286.2007.01842.xFerrière, U., Dieckmann, U., & Couvet, D. (2004). Evolutionary Conservation Biology. In Evolutionary Conservation Biology. https://doi.org/10.1017/cbo9780511542022Fienieg, E., & Galbusera, P. (2013). The use and integration of molecular DNA information in conservation breeding programmes: a review. Journal of Zoo and Aquarium Research, 1(2), 44–51. http://www.jzar.org/jzar/article/view/31Forero-Medina, G., Yusti-Muñoz, A. P., & Castaño-Mora, O. V. (2014). Distribución geográfica de las tortugas continentales de Colombia y su representación en áreas protegidas. Acta Biologica Colombiana, 19(3), 405–416.Frankham, R. (2010). Where are we in conservation genetics and where do we need to go? Conservation Genetics, 11(2), 661–663. https://doi.org/10.1007/s10592-009-0010-2Frankham, R. (2015). Genetic rescue of small inbred populations: meta-analysis reveals large and consistent benefits of gene flow. Molecular Ecology, 24(11), 2610–2618. https://doi.org/10.1111/mec.13139Fritz, U., Auer, M., Bertolero, A., Cheylan, M., Fattizzo, T., Hundsdörfer, A. K., Martín Sampayo, M., Pretus, J. L., Široký, P., & Wink, M. (2006). A rangewide phylogeography of Hermann’s tortoise, Testudo hermanni (Reptilia: Testudines: Testudinidae): Implications for taxonomy. Zoologica Scripta, 35(5), 531–543. https://doi.org/10.1111/j.1463-6409.2006.00242.xGaffney, E. S., Meylan, P. A., Wood, R. C., Simons, E., & De Almeida Campos, D. (2011). Evolution of the side-necked turtles: The Family podocnemididae. Bulletin of the American Museum of Natural History, 350, 1–237. https://doi.org/10.1206/350.1González, E. G. (2003). Microsatélites: sus aplicaciones en la conservación de la biodiversidad. Graellsia, 59(2–3), 377–388. https://doi.org/10.3989/graellsia.2003.v59.i2-3.253Goudet, J. (2001). FSTAT, a Program to Estimate and Test Gene Diversities and Fixation Indices, Version 2.9.3. https://www2.unil.ch/popgen/softwares/fstat.htmGreen, M. R., & Sambrook, J. (2017). Isolation of high-molecular-weight DNA using organic solvents. Cold Spring Harbor Protocols, 2017(4), 356–359. https://doi.org/10.1101/pdb.prot093450Guo, S. W., & Thompson, E. A. (1992). Performing the Exact Test of Hardy-Weinberg Proportion for Multiple Alleles. Biometrics, 48(2), 361. https://doi.org/10.2307/2532296Hauswaldt, J. S., & Glenn, T. C. (2005). Population genetics of the diamondback terrapin (Malaclemys terrapin). Molecular Ecology, 14(3), 723–732. https://doi.org/10.1111/j.1365-294X.2005.02451.xHolderegger, R., Kamm, U., & Gugerli, F. (2006). Adaptive vs. neutral genetic diversity: Implications for landscape genetics. Landscape Ecology, 21(6), 797–807. https://doi.org/10.1007/s10980-005-5245-9Hubisz, M. J., Falush, D., Stephens, M., & Pritchard, J. K. (2009). Inferring weak population structure with the assistance of sample group information - HUBISZ - 2009 - Molecular Ecology Resources - Wiley Online Library. Molecular Ecology Resources, 9(5), 1322–1332. http://onlinelibrary.wiley.com/doi/10.1111/j.1755-0998.2009.02591.x/fullHumboldt, I. A. Von. (2021). Nuevos datos sobre la tortuga sabanera o galápago llanero, un reptil único de la Orinoquia colombo-venezolana. Boletin de Prensa Del Instituto Humboldt. http://www.humboldt.org.co/es/boletines-y-comunicados/item/1668-nuevos-datos-sobre-la-tortuga-sabanera-o-galapago-llanero-un-reptil-unico-de-la-orinoquia-colombo-venezolanaIUCN. (2021). The IUCN Red List of Threatened Species. Version 2021-1. https://www.iucnredlist.org/Jombart, T., & Collins, C. (2017). A tutorial for Discriminant Analysis of Principal Components (DAPC) using adegenet 1.3-4 (pp. 1–43).Kantartzi, S. (2013). Microsatellites : methods and protocols / edited by Stella K. Kantartzi.King, T. L., & Julian, S. E. (2004). Conservation of microsatellite DNA flanking sequence across 13 Emydid genera assayed with novel bog turtle (Glyptemys muhlenbergii) loci. Conservation Genetics, 5(5), 719–725. https://doi.org/10.1007/s10592-004-1854-0Kosman, E., & Jokela, J. (2019). Dissimilarity of individual microsatellite profiles under different mutation models: Empirical approach. Ecology and Evolution, 9(7), 4038–4054. https://doi.org/10.1002/ece3.5032Kuo, C. H., & Janzen, F. J. (2004). Genetic effects of a persistent bottleneck on a natural population of ornate box turtles (Terrapene ornata). Conservation Genetics, 5(4), 425–437. https://doi.org/10.1023/B:COGE.0000041020.54140.45Lee, S., & Lee, D. K. (2018). What is the proper way to apply the multiple comparison test? Korean Journal of Anesthesiology, 71(5), 353–360. https://doi.org/10.4097/kja.d.18.00242Li, C., Fraser, N. C., Rieppel, O., & Wu, X. C. (2018). A Triassic stem turtle with an edentulous beak. Nature, 560(7719), 476–479. https://doi.org/10.1038/s41586-018-0419-1Li, Korol, A. B., Fahima, T., Beiles, A., & Nevo, E. (2002). Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Molecular E, 11(12), 2453–2465.Librado, P., & Rozas, J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25(11), 1451–1452. https://doi.org/10.1093/bioinformatics/btp187Lovich, J. E., Ennen, J. R., Agha, M., & Whitfield Gibbons, J. (2018). Where have all the turtles gone, and why does it matter? BioScience, 68(10), 771–781. https://doi.org/10.1093/biosci/biy095Mace, G. M., Gittleman, J. L., & Purvis, A. (2003). Preserving the tree of life. Science, 300(5626), 1707–1709. https://doi.org/10.1126/science.1085510Mancera Rodríguez, N., & Reyes García, O. (2008). Wildlife Trade in Colombia. Wildlife Trade in Colombia, 61(2), 4618–4645Manel, S., Schwartz, M. K., Luikart, G., & Taberlet, P. (2003). Landscape genetics: Combining landscape ecology and population genetics. Trends in Ecology and Evolution, 18(4), 189–197. https://doi.org/10.1016/S0169-5347(03)00008-9May, R. M. (1990). Taxonomy as destiny. Nature, 347(6289), 129–130. https://doi.org/10.1038/347129a0Ministerio de Ambiente y Ambiente Sostenible, C. (2012). Tortugas terrestres y de agua dulce de Colombia y manejo de los decomisos; Universidad Nacional de Colombia (M. A. Bonilla, N. Luque, M. A. Cuervo, M. Pinzón, & E. A. Vásquez (eds.)).Mockford, S. W., McEachern, L., Herman, T. B., Snyder, M., & Wright, J. M. (2005). Population genetic structure of a disjunct population of Blanding’s turtle (Emydoidea blandingii) in Nova Scotia, Canada. Biological Conservation, 123(3), 373–380. https://doi.org/10.1016/j.biocon.2004.11.021Morales-Betancourt, M. A., Lasso, C. A., Páez, V. P., & Bock, B. C. (2015). Libro Rojo de Reptiles de Colombia.Morales-Betancourt, M. A., Páez., V. P., & Lasso, C. (2015). Conservación de las tortugas continentales de Colombia: evaluación 2012-2013 y propuesta 2015-2020. Instituto de Investigación de Recursos Bioló- Gicos Alexander von Humboldt, Asociación Colombiana de Herpetología y Ministerio de Ambiente y Desarrollo Sostenible, 28.Mueller, J. C. (2004). Linkage disequilibrium for different scales and applications. Briefings in Bioinformatics, 5(4), 355–364. https://doi.org/10.1093/bib/5.4.355Ortiz Moreno, M. L., & Rodríguez Pulido, J. A. (2017). Estado del conocimiento y amenazas de la tortuga sabanera ( Podocnemis vogli, Podocnemididae) en Colombia TT - Knowledge and threat status of savanna side-necked turtle (Podocnemis vogli, Podocnemididae) in Colombia TT - Estado do conhecimento e ameaças. Orinoquia, 21(1), 26–33. http://www.scielo.org.co/scielo.php?script=sci_arttext&pid=S0121-37092017000100026&lang=es%0Ahttp://www.scielo.org.co/pdf/rori/v21n1/0121-3709-rori-21-01-00026.pdfOuborg, N. J., Pertoldi, C., Loeschcke, V., Bijlsma, R. K., & Hedrick, P. W. (2010). Conservation genetics in transition to conservation genomics. Trends in Genetics, 26(4), 177–187. https://doi.org/10.1016/j.tig.2010.01.001Páez, V. P., Morales-Betancourt, M. A., Lasso, C. A., Castaño-Mora, O. V., & Bock, B. C. (2012a). V. Biología y conservación de las tortugas continentales de Colombia. In V. Biología y conservación de las tortugas continentales de Colombia (Issue December).Páez, V. P., Morales-Betancourt, M. A., Lasso, C. A., Castaño-Mora, O. V., & Bock, B. C. (2012b). V. Biología y conservación de las tortugas continentales de Colombia. In M. A. M.-B. Páez V. P. & O. V. C.-M. y B. C. B. C. A. Lasso (Eds.), V. Biología y conservación de las tortugas continentales de Colombia (Issue December).Patwardhan, A., Roy, A., & Ray, S. (2014). Molecular Markers in Phylogenetic Studies-A Review. Journal of Phylogenetics & Evolutionary Biology, 02(02). https://doi.org/10.4172/2329-9002.1000131Peakall, R., & Smouse, P. E. (2012). GenALEx 6.5: Genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics, 28(19), 2537–2539. https://doi.org/10.1093/bioinformatics/bts460Pearse, D. E., Arndt, A. D., Valenzuela, N., Miller, B. A., Cantarelli, V., & Sites, J. W. (2006). Estimating population structure under nonequilibrium conditions in a conservation context: Continent-wide population genetics of the giant Amazon river turtle, Podocnemis expansa (Chelonia; Podocnemididae). Molecular Ecology, 15(4), 985–1006. https://doi.org/10.1111/j.1365-294X.2006.02869.xPedall, I., Fritz, U., Stuckas, H., Valdeón, A., & Wink, M. (2011). Gene flow across secondary contact zones of the Emys orbicularis complex in the Western Mediterranean and evidence for extinction and re-introduction of pond turtles on Corsica and Sardinia (Testudines: Emydidae). Journal of Zoological Systematics and Evolutionary Research, 49(1), 44–57. https://doi.org/10.1111/j.1439-0469.2010.00572.xPinzón Arias, M., Dúran-Prieto, C., Izquierdo, E., & Chaves-Hernández, P. (2017). Aves y tortugas estudiadas en el Oleoducto de los Llanos OrientalesPiry, S., Luikart, G., & Cornuet, J. M. (1999). BOTTLENECK: A computer program for detecting recent reductions in the effective population size using allele frequency data. Journal of Heredity, 90(4), 502–503. https://doi.org/10.1093/jhered/90.4.502Pompanon, F., Bonin, A., Bellemain, E., & Taberlet, P. (2005). Genotyping errors: Causes, consequences and solutions. Nature Reviews Genetics, 6(11), 847–859. https://doi.org/10.1038/nrg1707Pritchard, J. K., Stephens, M., & Donnelly, P. (2000). Interspecific of Population Structure Using Multilocus Genotype Data. Genet, 155, 945–959. https://doi.org/10.1007/s10681-008-9788-0Puechmaille, S. J. (2016). The program structure does not reliably recover the correct population structure when sampling is uneven: Subsampling and new estimators alleviate the problem. Molecular Ecology Resources, 16(3), 608–627. https://doi.org/10.1111/1755-0998.12512Ramo, C. (1982). Biología del galápago (Podocnemis vogli, Müller 1935) en el Hato El Frio, llanos de Apure, Venezuela. Donana, Acta Vertebr., 3, 1–16Raymond, M., & Rousset, F. (1995). Genpop 1.2 Population genetics software for exact test and ecumenicism. Computer Notes, 248–249Rhodin, A. G. J., Iverson, J. B., Bour, R., Fritz, U., Georges, A., Shaffer, H. B., & van Dijk, P. P. (2021). Turtles of the World: Annotated Checklist and Atlas of Taxonomy, Synonymy, Distribution, and Conservation Status (9th Ed.). In Chelonian Research Monographs. https://doi.org/doi:10.3854/crm.8.checklist. atlas.v9.2021Rhodin, A. G. J., Stanford, C. B., Dijk, P. P. Van, Eisemberg, C., Luiselli, L., Mittermeier, R. A., Hudson, R., Horne, B. D., Goode, E. V., Kuchling, G., Walde, A., Baard, E. H. W., Berry, K. H., Bertolero, A., Blanck, T. E. G., Bour, R., Buhlmann, K. A., Cayot, L. J., Collett, S., … Vogt, R. C. (2018). Global Conservation Status of Turtles and Tortoises (Order Testudines). Chelonian Conservation and Biology, 17(2), 135–161. https://doi.org/10.2744/CCB-1348.1Rueda-Almonacid, J. V., Carr, J. L., Mittermeier, R. A., Rodríguez-Mahecha, J. V, Mast, R. B., Vogt, R. C., Rhodin, A. G. J., de la Ossa-Velásquez, J., Rueda, N., & Mittelbach, C. G. (2007). Las tortugas y los crocodilianos de los paises andinos del trópico. In Las tortugas y los cocodrilianos de los países andinos del trópico. Serie de guías tropicales de campo No 6. https://scholar.google.com/scholar?oi=gsb85&q=Las tortugas y los cocodrilianos%0Ade los países andinos del%0Atrópico&lookup=0&hl=es#1Selkoe, K. A., & Toonen, R. J. (2006). Microsatellites for ecologists: A practical guide to using and evaluating microsatellite markers. Ecology Letters, 9(5), 615–629. https://doi.org/10.1111/j.1461-0248.2006.00889.xSepúlveda Seguro, A. M. (2018). Acercamiento a las características demográficas y de uso del hábitat de la tortuga galápaga Podocnemis vogli (Testudines, Podocnemididae), en la Reserva Natural Privada Bojonawi (Vichada, Colombia) durante la estación seca. Universidad de Antioquia, 1, 1–15. https://doi.org/10.3109/08830185.2014.902452%0Ahttps://www.bertelsmann-stiftung.de/fileadmin/files/BSt/Publikationen/GrauePublikationen/MT_Globalization_Report_2018.pdf%0Ahttp://eprints.lse.ac.uk/43447/1/India_globalisation%2C society and inequalities%28lSIB-Colombia, C. (2020). Biodiversidad en Cifras: Número de especies de reptiles registrados en el SiB Colombia. https://cifras.biodiversidad.co/Sites Jr., J. W., Fitzsimmons, N. N., Silva Jr., N. J. Da, & Cantarelli, V. H. (1999). Conservation genetics of the giant Amazon river turtle (Podocnemis expansa; Pelomedusidae) - Inferences from two classes of molecular markers. In Chelonian Conservation and Biology (Vol. 3, Issue 3, pp. 454–463).Spinks, P. Q., Shaffer, H. B., Iverson, J. B., & McCord, W. P. (2004). Phylogenetic hypotheses for the turtle family Geoemydidae. Molecular Phylogenetics and Evolution, 32(1), 164–182. https://doi.org/10.1016/j.ympev.2003.12.015Stanford, C. B., Iverson, J. B., Rhodin, A. G. J., Paul van Dijk, P., Mittermeier, R. A., Kuchling, G., Berry, K. H., Bertolero, A., Bjorndal, K. A., Blanck, T. E. G., Buhlmann, K. A., Burke, R. L., Congdon, J. D., Diagne, T., Edwards, T., Eisemberg, C. C., Ennen, J. R., Forero-Medina, G., Frankel, M., … Walde, A. D. (2020). Turtles and Tortoises Are in Trouble. Current Biology, 30(12), R721–R735. https://doi.org/10.1016/j.cub.2020.04.088SuVersión. (2017). Hoy se realiza una nueva liberación de tortugas galápaga. https://suversion.com.co/home/hoy-se-realiza-una-nueva-liberacion-de-tortugas-galapaga/Taberlet, P., Waits, L. P., & Luikart, G. (1999). Noninvasive genetic sampling: look before you leap. TREE, 14(8), 323–327.Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28(10), 2731–2739. https://doi.org/10.1093/molbev/msr121Trujillo, F., Portocarrero, M., & Gómez, C. (2008). Plan de Manejo y Conservación de Especies Amenazadas en la Reserva de Biósfera El Tuparro: Delfines de río, Manatíes, Nutrias, Jaguares y Tortugas del género Podocnemis. proyecto Pijiwi Orinoko (Fundación Omacha – Fundación Horizonte Verde.Valenzuela, N. (2000). Multiple paternity in side-neck turtles Podocnemis expansa: Evidence from microsatellite DNA data. Molecular Ecology, 9(1), 99–105. https://doi.org/10.1046/j.1365-294X.2000.00806.xVargas-Ramírez, M., Caballero, S., Morales-Betancourt, M. A., Lasso, C. A., Amaya, L., Martínez, J. G., das Neves Silva Viana, M., Vogt, R. C., Farias, I. P., Hrbek, T., Campbell, P. D., & Fritz, U. (2020). Genomic analyses reveal two species of the matamata (Testudines: Chelidae: Chelus spp.) and clarify their phylogeography. Molecular Phylogenetics and Evolution, 148(June 2019), 106823. https://doi.org/10.1016/j.ympev.2020.106823https://doi.org/10.1016/j.ympev.2020.106823 Vargas-Ramí́rez, M., Castaño-Mora, O. V., & Fritz, U. (2008). Molecular phylogeny and divergence times of ancient South American and Malagasy River turtles (Testudines: Pleurodira: Podocnemididae). Organisms Diversity and Evolution, 8(5), 388–398. https://doi.org/10.1016/j.ode.2008.10.001Vargas-Ramírez, M., del Valle, C., Ceballos, C. P., & Fritz, U. (2017). Trachemys medemi n. sp. from northwestern Colombia turns the biogeography of South American slider turtles upside down. Journal of Zoological Systematics and Evolutionary Research, 55(4), 326–339. https://doi.org/10.1111/jzs.12179Vargas-Ramírez, M., Stuckas, H., Castaño-Mora, O. V., & Fritz, U. (2011). Extremely low genetic diversity and weak population differentiation in the endangered Colombian river turtle Podocnemis lewyana (Testudines: Podocnemididae). Conservation Genetics, 13(1), 65–77. https://doi.org/10.1007/s10592-011-0263-4Velo-Antón, G., García-París, M., & Cordero Rivera, A. (2008). Patterns of nuclear and mitochondrial DNA variation in Iberian populations of Emys orbicularis (Emydidae): Conservation implications. Conservation Genetics, 9(5), 1263–1274. https://doi.org/10.1007/s10592-007-9457-1Velo-Antón, G., García-París, M., & Cordero Rivera, A. (2008). Patterns of nuclear and mitochondrial DNA variation in Iberian populations of Emys orbicularis (Emydidae): Conservation implications. Conservation Genetics, 9(5), 1263–1274. https://doi.org/10.1007/s10592-007-9457-1Violeta. (2020). 500 galápagas sabaneras son liberadas en Arauca. https://www.violetastereo.com/wp/500-galapagas-sabaneras-son-liberadas-en-arauca/Waples, R. S., & Allendorf, F. (2015). Testing for hardy-weinberg proportions: Have we lost the plot? Journal of Heredity, 106(1), 1–19. https://doi.org/10.1093/jhered/esu062Wilson, G. A., & Rannala, B. (2003). Bayesian inference of recent migration rates using multilocus genotypes. 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Diversity and gene flow in four Colombian turtle populations of Podocnemis vogli (Testudines: Podocnemididae)

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