Semantic information extraction from microscopy medical images

Automatic inference of the semantics of an image is still a highly challenging research problem in the computer vision area. It is concerned with applying computational and mathematical techniques, attempting to figure out the semantic meaning of the image content. In the Medical Imaging domain, thi...

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Autores:
Díaz Cabrera, Gloria Mercedes
Tipo de recurso:
Doctoral thesis
Fecha de publicación:
2010
Institución:
Universidad Nacional de Colombia
Repositorio:
Universidad Nacional de Colombia
Idioma:
spa
OAI Identifier:
oai:repositorio.unal.edu.co:unal/7508
Acceso en línea:
https://repositorio.unal.edu.co/handle/unal/7508
http://bdigital.unal.edu.co/3894/
Palabra clave:
61 Ciencias médicas; Medicina / Medicine and health
62 Ingeniería y operaciones afines / Engineering
Semantic extraction from cytologic image
Semantic extraction from histologic image
Rights
openAccess
License
Atribución-NoComercial 4.0 Internacional
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oai_identifier_str oai:repositorio.unal.edu.co:unal/7508
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network_name_str Universidad Nacional de Colombia
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spelling Atribución-NoComercial 4.0 InternacionalDerechos reservados - Universidad Nacional de Colombiahttp://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Romero, EduardoDíaz Cabrera, Gloria Mercedesdf0094ba-5d1d-4764-b81c-c4d3c61061523002019-06-24T16:38:30Z2019-06-24T16:38:30Z2010https://repositorio.unal.edu.co/handle/unal/7508http://bdigital.unal.edu.co/3894/Automatic inference of the semantics of an image is still a highly challenging research problem in the computer vision area. It is concerned with applying computational and mathematical techniques, attempting to figure out the semantic meaning of the image content. In the Medical Imaging domain, this problem is even more complicated because of the overwhelming amount of prior medical knowledge that a Physician requires to cope with the variations of what is considered as the prototypical disease. This thesis addresses the main problems associated to the microscopic cyto and histo pathological image semantic analysis, including standardization of color and intensity characteristics, development of visual content representation methods that taken advantage of the particular characteristics of these images, and appropriate use of conventional learning models that allowed distinguishing different biological concepts in the images. This document presents the design, implementation and evaluation of strategies for reaching proper levels of semantic image interpretation, applied to two important microscopic applications: analysis and interpretation of cytological images for quantification of malarial infected erythrocytes, and analysis of micro-structural tissue components for automatic semantic annotation of histopathological images of skin biopsies diagnosed with basal-cell carcinoma. Obtained results outperform what has been so far reported in the literature for both applications, demonstrating the effectiveness and versatility of the proposed strategies. Main ideas and techniques developed in this work were also applied to the analysis and interpretation of other biomedical images as brain volumes and mammography. Results in these applications are included as document annex.Doctoradoapplication/pdfspaUniversidad Nacional de Colombia Sede Bogotá Facultad de Ingeniería Departamento de Ingeniería Eléctrica y Electrónica Ingeniería EléctricaIngeniería EléctricaDíaz Cabrera, Gloria Mercedes (2010) Semantic information extraction from microscopy medical images. Doctorado thesis, Universidad Nacional de Colombia.61 Ciencias médicas; Medicina / Medicine and health62 Ingeniería y operaciones afines / EngineeringSemantic extraction from cytologic imageSemantic extraction from histologic imageSemantic information extraction from microscopy medical imagesTrabajo de grado - Doctoradoinfo:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/acceptedVersionhttp://purl.org/coar/resource_type/c_db06Texthttp://purl.org/redcol/resource_type/TDORIGINAL298278.2011.pdfapplication/pdf15449666https://repositorio.unal.edu.co/bitstream/unal/7508/1/298278.2011.pdf569d66a978d7957d480fc0475f76855eMD51THUMBNAIL298278.2011.pdf.jpg298278.2011.pdf.jpgGenerated Thumbnailimage/jpeg4078https://repositorio.unal.edu.co/bitstream/unal/7508/2/298278.2011.pdf.jpg50ce662948e6012b9039dceba263c789MD52unal/7508oai:repositorio.unal.edu.co:unal/75082023-08-27 23:04:20.104Repositorio Institucional Universidad Nacional de Colombiarepositorio_nal@unal.edu.co
dc.title.spa.fl_str_mv Semantic information extraction from microscopy medical images
title Semantic information extraction from microscopy medical images
spellingShingle Semantic information extraction from microscopy medical images
61 Ciencias médicas; Medicina / Medicine and health
62 Ingeniería y operaciones afines / Engineering
Semantic extraction from cytologic image
Semantic extraction from histologic image
title_short Semantic information extraction from microscopy medical images
title_full Semantic information extraction from microscopy medical images
title_fullStr Semantic information extraction from microscopy medical images
title_full_unstemmed Semantic information extraction from microscopy medical images
title_sort Semantic information extraction from microscopy medical images
dc.creator.fl_str_mv Díaz Cabrera, Gloria Mercedes
dc.contributor.author.spa.fl_str_mv Díaz Cabrera, Gloria Mercedes
dc.contributor.spa.fl_str_mv Romero, Eduardo
dc.subject.ddc.spa.fl_str_mv 61 Ciencias médicas; Medicina / Medicine and health
62 Ingeniería y operaciones afines / Engineering
topic 61 Ciencias médicas; Medicina / Medicine and health
62 Ingeniería y operaciones afines / Engineering
Semantic extraction from cytologic image
Semantic extraction from histologic image
dc.subject.proposal.spa.fl_str_mv Semantic extraction from cytologic image
Semantic extraction from histologic image
description Automatic inference of the semantics of an image is still a highly challenging research problem in the computer vision area. It is concerned with applying computational and mathematical techniques, attempting to figure out the semantic meaning of the image content. In the Medical Imaging domain, this problem is even more complicated because of the overwhelming amount of prior medical knowledge that a Physician requires to cope with the variations of what is considered as the prototypical disease. This thesis addresses the main problems associated to the microscopic cyto and histo pathological image semantic analysis, including standardization of color and intensity characteristics, development of visual content representation methods that taken advantage of the particular characteristics of these images, and appropriate use of conventional learning models that allowed distinguishing different biological concepts in the images. This document presents the design, implementation and evaluation of strategies for reaching proper levels of semantic image interpretation, applied to two important microscopic applications: analysis and interpretation of cytological images for quantification of malarial infected erythrocytes, and analysis of micro-structural tissue components for automatic semantic annotation of histopathological images of skin biopsies diagnosed with basal-cell carcinoma. Obtained results outperform what has been so far reported in the literature for both applications, demonstrating the effectiveness and versatility of the proposed strategies. Main ideas and techniques developed in this work were also applied to the analysis and interpretation of other biomedical images as brain volumes and mammography. Results in these applications are included as document annex.
publishDate 2010
dc.date.issued.spa.fl_str_mv 2010
dc.date.accessioned.spa.fl_str_mv 2019-06-24T16:38:30Z
dc.date.available.spa.fl_str_mv 2019-06-24T16:38:30Z
dc.type.spa.fl_str_mv Trabajo de grado - Doctorado
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/doctoralThesis
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/acceptedVersion
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http://bdigital.unal.edu.co/3894/
dc.language.iso.spa.fl_str_mv spa
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dc.relation.ispartof.spa.fl_str_mv Universidad Nacional de Colombia Sede Bogotá Facultad de Ingeniería Departamento de Ingeniería Eléctrica y Electrónica Ingeniería Eléctrica
Ingeniería Eléctrica
dc.relation.references.spa.fl_str_mv Díaz Cabrera, Gloria Mercedes (2010) Semantic information extraction from microscopy medical images. Doctorado thesis, Universidad Nacional de Colombia.
dc.rights.spa.fl_str_mv Derechos reservados - Universidad Nacional de Colombia
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dc.rights.license.spa.fl_str_mv Atribución-NoComercial 4.0 Internacional
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dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv Atribución-NoComercial 4.0 Internacional
Derechos reservados - Universidad Nacional de Colombia
http://creativecommons.org/licenses/by-nc/4.0/
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.mimetype.spa.fl_str_mv application/pdf
institution Universidad Nacional de Colombia
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repository.name.fl_str_mv Repositorio Institucional Universidad Nacional de Colombia
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