Genetic structure and evidence of putative darwinian diversifying selection in the potato yellow vein virus (pyvv)
The population structure and genetic variation of Potato yellow vein virus (PYVV) were estimated by analysis of the nucleotide and deduced amino acid sequence of the coat protein of 69 isolates, reported in GenBank, from Solanum tuberosum (ST) and Solanum phureja (SP) hosts from different regions; p...
- Autores:
-
Chaves-Bedoya, Giovanni
Guzman Barney, Monica
Ortiz-Rojas, Luz Yineth
- Tipo de recurso:
- Article of journal
- Fecha de publicación:
- 2013
- Institución:
- Universidad Nacional de Colombia
- Repositorio:
- Universidad Nacional de Colombia
- Idioma:
- spa
- OAI Identifier:
- oai:repositorio.unal.edu.co:unal/72296
- Acceso en línea:
- https://repositorio.unal.edu.co/handle/unal/72296
http://bdigital.unal.edu.co/36769/
- Palabra clave:
- Fitopatogía
papa
PYVV
Solanum tuberosum
viral proteins
genetic variability
- Rights
- openAccess
- License
- Atribución-NoComercial 4.0 Internacional
| id |
UNACIONAL2_a74f33807063323a72c7ede97514f720 |
|---|---|
| oai_identifier_str |
oai:repositorio.unal.edu.co:unal/72296 |
| network_acronym_str |
UNACIONAL2 |
| network_name_str |
Universidad Nacional de Colombia |
| repository_id_str |
|
| dc.title.spa.fl_str_mv |
Genetic structure and evidence of putative darwinian diversifying selection in the potato yellow vein virus (pyvv) |
| title |
Genetic structure and evidence of putative darwinian diversifying selection in the potato yellow vein virus (pyvv) |
| spellingShingle |
Genetic structure and evidence of putative darwinian diversifying selection in the potato yellow vein virus (pyvv) Fitopatogía papa PYVV Solanum tuberosum viral proteins genetic variability |
| title_short |
Genetic structure and evidence of putative darwinian diversifying selection in the potato yellow vein virus (pyvv) |
| title_full |
Genetic structure and evidence of putative darwinian diversifying selection in the potato yellow vein virus (pyvv) |
| title_fullStr |
Genetic structure and evidence of putative darwinian diversifying selection in the potato yellow vein virus (pyvv) |
| title_full_unstemmed |
Genetic structure and evidence of putative darwinian diversifying selection in the potato yellow vein virus (pyvv) |
| title_sort |
Genetic structure and evidence of putative darwinian diversifying selection in the potato yellow vein virus (pyvv) |
| dc.creator.fl_str_mv |
Chaves-Bedoya, Giovanni Guzman Barney, Monica Ortiz-Rojas, Luz Yineth |
| dc.contributor.author.spa.fl_str_mv |
Chaves-Bedoya, Giovanni Guzman Barney, Monica Ortiz-Rojas, Luz Yineth |
| dc.subject.proposal.spa.fl_str_mv |
Fitopatogía papa PYVV Solanum tuberosum viral proteins genetic variability |
| topic |
Fitopatogía papa PYVV Solanum tuberosum viral proteins genetic variability |
| description |
The population structure and genetic variation of Potato yellow vein virus (PYVV) were estimated by analysis of the nucleotide and deduced amino acid sequence of the coat protein of 69 isolates, reported in GenBank, from Solanum tuberosum (ST) and Solanum phureja (SP) hosts from different regions; predominantly Cundinamarca, Antioquia and Nariño, located in central and southwestern Colombia. Bioinformatics analysis revealed that despite the wide geographic distribution of different hosts and different collecting years, PYVV maintains a genetic similarity between 97.1 to 100.0%, indicating high spatial and temporal genetic stability of the major coat protein. No recombination events were found, but evidence was seen for the first time that this protein could be undergoing Darwinian diversifying selection. |
| publishDate |
2013 |
| dc.date.issued.spa.fl_str_mv |
2013 |
| dc.date.accessioned.spa.fl_str_mv |
2019-07-03T15:04:09Z |
| dc.date.available.spa.fl_str_mv |
2019-07-03T15:04:09Z |
| dc.type.spa.fl_str_mv |
Artículo de revista |
| dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_2df8fbb1 |
| dc.type.driver.spa.fl_str_mv |
info:eu-repo/semantics/article |
| dc.type.version.spa.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_6501 |
| dc.type.coarversion.spa.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
| dc.type.content.spa.fl_str_mv |
Text |
| dc.type.redcol.spa.fl_str_mv |
http://purl.org/redcol/resource_type/ART |
| format |
http://purl.org/coar/resource_type/c_6501 |
| status_str |
publishedVersion |
| dc.identifier.uri.none.fl_str_mv |
https://repositorio.unal.edu.co/handle/unal/72296 |
| dc.identifier.eprints.spa.fl_str_mv |
http://bdigital.unal.edu.co/36769/ |
| url |
https://repositorio.unal.edu.co/handle/unal/72296 http://bdigital.unal.edu.co/36769/ |
| dc.language.iso.spa.fl_str_mv |
spa |
| language |
spa |
| dc.relation.spa.fl_str_mv |
http://revistas.unal.edu.co/index.php/agrocol/article/view/37770 |
| dc.relation.ispartof.spa.fl_str_mv |
Universidad Nacional de Colombia Revistas electrónicas UN Agronomía Colombiana Agronomía Colombiana |
| dc.relation.ispartofseries.none.fl_str_mv |
Agronomía Colombiana; Vol. 31, núm. 2 (2013); 161-168 Agronomía Colombiana; Vol. 31, núm. 2 (2013); 161-168 2357-3732 0120-9965 |
| dc.relation.references.spa.fl_str_mv |
Chaves-Bedoya, Giovanni and Guzman Barney, Monica and Ortiz-Rojas, Luz Yineth (2013) Genetic structure and evidence of putative darwinian diversifying selection in the potato yellow vein virus (pyvv). Agronomía Colombiana; Vol. 31, núm. 2 (2013); 161-168 Agronomía Colombiana; Vol. 31, núm. 2 (2013); 161-168 2357-3732 0120-9965 . |
| dc.rights.spa.fl_str_mv |
Derechos reservados - Universidad Nacional de Colombia |
| dc.rights.coar.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
| dc.rights.license.spa.fl_str_mv |
Atribución-NoComercial 4.0 Internacional |
| dc.rights.uri.spa.fl_str_mv |
http://creativecommons.org/licenses/by-nc/4.0/ |
| dc.rights.accessrights.spa.fl_str_mv |
info:eu-repo/semantics/openAccess |
| rights_invalid_str_mv |
Atribución-NoComercial 4.0 Internacional Derechos reservados - Universidad Nacional de Colombia http://creativecommons.org/licenses/by-nc/4.0/ http://purl.org/coar/access_right/c_abf2 |
| eu_rights_str_mv |
openAccess |
| dc.format.mimetype.spa.fl_str_mv |
application/pdf |
| dc.publisher.spa.fl_str_mv |
Universidad Nacional de Colombia, Facultad de Agronomía, Centro Editorial |
| institution |
Universidad Nacional de Colombia |
| bitstream.url.fl_str_mv |
https://repositorio.unal.edu.co/bitstream/unal/72296/1/37770-167481-1-SP.xlsx https://repositorio.unal.edu.co/bitstream/unal/72296/2/37770-167479-1-SP.jpg https://repositorio.unal.edu.co/bitstream/unal/72296/3/37770-167482-1-SP.docx https://repositorio.unal.edu.co/bitstream/unal/72296/4/37770-167477-1-SP.jpg https://repositorio.unal.edu.co/bitstream/unal/72296/5/37770-167480-1-SP.xlsx https://repositorio.unal.edu.co/bitstream/unal/72296/6/37770-178771-2-PB.pdf https://repositorio.unal.edu.co/bitstream/unal/72296/7/37770-167478-1-SP.jpg https://repositorio.unal.edu.co/bitstream/unal/72296/8/37770-167483-1-SP.docx https://repositorio.unal.edu.co/bitstream/unal/72296/9/37770-178771-2-PB.pdf.jpg |
| bitstream.checksum.fl_str_mv |
ea24a4323c6a19a8a15715ab8d2626f6 63769129b1717ba4558e153d0910ad6d 2d3e6d5b28b0a792715de7d54f0c7329 3f3322cb13a9016b4d3daf9dfc90f56e c0378dc5d2b997259a733ccfe08be72d 57a31e28de8dd11052f2bfc86b143719 d10c3c68cdfa3939a43abe476d79ddb7 62b32077336f91838e4bd664435e45c9 293c36948460953542daf60665056427 |
| bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 MD5 MD5 MD5 MD5 MD5 |
| repository.name.fl_str_mv |
Repositorio Institucional Universidad Nacional de Colombia |
| repository.mail.fl_str_mv |
repositorio_nal@unal.edu.co |
| _version_ |
1814089271833788416 |
| spelling |
Atribución-NoComercial 4.0 InternacionalDerechos reservados - Universidad Nacional de Colombiahttp://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Chaves-Bedoya, Giovanni45c8b19d-cfa6-4f49-89dc-5fd7a1569671300Guzman Barney, Monica92a0972d-4d05-47c2-b4ae-b52db5c876c0300Ortiz-Rojas, Luz Yinethaccf50e1-f14c-40e8-824f-3fbaa12403123002019-07-03T15:04:09Z2019-07-03T15:04:09Z2013https://repositorio.unal.edu.co/handle/unal/72296http://bdigital.unal.edu.co/36769/The population structure and genetic variation of Potato yellow vein virus (PYVV) were estimated by analysis of the nucleotide and deduced amino acid sequence of the coat protein of 69 isolates, reported in GenBank, from Solanum tuberosum (ST) and Solanum phureja (SP) hosts from different regions; predominantly Cundinamarca, Antioquia and Nariño, located in central and southwestern Colombia. Bioinformatics analysis revealed that despite the wide geographic distribution of different hosts and different collecting years, PYVV maintains a genetic similarity between 97.1 to 100.0%, indicating high spatial and temporal genetic stability of the major coat protein. No recombination events were found, but evidence was seen for the first time that this protein could be undergoing Darwinian diversifying selection.application/pdfspaUniversidad Nacional de Colombia, Facultad de Agronomía, Centro Editorialhttp://revistas.unal.edu.co/index.php/agrocol/article/view/37770Universidad Nacional de Colombia Revistas electrónicas UN Agronomía ColombianaAgronomía ColombianaAgronomía Colombiana; Vol. 31, núm. 2 (2013); 161-168 Agronomía Colombiana; Vol. 31, núm. 2 (2013); 161-168 2357-3732 0120-9965Chaves-Bedoya, Giovanni and Guzman Barney, Monica and Ortiz-Rojas, Luz Yineth (2013) Genetic structure and evidence of putative darwinian diversifying selection in the potato yellow vein virus (pyvv). Agronomía Colombiana; Vol. 31, núm. 2 (2013); 161-168 Agronomía Colombiana; Vol. 31, núm. 2 (2013); 161-168 2357-3732 0120-9965 .Genetic structure and evidence of putative darwinian diversifying selection in the potato yellow vein virus (pyvv)Artículo de revistainfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1http://purl.org/coar/version/c_970fb48d4fbd8a85Texthttp://purl.org/redcol/resource_type/ARTFitopatogíapapaPYVVSolanum tuberosumviral proteinsgenetic variabilityORIGINAL37770-167481-1-SP.xlsxapplication/vnd.openxmlformats-officedocument.spreadsheetml.sheet55435https://repositorio.unal.edu.co/bitstream/unal/72296/1/37770-167481-1-SP.xlsxea24a4323c6a19a8a15715ab8d2626f6MD5137770-167479-1-SP.jpgimage/jpeg1630590https://repositorio.unal.edu.co/bitstream/unal/72296/2/37770-167479-1-SP.jpg63769129b1717ba4558e153d0910ad6dMD5237770-167482-1-SP.docxapplication/vnd.openxmlformats-officedocument.wordprocessingml.document50159https://repositorio.unal.edu.co/bitstream/unal/72296/3/37770-167482-1-SP.docx2d3e6d5b28b0a792715de7d54f0c7329MD5337770-167477-1-SP.jpgimage/jpeg1194858https://repositorio.unal.edu.co/bitstream/unal/72296/4/37770-167477-1-SP.jpg3f3322cb13a9016b4d3daf9dfc90f56eMD5437770-167480-1-SP.xlsxapplication/vnd.openxmlformats-officedocument.spreadsheetml.sheet40991https://repositorio.unal.edu.co/bitstream/unal/72296/5/37770-167480-1-SP.xlsxc0378dc5d2b997259a733ccfe08be72dMD5537770-178771-2-PB.pdfapplication/pdf327111https://repositorio.unal.edu.co/bitstream/unal/72296/6/37770-178771-2-PB.pdf57a31e28de8dd11052f2bfc86b143719MD5637770-167478-1-SP.jpgimage/jpeg237605https://repositorio.unal.edu.co/bitstream/unal/72296/7/37770-167478-1-SP.jpgd10c3c68cdfa3939a43abe476d79ddb7MD5737770-167483-1-SP.docxapplication/vnd.openxmlformats-officedocument.wordprocessingml.document36071https://repositorio.unal.edu.co/bitstream/unal/72296/8/37770-167483-1-SP.docx62b32077336f91838e4bd664435e45c9MD58THUMBNAIL37770-178771-2-PB.pdf.jpg37770-178771-2-PB.pdf.jpgGenerated Thumbnailimage/jpeg8868https://repositorio.unal.edu.co/bitstream/unal/72296/9/37770-178771-2-PB.pdf.jpg293c36948460953542daf60665056427MD59unal/72296oai:repositorio.unal.edu.co:unal/722962023-06-23 23:03:06.666Repositorio Institucional Universidad Nacional de Colombiarepositorio_nal@unal.edu.co |