Análisis de la expresión de genes asociados con defensa en el modelo palma de aceite -thielaviopsis paradoxa (de seynes) höhn

gráficas, ilustraciones, tablas

Autores:: Gaitán Chaparro, Sandra Liliana

Tipo de recurso:: Doctoral thesis

Fecha de publicación:: 2021

Institución:: Universidad Nacional de Colombia

Repositorio:: Universidad Nacional de Colombia

Idioma:

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network_acronym_str	UNACIONAL2
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repository_id_str
dc.title.spa.fl_str_mv	Análisis de la expresión de genes asociados con defensa en el modelo palma de aceite -thielaviopsis paradoxa (de seynes) höhn
dc.title.translated.eng.fl_str_mv	Expression analysis of genes associated with defense in the model oil palm -thielaviopsis paradoxa (de seynes) höhn
title	Análisis de la expresión de genes asociados con defensa en el modelo palma de aceite -thielaviopsis paradoxa (de seynes) höhn
spellingShingle	Análisis de la expresión de genes asociados con defensa en el modelo palma de aceite -thielaviopsis paradoxa (de seynes) höhn 580 - Plantas::584 - Monocotiledóneas, angiospermas basales, clorantales, magnolias 630 - Agricultura y tecnologías relacionadas::632 - Lesiones, enfermedades, plagas vegetales 630 - Agricultura y tecnologías relacionadas::633 - Cultivos de campo y de plantación Oil palm OxG hybrid, spear-arrow rot, T. paradoxa, RNASeq, defense response. Oil palm OxG hybrid Spear-arrow rot T. paradoxa RNASeq Defense response Híbrido OxG de palma de aceite Pudrición de flecha T. paradoxa RNASeq Respuesta de defensa
title_short	Análisis de la expresión de genes asociados con defensa en el modelo palma de aceite -thielaviopsis paradoxa (de seynes) höhn
title_full	Análisis de la expresión de genes asociados con defensa en el modelo palma de aceite -thielaviopsis paradoxa (de seynes) höhn
title_fullStr	Análisis de la expresión de genes asociados con defensa en el modelo palma de aceite -thielaviopsis paradoxa (de seynes) höhn
title_full_unstemmed	Análisis de la expresión de genes asociados con defensa en el modelo palma de aceite -thielaviopsis paradoxa (de seynes) höhn
title_sort	Análisis de la expresión de genes asociados con defensa en el modelo palma de aceite -thielaviopsis paradoxa (de seynes) höhn
dc.creator.fl_str_mv	Gaitán Chaparro, Sandra Liliana
dc.contributor.advisor.none.fl_str_mv	Romero Angulo, Hernán Mauricio Riaño, Diego Mauricio
dc.contributor.author.none.fl_str_mv	Gaitán Chaparro, Sandra Liliana
dc.subject.ddc.spa.fl_str_mv	580 - Plantas::584 - Monocotiledóneas, angiospermas basales, clorantales, magnolias 630 - Agricultura y tecnologías relacionadas::632 - Lesiones, enfermedades, plagas vegetales 630 - Agricultura y tecnologías relacionadas::633 - Cultivos de campo y de plantación
topic	580 - Plantas::584 - Monocotiledóneas, angiospermas basales, clorantales, magnolias 630 - Agricultura y tecnologías relacionadas::632 - Lesiones, enfermedades, plagas vegetales 630 - Agricultura y tecnologías relacionadas::633 - Cultivos de campo y de plantación Oil palm OxG hybrid, spear-arrow rot, T. paradoxa, RNASeq, defense response. Oil palm OxG hybrid Spear-arrow rot T. paradoxa RNASeq Defense response Híbrido OxG de palma de aceite Pudrición de flecha T. paradoxa RNASeq Respuesta de defensa
dc.subject.proposal.eng.fl_str_mv	Oil palm OxG hybrid, spear-arrow rot, T. paradoxa, RNASeq, defense response. Oil palm OxG hybrid Spear-arrow rot T. paradoxa RNASeq Defense response
dc.subject.proposal.spa.fl_str_mv	Híbrido OxG de palma de aceite Pudrición de flecha T. paradoxa RNASeq Respuesta de defensa
description	gráficas, ilustraciones, tablas
publishDate	2021
dc.date.accessioned.none.fl_str_mv	2021-11-09T14:37:17Z
dc.date.available.none.fl_str_mv	2021-11-09T14:37:17Z
dc.date.issued.none.fl_str_mv	2021-08-28
dc.type.spa.fl_str_mv	Trabajo de grado - Doctorado
dc.type.driver.spa.fl_str_mv	info:eu-repo/semantics/doctoralThesis
dc.type.version.spa.fl_str_mv	info:eu-repo/semantics/acceptedVersion
dc.type.coar.spa.fl_str_mv	http://purl.org/coar/resource_type/c_db06
dc.type.content.spa.fl_str_mv	Text
dc.type.redcol.spa.fl_str_mv	http://purl.org/redcol/resource_type/TD
format	http://purl.org/coar/resource_type/c_db06
status_str	acceptedVersion
dc.identifier.uri.none.fl_str_mv	https://repositorio.unal.edu.co/handle/unal/80667
dc.identifier.instname.spa.fl_str_mv	Universidad Nacional de Colombia
dc.identifier.reponame.spa.fl_str_mv	Repositorio Institucional Universidad Nacional de Colombia
dc.identifier.repourl.spa.fl_str_mv	https://repositorio.unal.edu.co/
url	https://repositorio.unal.edu.co/handle/unal/80667 https://repositorio.unal.edu.co/
identifier_str_mv	Universidad Nacional de Colombia Repositorio Institucional Universidad Nacional de Colombia
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spelling	Reconocimiento 4.0 Internacionalhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Romero Angulo, Hernán Mauriciofd40c42592d6bdb0711b58a672ddfaddRiaño, Diego Mauricio28994ecec5d31a49ea8a66748dc679bdGaitán Chaparro, Sandra Liliana99c885fac26a23cf81ed16a4374e49f42021-11-09T14:37:17Z2021-11-09T14:37:17Z2021-08-28https://repositorio.unal.edu.co/handle/unal/80667Universidad Nacional de ColombiaRepositorio Institucional Universidad Nacional de Colombiahttps://repositorio.unal.edu.co/gráficas, ilustraciones, tablasLa enfermedad de la pudrición de flecha en la palma de aceite, es causada por el hongo patógeno Thielaviopsis paradoxa. El híbrido OxG proporciona un valioso recurso genético para seleccionar el germoplasma resistente y establecer los genes asociados con resistencia a este patógeno. En este estudio, el híbrido OxG con código 517 fue identificado como un genotipo resistente que limitó la colonización de T. paradoxa, mientras que otro híbrido OxG con código 485 mostró alta susceptibilidad. Para comprender la respuesta transcripcional del híbrido a la infección por T. paradoxa, estos dos materiales del híbrido OxG se inocularon con este patógeno y se comparó su perfil transcripcional mediante secuenciación de ARN en seis puntos de tiempo (0, 24, 48, 72, 96 y 120 hpi). Para establecer los puntos de tiempo se realizó una caracterización del desarrollo de la enfermedad y se estableció una escala de severidad. Se detectaron 1798 genes expresados diferencialmente (DEG), incluidos 454 genes sobreexpresados y 86 subexpresados, en el híbrido 517, en comparación con el híbrido 485. Los perfiles de transcripción de veinte genes putativos relacionados con la defensa de la palma de aceite se midieron mediante transcripción inversa y PCR cuantitativa en la hoja de los híbridos de palma de aceite. Los genes están involucrados en los procesos de percepción y señales de transducción, generación y depuración de ROS, vía relacionada con fenilpropanoide, inhibidores proteasa serina, factores de transcripción, biosíntesis de fitohormonas (AJ y ET) y proteínas relacionadas con patogénesis. Los resultados mostraron un aumento en la expresión de estos genes dentro de las primeras 24 hpi en el híbrido 517 y que esta sobreexpresión se mantenía en el tiempo evaluado. Esta sobrexpresión en fases tempranas de la infección podría contribuir a mediar la resistencia a T. paradoxa. En conclusión, los resultados proporcionaron información sobre el proceso de defensa dinámico del híbrido OxG y sugieren que los materiales del híbrido de palma de aceite responden de manera diferente en términos de expresión de la vía fenilpropanoide y proteínas relacionadas con patogénesis para conferir defensa y resistencia a esta enfermedad. (Texto tomado de la fuente)Spear rot disease in oil palm, is caused by the pathogenic fungus Thielaviopsis paradoxa. The OxG hybrid provides a valuable genetic resource for selecting resistant germplasm and for stablish resistance-associated genes to this pathogen. In this study, an OxG hybrid coded 517 was identified as a resistant genotype that limited the colonization of T. paradoxa, while another OxG hybrid coded 485 showed high susceptibility. To understand the OxG hybrid transcriptional response to T. paradoxa infection, these two OxG hybrid materials were inoculated with this pathogen and its transcriptional profile was compared by RNA sequencing at six time points (0, 24, 48, 72, 96 and 120 hpi). To establish the time points, a characterization of the development of the disease was performed and a severity scale was established. 1798 differentially expressed genes (DEG), including 454 up-regulated genes and 86 downregulated genes, were detected in hybrid 517, compared to hybrid 485. The transcription profiles of twenty putative genes related to oil palm defense were measured by reverse transcription and quantitative PCR at the leaves of oil palm hybrids. Genes are involved in the processes of signal perception and transduction, generation and purification of ROS, a pathway related to phenylpropanoid, serine protease inhibitors, transcription factors, phytohormone biosynthesis (AJ and ET) and pathogenesis related proteins. These results show an increase in the expression of these genes within the first 24 hpi in hybrid 517 and that this overexpression was maintained over the evaluated time. This overexpression in the early stages of infection could contribute to mediate resistance to T. paradoxa. In conclusion, the results provided information on the dynamic defense process of the OxG hybrid and suggested that the oil palm hybrid materials respond differently in terms of expression of the phenylpropanoid pathway and pathogenesis-related proteins to confer defense and resistance to this disease.DoctoradoDoctor en Biotecnologíaxiii, 126 páginasapplication/pdfUniversidad Nacional de ColombiaBogotá - Ciencias - Doctorado en BiotecnologíaObservatorio Astronómico NacionalFacultad de CienciasBogotá - ColombiaUniversidad Nacional de Colombia - Sede Bogotá580 - Plantas::584 - Monocotiledóneas, angiospermas basales, clorantales, magnolias630 - Agricultura y tecnologías relacionadas::632 - Lesiones, enfermedades, plagas vegetales630 - Agricultura y tecnologías relacionadas::633 - Cultivos de campo y de plantaciónOil palm OxG hybrid, spear-arrow rot, T. paradoxa, RNASeq, defense response.Oil palm OxG hybridSpear-arrow rotT. paradoxaRNASeqDefense responseHíbrido OxG de palma de aceitePudrición de flechaT. paradoxaRNASeqRespuesta de defensaAnálisis de la expresión de genes asociados con defensa en el modelo palma de aceite -thielaviopsis paradoxa (de seynes) höhnExpression analysis of genes associated with defense in the model oil palm -thielaviopsis paradoxa (de seynes) höhnTrabajo de grado - Doctoradoinfo:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/acceptedVersionhttp://purl.org/coar/resource_type/c_db06Texthttp://purl.org/redcol/resource_type/TDAbbas, E. 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Journal of Plant Growth Regulation, 35(4), 1159–1174. doi: 10.1007/s00344-016-9600-7Fondo de Fomento PalmeroEstudiantesInvestigadoresMaestrosPúblico generalLICENSElicense.txtlicense.txttext/plain; charset=utf-84074https://repositorio.unal.edu.co/bitstream/unal/80667/1/license.txt8153f7789df02f0a4c9e079953658ab2MD51ORIGINALTESIS_FINAL_AGOSTO_SGAITAN.pdfTESIS_FINAL_AGOSTO_SGAITAN.pdfTesis de Doctorado en Biotecnologíaapplication/pdf5640413https://repositorio.unal.edu.co/bitstream/unal/80667/2/TESIS_FINAL_AGOSTO_SGAITAN.pdf5d7e1eb2df11d843413f6b5ce59daa34MD52THUMBNAILTESIS_FINAL_AGOSTO_SGAITAN.pdf.jpgTESIS_FINAL_AGOSTO_SGAITAN.pdf.jpgGenerated Thumbnailimage/jpeg4192https://repositorio.unal.edu.co/bitstream/unal/80667/3/TESIS_FINAL_AGOSTO_SGAITAN.pdf.jpg91bc6c210c14cf8a53623aba4ee9e88fMD53unal/80667oai:repositorio.unal.edu.co:unal/806672023-07-30 23:04:34.22Repositorio Institucional Universidad Nacional de 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EVESURBIFBPUiBMQSBTRUNSRVRBUsONQSBHRU5FUkFMLiAqTEEgVEVTSVMgQSBQVUJMSUNBUiBERUJFIFNFUiBMQSBWRVJTScOTTiBGSU5BTCBBUFJPQkFEQS4gCgpBbCBoYWNlciBjbGljIGVuIGVsIHNpZ3VpZW50ZSBib3TDs24sIHVzdGVkIGluZGljYSBxdWUgZXN0w6EgZGUgYWN1ZXJkbyBjb24gZXN0b3MgdMOpcm1pbm9zLiBTaSB0aWVuZSBhbGd1bmEgZHVkYSBzb2JyZSBsYSBsaWNlbmNpYSwgcG9yIGZhdm9yLCBjb250YWN0ZSBjb24gZWwgYWRtaW5pc3RyYWRvciBkZWwgc2lzdGVtYS4KClVOSVZFUlNJREFEIE5BQ0lPTkFMIERFIENPTE9NQklBIC0gw5psdGltYSBtb2RpZmljYWNpw7NuIDE5LzEwLzIwMjEK

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