Análisis de modelos de difusión por imágenes de resonancia magnética nuclear con machine learning

ilustraciones, fotografías, gráficas

Autores:
Prieto González, Leonar Steven
Tipo de recurso:
Fecha de publicación:
2022
Institución:
Universidad Nacional de Colombia
Repositorio:
Universidad Nacional de Colombia
Idioma:
spa
OAI Identifier:
oai:repositorio.unal.edu.co:unal/82118
Acceso en línea:
https://repositorio.unal.edu.co/handle/unal/82118
https://repositorio.unal.edu.co/
Palabra clave:
610 - Medicina y salud
Imagen de Difusión por Resonancia Magnética
Procesamiento de Imagen Asistido por Computador
Diffusion Magnetic Resonance Imaging
Image Processing, Computer-Assisted
Imágenes por resonancia magnética
IRM
difusión tisular
movimiento incoherente intravóxel
aprendizaje automático
ADC
DWI
IVIM
Magnetic Resonance Imaging
MRI
tissue diffusion
Intravoxel Incoherent Motion
Machine Learning
Rights
openAccess
License
Reconocimiento 4.0 Internacional
id UNACIONAL2_86e933bf124ac821de5c8bd840441bfc
oai_identifier_str oai:repositorio.unal.edu.co:unal/82118
network_acronym_str UNACIONAL2
network_name_str Universidad Nacional de Colombia
repository_id_str
dc.title.spa.fl_str_mv Análisis de modelos de difusión por imágenes de resonancia magnética nuclear con machine learning
dc.title.translated.eng.fl_str_mv Analysis of nuclear magnetic resonance imaging diffusion models using machine learning
title Análisis de modelos de difusión por imágenes de resonancia magnética nuclear con machine learning
spellingShingle Análisis de modelos de difusión por imágenes de resonancia magnética nuclear con machine learning
610 - Medicina y salud
Imagen de Difusión por Resonancia Magnética
Procesamiento de Imagen Asistido por Computador
Diffusion Magnetic Resonance Imaging
Image Processing, Computer-Assisted
Imágenes por resonancia magnética
IRM
difusión tisular
movimiento incoherente intravóxel
aprendizaje automático
ADC
DWI
IVIM
Magnetic Resonance Imaging
MRI
tissue diffusion
Intravoxel Incoherent Motion
Machine Learning
title_short Análisis de modelos de difusión por imágenes de resonancia magnética nuclear con machine learning
title_full Análisis de modelos de difusión por imágenes de resonancia magnética nuclear con machine learning
title_fullStr Análisis de modelos de difusión por imágenes de resonancia magnética nuclear con machine learning
title_full_unstemmed Análisis de modelos de difusión por imágenes de resonancia magnética nuclear con machine learning
title_sort Análisis de modelos de difusión por imágenes de resonancia magnética nuclear con machine learning
dc.creator.fl_str_mv Prieto González, Leonar Steven
dc.contributor.advisor.none.fl_str_mv Agulles Pedros, Luis
dc.contributor.author.none.fl_str_mv Prieto González, Leonar Steven
dc.contributor.researchgroup.spa.fl_str_mv Grupo de Física Médica
dc.subject.ddc.spa.fl_str_mv 610 - Medicina y salud
topic 610 - Medicina y salud
Imagen de Difusión por Resonancia Magnética
Procesamiento de Imagen Asistido por Computador
Diffusion Magnetic Resonance Imaging
Image Processing, Computer-Assisted
Imágenes por resonancia magnética
IRM
difusión tisular
movimiento incoherente intravóxel
aprendizaje automático
ADC
DWI
IVIM
Magnetic Resonance Imaging
MRI
tissue diffusion
Intravoxel Incoherent Motion
Machine Learning
dc.subject.decs.spa.fl_str_mv Imagen de Difusión por Resonancia Magnética
Procesamiento de Imagen Asistido por Computador
dc.subject.decs.eng.fl_str_mv Diffusion Magnetic Resonance Imaging
Image Processing, Computer-Assisted
dc.subject.proposal.spa.fl_str_mv Imágenes por resonancia magnética
IRM
difusión tisular
movimiento incoherente intravóxel
aprendizaje automático
dc.subject.proposal.eng.fl_str_mv ADC
DWI
IVIM
Magnetic Resonance Imaging
MRI
tissue diffusion
Intravoxel Incoherent Motion
Machine Learning
description ilustraciones, fotografías, gráficas
publishDate 2022
dc.date.accessioned.none.fl_str_mv 2022-08-25T20:20:41Z
dc.date.available.none.fl_str_mv 2022-08-25T20:20:41Z
dc.date.issued.none.fl_str_mv 2022-05
dc.type.spa.fl_str_mv Trabajo de grado - Maestría
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/masterThesis
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/acceptedVersion
dc.type.content.spa.fl_str_mv Text
dc.type.redcol.spa.fl_str_mv http://purl.org/redcol/resource_type/TM
status_str acceptedVersion
dc.identifier.uri.none.fl_str_mv https://repositorio.unal.edu.co/handle/unal/82118
dc.identifier.instname.spa.fl_str_mv Universidad Nacional de Colombia
dc.identifier.reponame.spa.fl_str_mv Repositorio Institucional Universidad Nacional de Colombia
dc.identifier.repourl.spa.fl_str_mv https://repositorio.unal.edu.co/
url https://repositorio.unal.edu.co/handle/unal/82118
https://repositorio.unal.edu.co/
identifier_str_mv Universidad Nacional de Colombia
Repositorio Institucional Universidad Nacional de Colombia
dc.language.iso.spa.fl_str_mv spa
language spa
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dc.rights.spa.fl_str_mv Derechos reservados al autor, 2022
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.license.spa.fl_str_mv Reconocimiento 4.0 Internacional
dc.rights.uri.spa.fl_str_mv http://creativecommons.org/licenses/by-nc/4.0/
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv Reconocimiento 4.0 Internacional
Derechos reservados al autor, 2022
http://creativecommons.org/licenses/by-nc/4.0/
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.extent.spa.fl_str_mv x, 76 páginas
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Universidad Nacional de Colombia
dc.publisher.program.spa.fl_str_mv Bogotá - Ciencias - Maestría en Física Médica
dc.publisher.department.spa.fl_str_mv Departamento de Física
dc.publisher.faculty.spa.fl_str_mv Facultad de Ciencias
dc.publisher.place.spa.fl_str_mv Bogotá, Colombia
dc.publisher.branch.spa.fl_str_mv Universidad Nacional de Colombia - Sede Bogotá
institution Universidad Nacional de Colombia
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https://repositorio.unal.edu.co/bitstream/unal/82118/2/1018452370.2022.pdf
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spelling Reconocimiento 4.0 InternacionalDerechos reservados al autor, 2022http://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Agulles Pedros, Luis2c8db60360320997af52663ab8100dbbPrieto González, Leonar Steven50a9aaea95dec94ffb1f688ee39fa16dGrupo de Física Médica2022-08-25T20:20:41Z2022-08-25T20:20:41Z2022-05https://repositorio.unal.edu.co/handle/unal/82118Universidad Nacional de ColombiaRepositorio Institucional Universidad Nacional de Colombiahttps://repositorio.unal.edu.co/ilustraciones, fotografías, gráficasEn este trabajo se presenta la caracterización de las curvas de atenuación por difusión vóxel a vóxel de 4 conjuntos de imágenes (uno de próstata, dos de cerebro humano y uno de cerebro ex vivo de una neoplasia benigna). Esta caracterización incluye la determinación de los valores de difusión (D), pseudo-difusión (D∗), perfusión (f) y curtosis (K) usando los métodos de ADC (mono-exponencial) e IVIM (bi-exponencial) con y sin curtosis. Estos valores son utilizados como referencia para entrenar y probar la validez de varios algoritmos de machine learning (ML) que permiten disminuir el tiempo en la caracterización de la atenuación. Para decidir si en un vóxel existe difusión se implementan algoritmos de clasificación (Extra-Tree Classifier (ETC), Regresión logística (LR), C-Support vector (SVC), Extra-Gradient Boost (XGB) y perceptron multicapa (MLP)), evaluados mediante la precisión y el test AUC. Mientras que para estimar los parámetros característicos se implementan métodos de regresión (Regresión lineal (LinR), regr. polinómica (Poly), XGB, Ridge, Lasso, Random Forest (RF), ElasticNet y support-vector machine (SVM)) que son evaluados mediante diferentes métricas de regresión, particularmente, la raíz del error cuadrático medio de la validación cruzada (RMSE CV). El objetivo de este trabajo es aplicar estas herramientas de ML para el análisis de difusión por imágenes de resonancia magnética. Se obtuvieron como mejores clasificadores el ETC y el MLP con una precisión del 94.1 % y 91.7 % respectivamente. Para la estimación de parámetros el mejor algoritmo fue RF; D posee un RMSECV del 8.39 %, D∗ del 3.57 %, f con 4.52 % y K con 3.53 %. Aunque estos resultados pueden ser considerados satisfactorios, es posible que otros algoritmos que no se tuvieron en cuenta en este trabajo puedan reportar un mejor desempeño. El tiempo promedio que los algoritmos de ML tardan en caracterizar 100.000 vóxeles es 18, 998 ± 0, 135 s mientras que mediante métodos convencionales es de 4408 ± 351 s.In this work we present the characterization of the voxel-by-voxel diffusion attenuation curves of 4 sets of images (one from the prostate, two from the human brain and one from the ex vivo brain of a mini pig). This characterization includes the determination of the values of diffusion (D), pseudo-diffusion (D∗), perfusion (f), and kurtosis (K); using ADC (mono-exponential) and IVIM (bi-exponential) considering kurtosis when convenient. These values are used as a reference to train and test the validity of several machine learning (ML) algorithms that allow to reduce the CPU time to characterize the attenuation curves. To decide if there is diffusion in a voxel, classification algorithms are implemented; (Extra-Tree Classifier (ETC), Logistic Regression (LR), C-Support Vector (SVC), Extra-Gradient Boost (XGB) and Multilayer Perceptron (MLP)), were evaluated by precision and the AUC tests. On the other hand, regression methods; (Linear Regres sion (LinR), Polynomial Regr. (Poly), XGB, Ridge, Lasso, Random Forest (RF), Elastic Net and Support-Vector Machines (SVM)) are implemented to estimate the characteristic parameters and are evaluated using different regression metrics, particularly, root mean square error of cross-validation (RMSECV). The main objective of this work is to apply the se ML tools for diffusion analysis in magnetic resonance images. The ETC and the MLP showed the best classifiers with accuracies of 94.1 % and 91.7 %, respectively. For parame ters estimation, the best algorithm was RF; D has an RMSECV of 8.39 %, D∗ of 3.57 %, f of 4.52 % and K of 3.53 %. Although these results can be considered satisfactory, it is possi ble that other algorithms that were not taken into account in this work may report better performance.The average time that ML algorithms take to characterize 100.000 voxels is 18,998 ± 0,135 s while using conventional methods it is 4408 ± 351 s.MaestríaMagíster en Física MédicaRadiología e Imágenes Diagnósticasx, 76 páginasapplication/pdfspaUniversidad Nacional de ColombiaBogotá - Ciencias - Maestría en Física MédicaDepartamento de FísicaFacultad de CienciasBogotá, ColombiaUniversidad Nacional de Colombia - Sede Bogotá610 - Medicina y saludImagen de Difusión por Resonancia MagnéticaProcesamiento de Imagen Asistido por ComputadorDiffusion Magnetic Resonance ImagingImage Processing, Computer-AssistedImágenes por resonancia magnéticaIRMdifusión tisularmovimiento incoherente intravóxelaprendizaje automáticoADCDWIIVIMMagnetic Resonance ImagingMRItissue diffusionIntravoxel Incoherent MotionMachine LearningAnálisis de modelos de difusión por imágenes de resonancia magnética nuclear con machine learningAnalysis of nuclear magnetic resonance imaging diffusion models using machine learningTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/acceptedVersionTexthttp://purl.org/redcol/resource_type/TMValerij G. Kiselev. Fundamentals of diffusion mri physics. NMR in biomedicine, 30, 3 2017.Denis Le Bihan. What can we see with ivim mri? NeuroImage, 187:56–67, 2 2019.Mara Cercignani and Mark A. Horsfield. The physical basis of diffusion-weighted mri. Journal of the neurological sciences, 186 Suppl 1, 5 2001.Radiopaedia.org. Diffusion-weighted imaging — radiology reference article —, 2021.Laura Andrea Pastor Luque and Luis Agulles Pedros. Modelación de difusión en irm, 2020.Denis Le Bihan. Apparent diffusion coefficient and beyond: What diffusion mr imaging can tell us about tissue structure. https://doi.org/10.1148/radiol.13130420, 268:318–322, 8 2013.Carmelo Messina, Rodolfo Bignone, Alberto Bruno, Antonio Bruno, Federico Bruno, Marco Calandri, Damiano Caruso, Pietro Coppolino, Riccardo De Robertis, Francesco Gentili, Irene Grazzini, Raffaele Natella, Paola Scalise, Antonio Barile, Roberto Grassi, and Domenico Albano. Diffusion-weighted imaging in oncology: An update. 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