Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods

Ilustraciones, fotografías a color, imágenes, gráficas

Autores:
Arias Vesga, Christian Leonardo
Tipo de recurso:
Fecha de publicación:
2022
Institución:
Universidad Nacional de Colombia
Repositorio:
Universidad Nacional de Colombia
Idioma:
eng
OAI Identifier:
oai:repositorio.unal.edu.co:unal/82925
Acceso en línea:
https://repositorio.unal.edu.co/handle/unal/82925
https://repositorio.unal.edu.co/
Palabra clave:
620 - Ingeniería y operaciones afines::628 - Ingeniería sanitaria
000 - Ciencias de la computación, información y obras generales::004 - Procesamiento de datos Ciencia de los computadores
Patología
Pathology
Células - patología
Cells - pathology
Enfermedad del cáncer
histopatología
eliminación de señal de ruido
transformación Noiselet
señal de núcleos
cancer disease
histopathology
noise signal removal
nuclei signal
Noiselet transformation
Rights
openAccess
License
Reconocimiento 4.0 Internacional
id UNACIONAL2_85d30dcacca2eea3af45f48051baea91
oai_identifier_str oai:repositorio.unal.edu.co:unal/82925
network_acronym_str UNACIONAL2
network_name_str Universidad Nacional de Colombia
repository_id_str
dc.title.eng.fl_str_mv Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
dc.title.translated.spa.fl_str_mv Caracterización de tejidos no nucleares de imágenes histopatológicas: un paso de procesamiento para mejorar los métodos de segmentación de núcleos
title Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
spellingShingle Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
620 - Ingeniería y operaciones afines::628 - Ingeniería sanitaria
000 - Ciencias de la computación, información y obras generales::004 - Procesamiento de datos Ciencia de los computadores
Patología
Pathology
Células - patología
Cells - pathology
Enfermedad del cáncer
histopatología
eliminación de señal de ruido
transformación Noiselet
señal de núcleos
cancer disease
histopathology
noise signal removal
nuclei signal
Noiselet transformation
title_short Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
title_full Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
title_fullStr Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
title_full_unstemmed Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
title_sort Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
dc.creator.fl_str_mv Arias Vesga, Christian Leonardo
dc.contributor.advisor.none.fl_str_mv Romero Castro, Edgar Eduardo
dc.contributor.author.none.fl_str_mv Arias Vesga, Christian Leonardo
dc.contributor.educationalvalidator.none.fl_str_mv Moncayo Martinez Ricardo Alexander
dc.contributor.researchgroup.spa.fl_str_mv Cim@Lab
dc.subject.ddc.spa.fl_str_mv 620 - Ingeniería y operaciones afines::628 - Ingeniería sanitaria
000 - Ciencias de la computación, información y obras generales::004 - Procesamiento de datos Ciencia de los computadores
topic 620 - Ingeniería y operaciones afines::628 - Ingeniería sanitaria
000 - Ciencias de la computación, información y obras generales::004 - Procesamiento de datos Ciencia de los computadores
Patología
Pathology
Células - patología
Cells - pathology
Enfermedad del cáncer
histopatología
eliminación de señal de ruido
transformación Noiselet
señal de núcleos
cancer disease
histopathology
noise signal removal
nuclei signal
Noiselet transformation
dc.subject.mesh.spa.fl_str_mv Patología
dc.subject.mesh.eng.fl_str_mv Pathology
dc.subject.lemb.spa.fl_str_mv Células - patología
dc.subject.lemb.eng.fl_str_mv Cells - pathology
dc.subject.proposal.spa.fl_str_mv Enfermedad del cáncer
histopatología
eliminación de señal de ruido
transformación Noiselet
señal de núcleos
dc.subject.proposal.eng.fl_str_mv cancer disease
histopathology
noise signal removal
nuclei signal
dc.subject.proposal.none.fl_str_mv Noiselet transformation
description Ilustraciones, fotografías a color, imágenes, gráficas
publishDate 2022
dc.date.issued.none.fl_str_mv 2022
dc.date.accessioned.none.fl_str_mv 2023-01-13T20:00:00Z
dc.date.available.none.fl_str_mv 2023-01-13T20:00:00Z
dc.type.spa.fl_str_mv Trabajo de grado - Maestría
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/masterThesis
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/acceptedVersion
dc.type.content.spa.fl_str_mv Text
dc.type.redcol.spa.fl_str_mv http://purl.org/redcol/resource_type/TM
status_str acceptedVersion
dc.identifier.uri.none.fl_str_mv https://repositorio.unal.edu.co/handle/unal/82925
dc.identifier.instname.spa.fl_str_mv Universidad Nacional de Colombia
dc.identifier.repo.none.fl_str_mv Repositorio Institucional Universidad Nacional de Colombia
dc.identifier.repourl.spa.fl_str_mv https://repositorio.unal.edu.co/
url https://repositorio.unal.edu.co/handle/unal/82925
https://repositorio.unal.edu.co/
identifier_str_mv Universidad Nacional de Colombia
Repositorio Institucional Universidad Nacional de Colombia
dc.language.iso.spa.fl_str_mv eng
language eng
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dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.license.spa.fl_str_mv Reconocimiento 4.0 Internacional
dc.rights.uri.spa.fl_str_mv http://creativecommons.org/licenses/by/4.0/
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv Reconocimiento 4.0 Internacional
http://creativecommons.org/licenses/by/4.0/
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dc.format.extent.spa.fl_str_mv xi. 37 páginas
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dc.publisher.spa.fl_str_mv Universidad Nacional de Colombia
dc.publisher.program.spa.fl_str_mv Bogotá - Medicina - Maestría en Ingeniería Biomédica
dc.publisher.faculty.spa.fl_str_mv Facultad de Medicina
dc.publisher.place.spa.fl_str_mv Bogotá, Colombia
dc.publisher.branch.spa.fl_str_mv Universidad Nacional de Colombia - Sede Bogotá
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spelling Reconocimiento 4.0 Internacionalhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Romero Castro, Edgar Eduardod49b2499bdf2c07e42f8b4dc9715ef18Arias Vesga, Christian Leonardobcd0671454593ab47534774c86da92bcMoncayo Martinez Ricardo AlexanderCim@Lab2023-01-13T20:00:00Z2023-01-13T20:00:00Z2022https://repositorio.unal.edu.co/handle/unal/82925Universidad Nacional de ColombiaRepositorio Institucional Universidad Nacional de Colombiahttps://repositorio.unal.edu.co/Ilustraciones, fotografías a color, imágenes, gráficasEste estudio presenta una novedosa estrategia para caracterizar y eliminar la señal no nuclear (ruido) en las imágenes histopatológicas teñidas con hematoxilina y eosina (H&E), un paso de preprocesamiento para mejorar los métodos tradicionales de segmentación de núcleos. Cualquier estructura no nuclear es mapeada a un espacio de Noiselet a diferentes niveles de resolución, donde un clasificador es entrenado para reconocer los coeficientes de Noiselet de esta proyección. El enfoque propuesto se evaluó con dos conjuntos de datos de múltiples órganos anotados manualmente, comparando la segmentación de los núcleos obtenida por un algoritmo de Watershed más el enfoque presentado con el método de Watershed solamente. (Texto tomado de la fuente)This study presents a novel strategy to characterize and remove non-nuclei signal (noise) in histopathological images stained with hematoxylin and eosin (H&E), a preprocessing step to improve traditional nuclei segmentation methods. Any non nuclei structure is mapped to a Noiselet space at different resolution levels, where a classic classifier is trained to recognize the Noiselet coefficients of this projection. The proposed approach was evaluated with two multi-organ datasets manually annotated, comparing the nuclei segmentation obtained by a Watershed algorithm plus the presented approach against the watershed method alone.MaestríaDigital Pathologyxi. 37 páginasapplication/pdfengUniversidad Nacional de ColombiaBogotá - Medicina - Maestría en Ingeniería BiomédicaFacultad de MedicinaBogotá, ColombiaUniversidad Nacional de Colombia - Sede Bogotá620 - Ingeniería y operaciones afines::628 - Ingeniería sanitaria000 - Ciencias de la computación, información y obras generales::004 - Procesamiento de datos Ciencia de los computadoresPatologíaPathologyCélulas - patologíaCells - pathologyEnfermedad del cáncerhistopatologíaeliminación de señal de ruidotransformación Noiseletseñal de núcleoscancer diseasehistopathologynoise signal removalnuclei signalNoiselet transformationNon-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation MethodsCaracterización de tejidos no nucleares de imágenes histopatológicas: un paso de procesamiento para mejorar los métodos de segmentación de núcleosTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/acceptedVersionTexthttp://purl.org/redcol/resource_type/TMJ. 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Wen, “Generative adversarial training for weakly supervised nuclei instance segmentation,” in 2020 IEEE International Conference on Systems, Man, and Cybernetics (SMC), pp. 3649–3654, IEEE, 2020.BibliotecariosEstudiantesInvestigadoresMaestrosPersonal de apoyo escolarORIGINAL80853178.2022.pdf80853178.2022.pdfTesis de Ingeniería Biomédicaapplication/pdf11638942https://repositorio.unal.edu.co/bitstream/unal/82925/4/80853178.2022.pdf68090475c051e180f9b8a5eb1ea4996aMD54LICENSElicense.txtlicense.txttext/plain; charset=utf-85879https://repositorio.unal.edu.co/bitstream/unal/82925/5/license.txteb34b1cf90b7e1103fc9dfd26be24b4aMD55unal/82925oai:repositorio.unal.edu.co:unal/829252023-02-13 14:42:30.778Repositorio Institucional Universidad Nacional de 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