Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods

Ilustraciones, fotografías a color, imágenes, gráficas

Autores:: Arias Vesga, Christian Leonardo

Tipo de recurso:

Fecha de publicación:: 2022

Institución:: Universidad Nacional de Colombia

Repositorio:: Universidad Nacional de Colombia

Idioma:: eng

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repository_id_str
dc.title.eng.fl_str_mv	Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
dc.title.translated.spa.fl_str_mv	Caracterización de tejidos no nucleares de imágenes histopatológicas: un paso de procesamiento para mejorar los métodos de segmentación de núcleos
title	Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
spellingShingle	Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods 620 - Ingeniería y operaciones afines::628 - Ingeniería sanitaria 000 - Ciencias de la computación, información y obras generales::004 - Procesamiento de datos Ciencia de los computadores Patología Pathology Células - patología Cells - pathology Enfermedad del cáncer histopatología eliminación de señal de ruido transformación Noiselet señal de núcleos cancer disease histopathology noise signal removal nuclei signal Noiselet transformation
title_short	Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
title_full	Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
title_fullStr	Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
title_full_unstemmed	Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
title_sort	Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods
dc.creator.fl_str_mv	Arias Vesga, Christian Leonardo
dc.contributor.advisor.none.fl_str_mv	Romero Castro, Edgar Eduardo
dc.contributor.author.none.fl_str_mv	Arias Vesga, Christian Leonardo
dc.contributor.educationalvalidator.none.fl_str_mv	Moncayo Martinez Ricardo Alexander
dc.contributor.researchgroup.spa.fl_str_mv	Cim@Lab
dc.subject.ddc.spa.fl_str_mv	620 - Ingeniería y operaciones afines::628 - Ingeniería sanitaria 000 - Ciencias de la computación, información y obras generales::004 - Procesamiento de datos Ciencia de los computadores
topic	620 - Ingeniería y operaciones afines::628 - Ingeniería sanitaria 000 - Ciencias de la computación, información y obras generales::004 - Procesamiento de datos Ciencia de los computadores Patología Pathology Células - patología Cells - pathology Enfermedad del cáncer histopatología eliminación de señal de ruido transformación Noiselet señal de núcleos cancer disease histopathology noise signal removal nuclei signal Noiselet transformation
dc.subject.mesh.spa.fl_str_mv	Patología
dc.subject.mesh.eng.fl_str_mv	Pathology
dc.subject.lemb.spa.fl_str_mv	Células - patología
dc.subject.lemb.eng.fl_str_mv	Cells - pathology
dc.subject.proposal.spa.fl_str_mv	Enfermedad del cáncer histopatología eliminación de señal de ruido transformación Noiselet señal de núcleos
dc.subject.proposal.eng.fl_str_mv	cancer disease histopathology noise signal removal nuclei signal
dc.subject.proposal.none.fl_str_mv	Noiselet transformation
description	Ilustraciones, fotografías a color, imágenes, gráficas
publishDate	2022
dc.date.issued.none.fl_str_mv	2022
dc.date.accessioned.none.fl_str_mv	2023-01-13T20:00:00Z
dc.date.available.none.fl_str_mv	2023-01-13T20:00:00Z
dc.type.spa.fl_str_mv	Trabajo de grado - Maestría
dc.type.driver.spa.fl_str_mv	info:eu-repo/semantics/masterThesis
dc.type.version.spa.fl_str_mv	info:eu-repo/semantics/acceptedVersion
dc.type.content.spa.fl_str_mv	Text
dc.type.redcol.spa.fl_str_mv	http://purl.org/redcol/resource_type/TM
status_str	acceptedVersion
dc.identifier.uri.none.fl_str_mv	https://repositorio.unal.edu.co/handle/unal/82925
dc.identifier.instname.spa.fl_str_mv	Universidad Nacional de Colombia
dc.identifier.repo.none.fl_str_mv	Repositorio Institucional Universidad Nacional de Colombia
dc.identifier.repourl.spa.fl_str_mv	https://repositorio.unal.edu.co/
url	https://repositorio.unal.edu.co/handle/unal/82925 https://repositorio.unal.edu.co/
identifier_str_mv	Universidad Nacional de Colombia Repositorio Institucional Universidad Nacional de Colombia
dc.language.iso.spa.fl_str_mv	eng
language	eng
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spelling	Reconocimiento 4.0 Internacionalhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Romero Castro, Edgar Eduardod49b2499bdf2c07e42f8b4dc9715ef18Arias Vesga, Christian Leonardobcd0671454593ab47534774c86da92bcMoncayo Martinez Ricardo AlexanderCim@Lab2023-01-13T20:00:00Z2023-01-13T20:00:00Z2022https://repositorio.unal.edu.co/handle/unal/82925Universidad Nacional de ColombiaRepositorio Institucional Universidad Nacional de Colombiahttps://repositorio.unal.edu.co/Ilustraciones, fotografías a color, imágenes, gráficasEste estudio presenta una novedosa estrategia para caracterizar y eliminar la señal no nuclear (ruido) en las imágenes histopatológicas teñidas con hematoxilina y eosina (H&E), un paso de preprocesamiento para mejorar los métodos tradicionales de segmentación de núcleos. Cualquier estructura no nuclear es mapeada a un espacio de Noiselet a diferentes niveles de resolución, donde un clasificador es entrenado para reconocer los coeficientes de Noiselet de esta proyección. El enfoque propuesto se evaluó con dos conjuntos de datos de múltiples órganos anotados manualmente, comparando la segmentación de los núcleos obtenida por un algoritmo de Watershed más el enfoque presentado con el método de Watershed solamente. (Texto tomado de la fuente)This study presents a novel strategy to characterize and remove non-nuclei signal (noise) in histopathological images stained with hematoxylin and eosin (H&E), a preprocessing step to improve traditional nuclei segmentation methods. Any non nuclei structure is mapped to a Noiselet space at different resolution levels, where a classic classifier is trained to recognize the Noiselet coefficients of this projection. The proposed approach was evaluated with two multi-organ datasets manually annotated, comparing the nuclei segmentation obtained by a Watershed algorithm plus the presented approach against the watershed method alone.MaestríaDigital Pathologyxi. 37 páginasapplication/pdfengUniversidad Nacional de ColombiaBogotá - Medicina - Maestría en Ingeniería BiomédicaFacultad de MedicinaBogotá, ColombiaUniversidad Nacional de Colombia - Sede Bogotá620 - Ingeniería y operaciones afines::628 - Ingeniería sanitaria000 - Ciencias de la computación, información y obras generales::004 - Procesamiento de datos Ciencia de los computadoresPatologíaPathologyCélulas - patologíaCells - pathologyEnfermedad del cáncerhistopatologíaeliminación de señal de ruidotransformación Noiseletseñal de núcleoscancer diseasehistopathologynoise signal removalnuclei signalNoiselet transformationNon-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation MethodsCaracterización de tejidos no nucleares de imágenes histopatológicas: un paso de procesamiento para mejorar los métodos de segmentación de núcleosTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/acceptedVersionTexthttp://purl.org/redcol/resource_type/TMJ. 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Wen, “Generative adversarial training for weakly supervised nuclei instance segmentation,” in 2020 IEEE International Conference on Systems, Man, and Cybernetics (SMC), pp. 3649–3654, IEEE, 2020.BibliotecariosEstudiantesInvestigadoresMaestrosPersonal de apoyo escolarORIGINAL80853178.2022.pdf80853178.2022.pdfTesis de Ingeniería Biomédicaapplication/pdf11638942https://repositorio.unal.edu.co/bitstream/unal/82925/4/80853178.2022.pdf68090475c051e180f9b8a5eb1ea4996aMD54LICENSElicense.txtlicense.txttext/plain; charset=utf-85879https://repositorio.unal.edu.co/bitstream/unal/82925/5/license.txteb34b1cf90b7e1103fc9dfd26be24b4aMD55THUMBNAIL80853178.2022.pdf.jpg80853178.2022.pdf.jpgGenerated Thumbnailimage/jpeg4646https://repositorio.unal.edu.co/bitstream/unal/82925/6/80853178.2022.pdf.jpgc61644d202c9a27f0a79eaf95fc8fe4aMD56unal/82925oai:repositorio.unal.edu.co:unal/829252024-08-14 23:42:24.713Repositorio Institucional Universidad Nacional de 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Non-Nuclei Tissue Characterization of Histopathological Images: A Processing Step to Improve Nuclei Segmentation Methods

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