Molecular Characterization and Genetic Diversity of Entomopathogenic Nematodes, Rhabditida: (Steinernematidae and Heterorhabditidae) in Valle del Cauca as a Source for Biological Control

Banana and plantain are edible fruit crops widespread in tropical and subtropical regions, with high importance as a source of energy, nutrients and incomes for lots of families in developing countries. The Musa genus comprises twenty-eight species where M. acuminata and M. balbisiana are the most i...

Full description

Autores:
Londoño Caicedo, Jorge Mario
Tipo de recurso:
Fecha de publicación:
2017
Institución:
Universidad Nacional de Colombia
Repositorio:
Universidad Nacional de Colombia
Idioma:
spa
OAI Identifier:
oai:repositorio.unal.edu.co:unal/60334
Acceso en línea:
https://repositorio.unal.edu.co/handle/unal/60334
http://bdigital.unal.edu.co/58666/
Palabra clave:
57 Ciencias de la vida; Biología / Life sciences; biology
63 Agricultura y tecnologías relacionadas / Agriculture
Banana weevil
Haplotype
Genetic Diversity
Cytochrome Oxidase I DNA
Ribosomal
DNA
Picudo del Banano
Haplotipo
Citocromo Oxidasa I
ADN Ribosomal
Rights
openAccess
License
Atribución-NoComercial 4.0 Internacional
id UNACIONAL2_7b92a4d426d060e9626d38f89d941aa6
oai_identifier_str oai:repositorio.unal.edu.co:unal/60334
network_acronym_str UNACIONAL2
network_name_str Universidad Nacional de Colombia
repository_id_str
dc.title.spa.fl_str_mv Molecular Characterization and Genetic Diversity of Entomopathogenic Nematodes, Rhabditida: (Steinernematidae and Heterorhabditidae) in Valle del Cauca as a Source for Biological Control
title Molecular Characterization and Genetic Diversity of Entomopathogenic Nematodes, Rhabditida: (Steinernematidae and Heterorhabditidae) in Valle del Cauca as a Source for Biological Control
spellingShingle Molecular Characterization and Genetic Diversity of Entomopathogenic Nematodes, Rhabditida: (Steinernematidae and Heterorhabditidae) in Valle del Cauca as a Source for Biological Control
57 Ciencias de la vida; Biología / Life sciences; biology
63 Agricultura y tecnologías relacionadas / Agriculture
Banana weevil
Haplotype
Genetic Diversity
Cytochrome Oxidase I DNA
Ribosomal
DNA
Picudo del Banano
Haplotipo
Citocromo Oxidasa I
ADN Ribosomal
title_short Molecular Characterization and Genetic Diversity of Entomopathogenic Nematodes, Rhabditida: (Steinernematidae and Heterorhabditidae) in Valle del Cauca as a Source for Biological Control
title_full Molecular Characterization and Genetic Diversity of Entomopathogenic Nematodes, Rhabditida: (Steinernematidae and Heterorhabditidae) in Valle del Cauca as a Source for Biological Control
title_fullStr Molecular Characterization and Genetic Diversity of Entomopathogenic Nematodes, Rhabditida: (Steinernematidae and Heterorhabditidae) in Valle del Cauca as a Source for Biological Control
title_full_unstemmed Molecular Characterization and Genetic Diversity of Entomopathogenic Nematodes, Rhabditida: (Steinernematidae and Heterorhabditidae) in Valle del Cauca as a Source for Biological Control
title_sort Molecular Characterization and Genetic Diversity of Entomopathogenic Nematodes, Rhabditida: (Steinernematidae and Heterorhabditidae) in Valle del Cauca as a Source for Biological Control
dc.creator.fl_str_mv Londoño Caicedo, Jorge Mario
dc.contributor.author.spa.fl_str_mv Londoño Caicedo, Jorge Mario
dc.contributor.spa.fl_str_mv Muñoz Florez, Jaime Eduardo
dc.subject.ddc.spa.fl_str_mv 57 Ciencias de la vida; Biología / Life sciences; biology
63 Agricultura y tecnologías relacionadas / Agriculture
topic 57 Ciencias de la vida; Biología / Life sciences; biology
63 Agricultura y tecnologías relacionadas / Agriculture
Banana weevil
Haplotype
Genetic Diversity
Cytochrome Oxidase I DNA
Ribosomal
DNA
Picudo del Banano
Haplotipo
Citocromo Oxidasa I
ADN Ribosomal
dc.subject.proposal.spa.fl_str_mv Banana weevil
Haplotype
Genetic Diversity
Cytochrome Oxidase I DNA
Ribosomal
DNA
Picudo del Banano
Haplotipo
Citocromo Oxidasa I
ADN Ribosomal
description Banana and plantain are edible fruit crops widespread in tropical and subtropical regions, with high importance as a source of energy, nutrients and incomes for lots of families in developing countries. The Musa genus comprises twenty-eight species where M. acuminata and M. balbisiana are the most important species for commercial purposes. However several diseases and pests affect the productivity and fruit quality generating considerable losses every year. Banana weevil complex species are one of the main responsible of such losses worldwide; nevertheless several attempts have been carried out to control banana weevil populations. Cosmopolites sordidus is the most frequent species reported worldwide and with more interest for population control. In the present study four banana weevil species (C. sordidus, Metamasius hemipterus, M. hebetatus, Polytus mellerborgii) were found associated to banana and plantain stands. Genetic analysis on banana weevil species, from mtDNA and nr DNA Loci, indicated a widespread of few haplotypes across 12 municipalities of Valle del Cauca, also a low number of alleles were found indicating a possible bottleneck mediated by human activities. dditionally a survey for entomopathogenic nematodes (EPN) associated to plantain and banana stands was made, were Steinernematids and Heterorhabditids species were found, however molecular characterization indicates a low genetic diversity in EPN isolates. Two nuclear Loci (ITS and LSU) were sequenced and employed for species identification, indicating that from 14 isolates obtained, 10 of them belonged to Steinernema carpocapsae and four to Heterorhabditis spp. For the latter there was contrasting results when either ITS or LSU región was employed for species identification, nevertheless a concatenated analysis showed the presence of two species, Heterorhabditis bacteriophora and Heterorhabditis sp. These indigenous EPN isolates could be promising for biological control of weevil banana complex species, since this isolates were found associated to plantain and banana stands and, together with the low genetic diversity found in weevil species, it is expected to develop strategies for pests management using EPN isolates obtained in the present study.
publishDate 2017
dc.date.issued.spa.fl_str_mv 2017
dc.date.accessioned.spa.fl_str_mv 2019-07-02T18:04:52Z
dc.date.available.spa.fl_str_mv 2019-07-02T18:04:52Z
dc.type.spa.fl_str_mv Trabajo de grado - Maestría
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/masterThesis
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/acceptedVersion
dc.type.content.spa.fl_str_mv Text
dc.type.redcol.spa.fl_str_mv http://purl.org/redcol/resource_type/TM
status_str acceptedVersion
dc.identifier.uri.none.fl_str_mv https://repositorio.unal.edu.co/handle/unal/60334
dc.identifier.eprints.spa.fl_str_mv http://bdigital.unal.edu.co/58666/
url https://repositorio.unal.edu.co/handle/unal/60334
http://bdigital.unal.edu.co/58666/
dc.language.iso.spa.fl_str_mv spa
language spa
dc.relation.ispartof.spa.fl_str_mv Universidad Nacional de Colombia Sede Palmira Facultad de Ciencias Agropecuarias Maestría en Ciencias Biológicas
Maestría en Ciencias Biológicas
dc.relation.references.spa.fl_str_mv Londoño Caicedo, Jorge Mario (2017) Molecular Characterization and Genetic Diversity of Entomopathogenic Nematodes, Rhabditida: (Steinernematidae and Heterorhabditidae) in Valle del Cauca as a Source for Biological Control. Maestría thesis, Universidad Nacional de Colombia - Sede Palmira.
dc.rights.spa.fl_str_mv Derechos reservados - Universidad Nacional de Colombia
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.license.spa.fl_str_mv Atribución-NoComercial 4.0 Internacional
dc.rights.uri.spa.fl_str_mv http://creativecommons.org/licenses/by-nc/4.0/
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv Atribución-NoComercial 4.0 Internacional
Derechos reservados - Universidad Nacional de Colombia
http://creativecommons.org/licenses/by-nc/4.0/
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.mimetype.spa.fl_str_mv application/pdf
institution Universidad Nacional de Colombia
bitstream.url.fl_str_mv https://repositorio.unal.edu.co/bitstream/unal/60334/1/Msc_Jorge_Mario_Londono.pdf
https://repositorio.unal.edu.co/bitstream/unal/60334/2/Msc_Jorge_Mario_Londono.pdf.jpg
bitstream.checksum.fl_str_mv 3139cacc232c0c9b17ff80e3e1e165ab
a02c75a7a0859248cbed74fec2ff6617
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
repository.name.fl_str_mv Repositorio Institucional Universidad Nacional de Colombia
repository.mail.fl_str_mv repositorio_nal@unal.edu.co
_version_ 1814089252412063744
spelling Atribución-NoComercial 4.0 InternacionalDerechos reservados - Universidad Nacional de Colombiahttp://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Muñoz Florez, Jaime EduardoLondoño Caicedo, Jorge Marioc6c7f5c8-0dc1-4877-90fd-07bfb5258ed53002019-07-02T18:04:52Z2019-07-02T18:04:52Z2017https://repositorio.unal.edu.co/handle/unal/60334http://bdigital.unal.edu.co/58666/Banana and plantain are edible fruit crops widespread in tropical and subtropical regions, with high importance as a source of energy, nutrients and incomes for lots of families in developing countries. The Musa genus comprises twenty-eight species where M. acuminata and M. balbisiana are the most important species for commercial purposes. However several diseases and pests affect the productivity and fruit quality generating considerable losses every year. Banana weevil complex species are one of the main responsible of such losses worldwide; nevertheless several attempts have been carried out to control banana weevil populations. Cosmopolites sordidus is the most frequent species reported worldwide and with more interest for population control. In the present study four banana weevil species (C. sordidus, Metamasius hemipterus, M. hebetatus, Polytus mellerborgii) were found associated to banana and plantain stands. Genetic analysis on banana weevil species, from mtDNA and nr DNA Loci, indicated a widespread of few haplotypes across 12 municipalities of Valle del Cauca, also a low number of alleles were found indicating a possible bottleneck mediated by human activities. dditionally a survey for entomopathogenic nematodes (EPN) associated to plantain and banana stands was made, were Steinernematids and Heterorhabditids species were found, however molecular characterization indicates a low genetic diversity in EPN isolates. Two nuclear Loci (ITS and LSU) were sequenced and employed for species identification, indicating that from 14 isolates obtained, 10 of them belonged to Steinernema carpocapsae and four to Heterorhabditis spp. For the latter there was contrasting results when either ITS or LSU región was employed for species identification, nevertheless a concatenated analysis showed the presence of two species, Heterorhabditis bacteriophora and Heterorhabditis sp. These indigenous EPN isolates could be promising for biological control of weevil banana complex species, since this isolates were found associated to plantain and banana stands and, together with the low genetic diversity found in weevil species, it is expected to develop strategies for pests management using EPN isolates obtained in the present study.Resumen: El plátano y el banano son frutos comestibles cultivados en las regiones tropicales y subtropicales, presentan importancia como fuente de energía, nutrientes e ingresos económicos para muchas familias de países en desarrollo. El género Musa comprende 28 especies siendo M. acuminata y M. balbisiana las especies mas importantes para propósitos comerciales. Sin embargo diversas enfermedades y pestes afectan la productividad y calidad del fruto generando pérdidas considerables cada año. El complejo de especies del picudo del banano son uno de los principales responsables de tales pérdidas a nivel mundial. No obstante varios intentos se han llevado a cabo para controlar las poblaciones del picudo del banano. Cosmopolites sordidus es la especie mas frecuente reportada a nivel mundial y en la cual mayor interés se ha llevado a cabo para su control. En el presente estudio cuatro especies de picudo del banano (C. sordidus, Metamasius hemipterus, M. hebetatus, Polytus mellerborgii) se encontraron asociadas a cultivos de plátano y banano. Análisis genéticos en especies de picudos, a partir de Loci mitocondrial y nuclear, indicaron un amplia distribución de pocos haplotipos en 12 municipios evaluados en el Valle del Cauca, también un bajo numero de alelos fue identificado indicando un posible efecto cuello de botella mediado por las actividades humanas. Adicionalmente se realizaron evaluaciones para obtención de nematodos entomopatógenos (NEP) asociados a plantaciones de plátano y banano, donde se encontraron especies de Steinernematidos y Heterorhabditidos, sin embargo la caracterización molecular mostró baja diversidad genética en los aislamientos. Dos Loci nucleares (ITS y LSU) fueron secuenciados y empleados para la identificación de especies, indicando que a partir de 14 aislamientos obtenidos 10 pertenecieron a Steinernema carpocapsae y cuatro a Heterorhabditis spp. Para este último hubo resultados contrastantes respecto a las regiones ITS o LSU y la asignación de especies, no obstante un análisis concatenado mostró la presencia de dos especies, Heterorhabditis bacteriophora y Heterorhabditis sp. Estos asilamientos nativos podrían ser promisorios para el control biológico de las especies del complejo de picudos, ya que fueron hallados en plantaciones de plátano y banano y, junto a la baja diversidad genética identificada en las especies del complejo de picudos, se espera desarrollar estrategias para el control de pestes usando los aislamientos de NEP obtenidos en este estudio.Maestríaapplication/pdfspaUniversidad Nacional de Colombia Sede Palmira Facultad de Ciencias Agropecuarias Maestría en Ciencias BiológicasMaestría en Ciencias BiológicasLondoño Caicedo, Jorge Mario (2017) Molecular Characterization and Genetic Diversity of Entomopathogenic Nematodes, Rhabditida: (Steinernematidae and Heterorhabditidae) in Valle del Cauca as a Source for Biological Control. Maestría thesis, Universidad Nacional de Colombia - Sede Palmira.57 Ciencias de la vida; Biología / Life sciences; biology63 Agricultura y tecnologías relacionadas / AgricultureBanana weevilHaplotypeGenetic DiversityCytochrome Oxidase I DNARibosomalDNAPicudo del BananoHaplotipoCitocromo Oxidasa IADN RibosomalMolecular Characterization and Genetic Diversity of Entomopathogenic Nematodes, Rhabditida: (Steinernematidae and Heterorhabditidae) in Valle del Cauca as a Source for Biological ControlTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/acceptedVersionTexthttp://purl.org/redcol/resource_type/TMORIGINALMsc_Jorge_Mario_Londono.pdfapplication/pdf4372948https://repositorio.unal.edu.co/bitstream/unal/60334/1/Msc_Jorge_Mario_Londono.pdf3139cacc232c0c9b17ff80e3e1e165abMD51THUMBNAILMsc_Jorge_Mario_Londono.pdf.jpgMsc_Jorge_Mario_Londono.pdf.jpgGenerated Thumbnailimage/jpeg6094https://repositorio.unal.edu.co/bitstream/unal/60334/2/Msc_Jorge_Mario_Londono.pdf.jpga02c75a7a0859248cbed74fec2ff6617MD52unal/60334oai:repositorio.unal.edu.co:unal/603342023-04-06 23:05:21.136Repositorio Institucional Universidad Nacional de Colombiarepositorio_nal@unal.edu.co