Female ageing alters oocyte DNA methylation, gene transcription and H3 lysine methylation. A single-cell study

Female reproductive ageing is associated with oocyte quality decline and increased risk of maternofoetal complications during early embryo implantation and pregnancy. DNA methylation is an important epigenetic mark involved in gene regulation that can be affected by environmental factors, such as ag...

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Autores:
Herrera Puerta, Erika Yamile
Tipo de recurso:
Doctoral thesis
Fecha de publicación:
2019
Institución:
Universidad Nacional de Colombia
Repositorio:
Universidad Nacional de Colombia
Idioma:
spa
OAI Identifier:
oai:repositorio.unal.edu.co:unal/76283
Acceso en línea:
https://repositorio.unal.edu.co/handle/unal/76283
http://bdigital.unal.edu.co/72473/
Palabra clave:
Epigenetics
Bisulphite
Germ cell
Epigenoma
Bisulfito,
Célula germinal
Infertilidad
Rights
openAccess
License
Atribución-NoComercial 4.0 Internacional
id UNACIONAL2_711bd5e01c05385ef8cfbfa3b5b78b31
oai_identifier_str oai:repositorio.unal.edu.co:unal/76283
network_acronym_str UNACIONAL2
network_name_str Universidad Nacional de Colombia
repository_id_str
dc.title.spa.fl_str_mv Female ageing alters oocyte DNA methylation, gene transcription and H3 lysine methylation. A single-cell study
title Female ageing alters oocyte DNA methylation, gene transcription and H3 lysine methylation. A single-cell study
spellingShingle Female ageing alters oocyte DNA methylation, gene transcription and H3 lysine methylation. A single-cell study
Epigenetics
Bisulphite
Germ cell
Epigenoma
Bisulfito,
Célula germinal
Infertilidad
title_short Female ageing alters oocyte DNA methylation, gene transcription and H3 lysine methylation. A single-cell study
title_full Female ageing alters oocyte DNA methylation, gene transcription and H3 lysine methylation. A single-cell study
title_fullStr Female ageing alters oocyte DNA methylation, gene transcription and H3 lysine methylation. A single-cell study
title_full_unstemmed Female ageing alters oocyte DNA methylation, gene transcription and H3 lysine methylation. A single-cell study
title_sort Female ageing alters oocyte DNA methylation, gene transcription and H3 lysine methylation. A single-cell study
dc.creator.fl_str_mv Herrera Puerta, Erika Yamile
dc.contributor.advisor.spa.fl_str_mv Camargo-Rodriguez, Delmis Omar (Thesis advisor)
dc.contributor.author.spa.fl_str_mv Herrera Puerta, Erika Yamile
dc.contributor.spa.fl_str_mv Kelsey, Gavin
dc.subject.proposal.spa.fl_str_mv Epigenetics
Bisulphite
Germ cell
Epigenoma
Bisulfito,
Célula germinal
Infertilidad
topic Epigenetics
Bisulphite
Germ cell
Epigenoma
Bisulfito,
Célula germinal
Infertilidad
description Female reproductive ageing is associated with oocyte quality decline and increased risk of maternofoetal complications during early embryo implantation and pregnancy. DNA methylation is an important epigenetic mark involved in gene regulation that can be affected by environmental factors, such as age and diet. The aim of this study was to assess oocyte methylome and transcriptome in order to identify age-associated changes that may in part explain the aged-associated decline in female fertility. Single oocytes were collected from young and old female mice. Parallel whole-genome bisulfite sequencing and RNA sequencing analysis was performed in individual cells in both groups. Results showed that DNA methylation is predominantly lost in differentially methylated domains. Gene expression of lowly expressed genes were also affected. A positive correlation was identified between gene expression and DNA methylation at gene bodies of specific developmental genes involved in BMP signalling pathways and extracellular matrix function. An immunostaining assay revealed that old oocytes present altered deposition of histone 3 lysine 4 tri-methylation (H3K4me3) and lysine 27 acetylation (H3K27ac), epigenetic modifications that are associated with active transcription. Furthermore, old oocytes presented irregular chromatin configuration and bigger nuclear size than their young counterpart. Overall, this study reveals that female age influences oocyte gene expression and DNA methylation, and moreover, leads to notable nuclear and cellular organizational changes in germinal vesicle oocytes.
publishDate 2019
dc.date.issued.spa.fl_str_mv 2019-05-23
dc.date.accessioned.spa.fl_str_mv 2020-03-30T06:17:38Z
dc.date.available.spa.fl_str_mv 2020-03-30T06:17:38Z
dc.type.spa.fl_str_mv Trabajo de grado - Doctorado
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/doctoralThesis
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/acceptedVersion
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dc.type.content.spa.fl_str_mv Text
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format http://purl.org/coar/resource_type/c_db06
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dc.identifier.uri.none.fl_str_mv https://repositorio.unal.edu.co/handle/unal/76283
dc.identifier.eprints.spa.fl_str_mv http://bdigital.unal.edu.co/72473/
url https://repositorio.unal.edu.co/handle/unal/76283
http://bdigital.unal.edu.co/72473/
dc.language.iso.spa.fl_str_mv spa
language spa
dc.relation.ispartof.spa.fl_str_mv Universidad Nacional de Colombia Sede Medellín Facultad de Ciencias Escuela de Biociencias
Escuela de Biociencias
dc.relation.haspart.spa.fl_str_mv 66 Ingeniería química y Tecnologías relacionadas/ Chemical engineering
dc.relation.references.spa.fl_str_mv Herrera Puerta, Erika Yamile (2019) Female ageing alters oocyte DNA methylation, gene transcription and H3 lysine methylation. A single-cell study. Doctorado thesis, Universidad Nacional de Colombia - Sede Medellín.
dc.rights.spa.fl_str_mv Derechos reservados - Universidad Nacional de Colombia
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.license.spa.fl_str_mv Atribución-NoComercial 4.0 Internacional
dc.rights.uri.spa.fl_str_mv http://creativecommons.org/licenses/by-nc/4.0/
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv Atribución-NoComercial 4.0 Internacional
Derechos reservados - Universidad Nacional de Colombia
http://creativecommons.org/licenses/by-nc/4.0/
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.mimetype.spa.fl_str_mv application/pdf
institution Universidad Nacional de Colombia
bitstream.url.fl_str_mv https://repositorio.unal.edu.co/bitstream/unal/76283/1/42160484.2019.pdf
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spelling Atribución-NoComercial 4.0 InternacionalDerechos reservados - Universidad Nacional de Colombiahttp://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Kelsey, GavinCamargo-Rodriguez, Delmis Omar (Thesis advisor)a23861fa-864a-475e-a404-20eccb8126ba-1Herrera Puerta, Erika Yamiled8ca8edc-357b-494f-9af3-71f62a9d0ed43002020-03-30T06:17:38Z2020-03-30T06:17:38Z2019-05-23https://repositorio.unal.edu.co/handle/unal/76283http://bdigital.unal.edu.co/72473/Female reproductive ageing is associated with oocyte quality decline and increased risk of maternofoetal complications during early embryo implantation and pregnancy. DNA methylation is an important epigenetic mark involved in gene regulation that can be affected by environmental factors, such as age and diet. The aim of this study was to assess oocyte methylome and transcriptome in order to identify age-associated changes that may in part explain the aged-associated decline in female fertility. Single oocytes were collected from young and old female mice. Parallel whole-genome bisulfite sequencing and RNA sequencing analysis was performed in individual cells in both groups. Results showed that DNA methylation is predominantly lost in differentially methylated domains. Gene expression of lowly expressed genes were also affected. A positive correlation was identified between gene expression and DNA methylation at gene bodies of specific developmental genes involved in BMP signalling pathways and extracellular matrix function. An immunostaining assay revealed that old oocytes present altered deposition of histone 3 lysine 4 tri-methylation (H3K4me3) and lysine 27 acetylation (H3K27ac), epigenetic modifications that are associated with active transcription. Furthermore, old oocytes presented irregular chromatin configuration and bigger nuclear size than their young counterpart. Overall, this study reveals that female age influences oocyte gene expression and DNA methylation, and moreover, leads to notable nuclear and cellular organizational changes in germinal vesicle oocytes.Resumen: El envejecimiento reproductivo femenino se asocia con baja calidad de los ovocitos y complicaciones en la implantación y gestación. La metilación del DNA es una marca epigenética ampliamente estudiada involucrada en la regulación génica y es afectada por factores ambientales como la dieta y la edad. El objetivo de este estudio era evaluar el metiloma y el transcriptoma de ovocitos con el fin de identificar aspectos asociados a la disminución de la fertilidad femenina con la edad. Se colectaron ovocitos individuales de ratonas jóvenes y viejas. Para cada muestra se realizó un estudio de amplificación del genoma completo tratado con bisulfito, en paralelo con la secuenciación del transcriptoma. Los resultados obtenidos mostraron que la metilación del DNA disminuye en amplias regiones con metilación diferencial en los ovocitos viejos, al igual que la expresión de genes específicos del desarrollo también se ve afectada. Se encontró una relación positiva entre la metilación intra-génica y la expresión de genes asociados a la vía de señalización de BMP (proteína morfogénica de hueso, BMP por sus siglas en inglés) y el funcionamiento de la matriz extracelular. En un ensayo de inmunofluorescencia se encontró que los ovocitos viejos tienen alterada la cantidad de lisina 4 tri-metilada y lisina 27 acetilada en la histona 3 (H3K4me3 y H3K27ac respectivamente), ambas marcas asociadas con regiones transcripcionalmente activas. El tamaño del citoplasma y del núcleo son mayores en los ovocitos viejos que en los jóvenes. En conclusión, en este estudio se encontró que la edad femenina afecta significativamente la expresión génica y la metilación de DNA en los ovocitos, y adicionalmente conlleva cambios celulares a nivel estructuralDoctoradoapplication/pdfspaUniversidad Nacional de Colombia Sede Medellín Facultad de Ciencias Escuela de BiocienciasEscuela de Biociencias66 Ingeniería química y Tecnologías relacionadas/ Chemical engineeringHerrera Puerta, Erika Yamile (2019) Female ageing alters oocyte DNA methylation, gene transcription and H3 lysine methylation. A single-cell study. Doctorado thesis, Universidad Nacional de Colombia - Sede Medellín.Female ageing alters oocyte DNA methylation, gene transcription and H3 lysine methylation. 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