QTL identification for cassava bacterial blight resistance under natural infection conditions
Cassava, Manihot esculenta Crantz, represents the main food source for more than one billion people. Cassava’s production is affected by several diseases, one of the most serious is cassava bacterial blight (CBB) caused by Xanthomonas axonopodis pv. manihotis (Xam). A quantitative trait loci (QTL) a...
- Autores:
-
Soto Sedano, Carolina
Mora Moreno, Rubén Eduardo
Calle, Fernando
López Carrascal, Camilo Ernesto
- Tipo de recurso:
- Article of journal
- Fecha de publicación:
- 2017
- Institución:
- Universidad Nacional de Colombia
- Repositorio:
- Universidad Nacional de Colombia
- Idioma:
- spa
- OAI Identifier:
- oai:repositorio.unal.edu.co:unal/61159
- Acceso en línea:
- https://repositorio.unal.edu.co/handle/unal/61159
http://bdigital.unal.edu.co/59967/
- Palabra clave:
- 57 Ciencias de la vida; Biología / Life sciences; biology
Cassava
molecular marker
QTL
resistance
SNPs
Xanthomonas axonopodis pv. manihotis.
marcador molecular
QTL
resistencia
SNPs
Xanthomonas axonopodis pv. manihotis
yuca.
- Rights
- openAccess
- License
- Atribución-NoComercial 4.0 Internacional
| id |
UNACIONAL2_6e89e5cd384d3b804c6ae4f1c0e3ca30 |
|---|---|
| oai_identifier_str |
oai:repositorio.unal.edu.co:unal/61159 |
| network_acronym_str |
UNACIONAL2 |
| network_name_str |
Universidad Nacional de Colombia |
| repository_id_str |
|
| dc.title.spa.fl_str_mv |
QTL identification for cassava bacterial blight resistance under natural infection conditions |
| title |
QTL identification for cassava bacterial blight resistance under natural infection conditions |
| spellingShingle |
QTL identification for cassava bacterial blight resistance under natural infection conditions 57 Ciencias de la vida; Biología / Life sciences; biology Cassava molecular marker QTL resistance SNPs Xanthomonas axonopodis pv. manihotis. marcador molecular QTL resistencia SNPs Xanthomonas axonopodis pv. manihotis yuca. |
| title_short |
QTL identification for cassava bacterial blight resistance under natural infection conditions |
| title_full |
QTL identification for cassava bacterial blight resistance under natural infection conditions |
| title_fullStr |
QTL identification for cassava bacterial blight resistance under natural infection conditions |
| title_full_unstemmed |
QTL identification for cassava bacterial blight resistance under natural infection conditions |
| title_sort |
QTL identification for cassava bacterial blight resistance under natural infection conditions |
| dc.creator.fl_str_mv |
Soto Sedano, Carolina Mora Moreno, Rubén Eduardo Calle, Fernando López Carrascal, Camilo Ernesto |
| dc.contributor.author.spa.fl_str_mv |
Soto Sedano, Carolina Mora Moreno, Rubén Eduardo Calle, Fernando López Carrascal, Camilo Ernesto |
| dc.subject.ddc.spa.fl_str_mv |
57 Ciencias de la vida; Biología / Life sciences; biology |
| topic |
57 Ciencias de la vida; Biología / Life sciences; biology Cassava molecular marker QTL resistance SNPs Xanthomonas axonopodis pv. manihotis. marcador molecular QTL resistencia SNPs Xanthomonas axonopodis pv. manihotis yuca. |
| dc.subject.proposal.spa.fl_str_mv |
Cassava molecular marker QTL resistance SNPs Xanthomonas axonopodis pv. manihotis. marcador molecular QTL resistencia SNPs Xanthomonas axonopodis pv. manihotis yuca. |
| description |
Cassava, Manihot esculenta Crantz, represents the main food source for more than one billion people. Cassava’s production is affected by several diseases, one of the most serious is cassava bacterial blight (CBB) caused by Xanthomonas axonopodis pv. manihotis (Xam). A quantitative trait loci (QTL) analysis for CBB resistance was performed under natural infection conditions, using a mapping population of 99 full-sibs genotypes highly segregant and a SNP-based high dense genetic map. The phenotypic evaluation was carried out in Puerto López, Meta, Colombia, during the rainy season in 2015. Both resistant and susceptible transgressive segregants were detected in the mapping population. Through a non-parametric interval mapping analysis, two QTL were detected, explaining 10.9 and 12.6 % of phenotypic variance of resistance to field CBB. After a bioinformatics exploration four genes were identified in the QTL intervals. This work represents a contribution to the elucidation of the molecular bases of quantitative cassava resistance to Xam. |
| publishDate |
2017 |
| dc.date.issued.spa.fl_str_mv |
2017-01-01 |
| dc.date.accessioned.spa.fl_str_mv |
2019-07-02T20:04:35Z |
| dc.date.available.spa.fl_str_mv |
2019-07-02T20:04:35Z |
| dc.type.spa.fl_str_mv |
Artículo de revista |
| dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_2df8fbb1 |
| dc.type.driver.spa.fl_str_mv |
info:eu-repo/semantics/article |
| dc.type.version.spa.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_6501 |
| dc.type.coarversion.spa.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
| dc.type.content.spa.fl_str_mv |
Text |
| dc.type.redcol.spa.fl_str_mv |
http://purl.org/redcol/resource_type/ART |
| format |
http://purl.org/coar/resource_type/c_6501 |
| status_str |
publishedVersion |
| dc.identifier.issn.spa.fl_str_mv |
ISSN: 1900-1649 |
| dc.identifier.uri.none.fl_str_mv |
https://repositorio.unal.edu.co/handle/unal/61159 |
| dc.identifier.eprints.spa.fl_str_mv |
http://bdigital.unal.edu.co/59967/ |
| identifier_str_mv |
ISSN: 1900-1649 |
| url |
https://repositorio.unal.edu.co/handle/unal/61159 http://bdigital.unal.edu.co/59967/ |
| dc.language.iso.spa.fl_str_mv |
spa |
| language |
spa |
| dc.relation.spa.fl_str_mv |
https://revistas.unal.edu.co/index.php/actabiol/article/view/57951 |
| dc.relation.ispartof.spa.fl_str_mv |
Universidad Nacional de Colombia Revistas electrónicas UN Acta Biológica Colombiana Acta Biológica Colombiana |
| dc.relation.references.spa.fl_str_mv |
Soto Sedano, Carolina and Mora Moreno, Rubén Eduardo and Calle, Fernando and López Carrascal, Camilo Ernesto (2017) QTL identification for cassava bacterial blight resistance under natural infection conditions. Acta Biológica Colombiana, 22 (1). pp. 19-26. ISSN 1900-1649 |
| dc.rights.spa.fl_str_mv |
Derechos reservados - Universidad Nacional de Colombia |
| dc.rights.coar.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
| dc.rights.license.spa.fl_str_mv |
Atribución-NoComercial 4.0 Internacional |
| dc.rights.uri.spa.fl_str_mv |
http://creativecommons.org/licenses/by-nc/4.0/ |
| dc.rights.accessrights.spa.fl_str_mv |
info:eu-repo/semantics/openAccess |
| rights_invalid_str_mv |
Atribución-NoComercial 4.0 Internacional Derechos reservados - Universidad Nacional de Colombia http://creativecommons.org/licenses/by-nc/4.0/ http://purl.org/coar/access_right/c_abf2 |
| eu_rights_str_mv |
openAccess |
| dc.format.mimetype.spa.fl_str_mv |
application/pdf |
| dc.publisher.spa.fl_str_mv |
Universidad Nacional de Colombia - Sede Bogotá - Faculdad de Ciencias - Departamento de Biología |
| institution |
Universidad Nacional de Colombia |
| bitstream.url.fl_str_mv |
https://repositorio.unal.edu.co/bitstream/unal/61159/1/57951-313778-1-PB.pdf https://repositorio.unal.edu.co/bitstream/unal/61159/2/57951-313778-1-PB.pdf.jpg |
| bitstream.checksum.fl_str_mv |
6d5d82d4bb9e5048981616e1d948b272 2f08eba33c6fe4dd17ffb8ee62def0e9 |
| bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 |
| repository.name.fl_str_mv |
Repositorio Institucional Universidad Nacional de Colombia |
| repository.mail.fl_str_mv |
repositorio_nal@unal.edu.co |
| _version_ |
1814090039009738752 |
| spelling |
Atribución-NoComercial 4.0 InternacionalDerechos reservados - Universidad Nacional de Colombiahttp://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Soto Sedano, Carolinaa26a1a29-c9cc-4290-b49c-f450a532d2a2300Mora Moreno, Rubén Eduardoaeec94e3-969d-402d-ad2a-217f49433428300Calle, Fernando9e2e065e-4f0b-4a82-abd3-67c5fda13a8d300López Carrascal, Camilo Ernestoc1f555c1-29e2-49fb-9923-641e2519545c3002019-07-02T20:04:35Z2019-07-02T20:04:35Z2017-01-01ISSN: 1900-1649https://repositorio.unal.edu.co/handle/unal/61159http://bdigital.unal.edu.co/59967/Cassava, Manihot esculenta Crantz, represents the main food source for more than one billion people. Cassava’s production is affected by several diseases, one of the most serious is cassava bacterial blight (CBB) caused by Xanthomonas axonopodis pv. manihotis (Xam). A quantitative trait loci (QTL) analysis for CBB resistance was performed under natural infection conditions, using a mapping population of 99 full-sibs genotypes highly segregant and a SNP-based high dense genetic map. The phenotypic evaluation was carried out in Puerto López, Meta, Colombia, during the rainy season in 2015. Both resistant and susceptible transgressive segregants were detected in the mapping population. Through a non-parametric interval mapping analysis, two QTL were detected, explaining 10.9 and 12.6 % of phenotypic variance of resistance to field CBB. After a bioinformatics exploration four genes were identified in the QTL intervals. This work represents a contribution to the elucidation of the molecular bases of quantitative cassava resistance to Xam.La yuca, Manihot esculenta Crantz, representa la principal fuente de alimento para cerca de 1000 millones de personas. La producción de yuca se ve afectada por diversas enfermedades, una de las más serias es la bacteriosis vascular (CBB) causada por Xanthomonas axonopodis pv. manihotis (Xam). En este estudio se realizó un análisis de loci de rasgos cuantitativos (QTL) para la resistencia a CBB en condiciones naturales de infección, usando una población de mapeo constituida por 99 genotipos de hermanos completos segregantes y un mapa genético altamente denso basado en SNPs. La evaluación fenotípica se llevó a cabo en Puerto López (Meta), Colombia, durante la época de lluvias durante el segundo semestre de 2015. En la población de mapeo fueron detectados individuos con una segregación transgresiva tanto resistentes como susceptibles. A través de un análisis no paramétrico de intervalo simple, se detectaron dos QTL que explican el 10,9 y el 12,6 % de la varianza fenotípica de la resistencia en campo a CBB. Mediante análisis bioinformáticos se identificaron cuatro genes candidatos presentes en los intervalos de los QTL. Este trabajo representa un esfuerzo por dilucidar los mecanismos moleculares implicados en la resistencia de yuca a CBB.application/pdfspaUniversidad Nacional de Colombia - Sede Bogotá - Faculdad de Ciencias - Departamento de Biologíahttps://revistas.unal.edu.co/index.php/actabiol/article/view/57951Universidad Nacional de Colombia Revistas electrónicas UN Acta Biológica ColombianaActa Biológica ColombianaSoto Sedano, Carolina and Mora Moreno, Rubén Eduardo and Calle, Fernando and López Carrascal, Camilo Ernesto (2017) QTL identification for cassava bacterial blight resistance under natural infection conditions. Acta Biológica Colombiana, 22 (1). pp. 19-26. ISSN 1900-164957 Ciencias de la vida; Biología / Life sciences; biologyCassavamolecular markerQTLresistanceSNPsXanthomonas axonopodis pv. manihotis.marcador molecularQTLresistenciaSNPsXanthomonas axonopodis pv. manihotisyuca.QTL identification for cassava bacterial blight resistance under natural infection conditionsArtículo de revistainfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1http://purl.org/coar/version/c_970fb48d4fbd8a85Texthttp://purl.org/redcol/resource_type/ARTORIGINAL57951-313778-1-PB.pdfapplication/pdf401115https://repositorio.unal.edu.co/bitstream/unal/61159/1/57951-313778-1-PB.pdf6d5d82d4bb9e5048981616e1d948b272MD51THUMBNAIL57951-313778-1-PB.pdf.jpg57951-313778-1-PB.pdf.jpgGenerated Thumbnailimage/jpeg9135https://repositorio.unal.edu.co/bitstream/unal/61159/2/57951-313778-1-PB.pdf.jpg2f08eba33c6fe4dd17ffb8ee62def0e9MD52unal/61159oai:repositorio.unal.edu.co:unal/611592024-04-17 23:50:04.953Repositorio Institucional Universidad Nacional de Colombiarepositorio_nal@unal.edu.co |