Method to detect the default mode network in fMRI data corrupted with head motion

Abstract. The Default Mode Network (DMN) is a neuronal network widely used for grading the neu- rological state in patients with disorders of consciousness (DoC). It is detected in functional magnetic resonance imaging (fMRI) when the subject is in resting state conditions. However, provided that Do...

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Autores:
Baquero Duarte, Katherine Andrea
Tipo de recurso:
Fecha de publicación:
2013
Institución:
Universidad Nacional de Colombia
Repositorio:
Universidad Nacional de Colombia
Idioma:
spa
OAI Identifier:
oai:repositorio.unal.edu.co:unal/49705
Acceso en línea:
https://repositorio.unal.edu.co/handle/unal/49705
http://bdigital.unal.edu.co/43192/
Palabra clave:
61 Ciencias médicas; Medicina / Medicine and health
62 Ingeniería y operaciones afines / Engineering
65 Gerencia y servicios auxiliares / Management and public relations
Default Mode Network (DMN)
Functional Magnetic Resonance Imaging (fMRI)
Disorders of Consciousness (DoC)
Large head motion
Multiscale
Red Neuronal por Defecto (DMN)
Imágenes de Resonancia Magnética Funcional (fMRI)
Desordenes de Consciencia (DoC)
Movimientos de cabeza
Representación multiescala
Rights
openAccess
License
Atribución-NoComercial 4.0 Internacional
id UNACIONAL2_67d80e401d7b2aaa00670054e62f4b6e
oai_identifier_str oai:repositorio.unal.edu.co:unal/49705
network_acronym_str UNACIONAL2
network_name_str Universidad Nacional de Colombia
repository_id_str
dc.title.spa.fl_str_mv Method to detect the default mode network in fMRI data corrupted with head motion
title Method to detect the default mode network in fMRI data corrupted with head motion
spellingShingle Method to detect the default mode network in fMRI data corrupted with head motion
61 Ciencias médicas; Medicina / Medicine and health
62 Ingeniería y operaciones afines / Engineering
65 Gerencia y servicios auxiliares / Management and public relations
Default Mode Network (DMN)
Functional Magnetic Resonance Imaging (fMRI)
Disorders of Consciousness (DoC)
Large head motion
Multiscale
Red Neuronal por Defecto (DMN)
Imágenes de Resonancia Magnética Funcional (fMRI)
Desordenes de Consciencia (DoC)
Movimientos de cabeza
Representación multiescala
title_short Method to detect the default mode network in fMRI data corrupted with head motion
title_full Method to detect the default mode network in fMRI data corrupted with head motion
title_fullStr Method to detect the default mode network in fMRI data corrupted with head motion
title_full_unstemmed Method to detect the default mode network in fMRI data corrupted with head motion
title_sort Method to detect the default mode network in fMRI data corrupted with head motion
dc.creator.fl_str_mv Baquero Duarte, Katherine Andrea
dc.contributor.author.spa.fl_str_mv Baquero Duarte, Katherine Andrea
dc.contributor.spa.fl_str_mv Romero Castro, Eduardo
dc.subject.ddc.spa.fl_str_mv 61 Ciencias médicas; Medicina / Medicine and health
62 Ingeniería y operaciones afines / Engineering
65 Gerencia y servicios auxiliares / Management and public relations
topic 61 Ciencias médicas; Medicina / Medicine and health
62 Ingeniería y operaciones afines / Engineering
65 Gerencia y servicios auxiliares / Management and public relations
Default Mode Network (DMN)
Functional Magnetic Resonance Imaging (fMRI)
Disorders of Consciousness (DoC)
Large head motion
Multiscale
Red Neuronal por Defecto (DMN)
Imágenes de Resonancia Magnética Funcional (fMRI)
Desordenes de Consciencia (DoC)
Movimientos de cabeza
Representación multiescala
dc.subject.proposal.spa.fl_str_mv Default Mode Network (DMN)
Functional Magnetic Resonance Imaging (fMRI)
Disorders of Consciousness (DoC)
Large head motion
Multiscale
Red Neuronal por Defecto (DMN)
Imágenes de Resonancia Magnética Funcional (fMRI)
Desordenes de Consciencia (DoC)
Movimientos de cabeza
Representación multiescala
description Abstract. The Default Mode Network (DMN) is a neuronal network widely used for grading the neu- rological state in patients with disorders of consciousness (DoC). It is detected in functional magnetic resonance imaging (fMRI) when the subject is in resting state conditions. However, provided that DoC patients present a high degree of head motion, the fMRI imaging pro- cess will end up contaminated and the DMN will be completely lost or highly blurred. This work presents a novel multiscale method that improves DMN measurement in healthy control subjects and DoC patients whose data has been perturbed by head motion. The multiscale approach consists in �nding the relevant neuronal information at each scale so that the �nal DMN measurement is improved, considering a weighted compensation of the DMN at each scale. This method was compared with two baseline fMRI data processing methods: (1) a basic pipeline without special motion artifact reduction steps; and (2) a method that includes steps that aim to remove artifacts caused by motion.
publishDate 2013
dc.date.issued.spa.fl_str_mv 2013
dc.date.accessioned.spa.fl_str_mv 2019-06-29T09:11:54Z
dc.date.available.spa.fl_str_mv 2019-06-29T09:11:54Z
dc.type.spa.fl_str_mv Trabajo de grado - Maestría
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/masterThesis
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/acceptedVersion
dc.type.content.spa.fl_str_mv Text
dc.type.redcol.spa.fl_str_mv http://purl.org/redcol/resource_type/TM
status_str acceptedVersion
dc.identifier.uri.none.fl_str_mv https://repositorio.unal.edu.co/handle/unal/49705
dc.identifier.eprints.spa.fl_str_mv http://bdigital.unal.edu.co/43192/
url https://repositorio.unal.edu.co/handle/unal/49705
http://bdigital.unal.edu.co/43192/
dc.language.iso.spa.fl_str_mv spa
language spa
dc.relation.ispartof.spa.fl_str_mv Universidad Nacional de Colombia Sede Bogotá Facultad de Medicina Departamento de Imágenes Diagnósticas
Departamento de Imágenes Diagnósticas
dc.relation.references.spa.fl_str_mv Baquero Duarte, Katherine Andrea (2013) Method to detect the default mode network in fMRI data corrupted with head motion. Maestría thesis, Universidad Nacional de Colombia.
dc.rights.spa.fl_str_mv Derechos reservados - Universidad Nacional de Colombia
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.license.spa.fl_str_mv Atribución-NoComercial 4.0 Internacional
dc.rights.uri.spa.fl_str_mv http://creativecommons.org/licenses/by-nc/4.0/
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv Atribución-NoComercial 4.0 Internacional
Derechos reservados - Universidad Nacional de Colombia
http://creativecommons.org/licenses/by-nc/4.0/
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.mimetype.spa.fl_str_mv application/pdf
institution Universidad Nacional de Colombia
bitstream.url.fl_str_mv https://repositorio.unal.edu.co/bitstream/unal/49705/1/53124206.2013.pdf
https://repositorio.unal.edu.co/bitstream/unal/49705/2/53124206.2013.pdf.jpg
bitstream.checksum.fl_str_mv f54ddeed41ce0dc1e971bdee81e1e387
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repository.name.fl_str_mv Repositorio Institucional Universidad Nacional de Colombia
repository.mail.fl_str_mv repositorio_nal@unal.edu.co
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spelling Atribución-NoComercial 4.0 InternacionalDerechos reservados - Universidad Nacional de Colombiahttp://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Romero Castro, EduardoBaquero Duarte, Katherine Andrea79d255d7-ed5c-434a-9aa1-d312a9552aa03002019-06-29T09:11:54Z2019-06-29T09:11:54Z2013https://repositorio.unal.edu.co/handle/unal/49705http://bdigital.unal.edu.co/43192/Abstract. The Default Mode Network (DMN) is a neuronal network widely used for grading the neu- rological state in patients with disorders of consciousness (DoC). It is detected in functional magnetic resonance imaging (fMRI) when the subject is in resting state conditions. However, provided that DoC patients present a high degree of head motion, the fMRI imaging pro- cess will end up contaminated and the DMN will be completely lost or highly blurred. This work presents a novel multiscale method that improves DMN measurement in healthy control subjects and DoC patients whose data has been perturbed by head motion. The multiscale approach consists in �nding the relevant neuronal information at each scale so that the �nal DMN measurement is improved, considering a weighted compensation of the DMN at each scale. This method was compared with two baseline fMRI data processing methods: (1) a basic pipeline without special motion artifact reduction steps; and (2) a method that includes steps that aim to remove artifacts caused by motion.La Red Neuronal por Defecto (DMN, por sus siglas en inglés), es una red neuronal usada para determinar el nivel de consciencia en pacientes con desórdenes de consciencia (DoC, por sus siglas en inglés). Esta red neuronal se mide con imágenes de resonancia magnética funcional (fMRI) cuando los sujetos se encuentran en estado de reposo. Sin embargo, dado que este tipo de pacientes presentan un alto movimiento involuntario de cabeza, el procesamiento de imágenes de fMRI resultará contaminado y la medida de la DMN se podrá perturbar total o parcialmente. Este trabajo presenta un novedoso método multiescala que mejora la medida de la DMN en sujetos de control y en pacientes DoC de los cuales los datos fueron perturbados por movimientos de cabeza. El análisis multiescala consiste en detectar la información neuronal relevante en cada escala y la medida de la DMN resultante es mejorada teniendo en cuenta la compensación ponderada de la DMN en cada escala. Este método fue comparado con dos métodos de preprocesamiento de linea base: (1) un método básico de preproceamiento de fMRI sin reducción de artifactos de movimientos; y (2) un método que incluye etapas que remueven artefactos causados por movimiento.Maestríaapplication/pdfspaUniversidad Nacional de Colombia Sede Bogotá Facultad de Medicina Departamento de Imágenes DiagnósticasDepartamento de Imágenes DiagnósticasBaquero Duarte, Katherine Andrea (2013) Method to detect the default mode network in fMRI data corrupted with head motion. Maestría thesis, Universidad Nacional de Colombia.61 Ciencias médicas; Medicina / Medicine and health62 Ingeniería y operaciones afines / Engineering65 Gerencia y servicios auxiliares / Management and public relationsDefault Mode Network (DMN)Functional Magnetic Resonance Imaging (fMRI)Disorders of Consciousness (DoC)Large head motionMultiscaleRed Neuronal por Defecto (DMN)Imágenes de Resonancia Magnética Funcional (fMRI)Desordenes de Consciencia (DoC)Movimientos de cabezaRepresentación multiescalaMethod to detect the default mode network in fMRI data corrupted with head motionTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/acceptedVersionTexthttp://purl.org/redcol/resource_type/TMORIGINAL53124206.2013.pdfapplication/pdf5238378https://repositorio.unal.edu.co/bitstream/unal/49705/1/53124206.2013.pdff54ddeed41ce0dc1e971bdee81e1e387MD51THUMBNAIL53124206.2013.pdf.jpg53124206.2013.pdf.jpgGenerated Thumbnailimage/jpeg3874https://repositorio.unal.edu.co/bitstream/unal/49705/2/53124206.2013.pdf.jpgacde1f0ad3793525ea666fcaff523ee3MD52unal/49705oai:repositorio.unal.edu.co:unal/497052022-12-16 23:04:50.067Repositorio Institucional Universidad Nacional de Colombiarepositorio_nal@unal.edu.co