Caracterización de la diversidad microbiana asociada al tracto gastrointestinal del Panaque cochliodon (Cucha de ojos azules)

ilustraciones, fotografías, gráficos

Autores:: Cano Gil, Juan David

Tipo de recurso:

Fecha de publicación:: 2024

Institución:: Universidad Nacional de Colombia

Repositorio:: Universidad Nacional de Colombia

Idioma:: spa

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network_acronym_str	UNACIONAL2
network_name_str	Universidad Nacional de Colombia
repository_id_str
dc.title.spa.fl_str_mv	Caracterización de la diversidad microbiana asociada al tracto gastrointestinal del Panaque cochliodon (Cucha de ojos azules)
dc.title.translated.eng.fl_str_mv	Characterization of the microbial diversity associated with the gastrointestinal tract of the Panaque cochliodon (Blue-eyed Panaque)
title	Caracterización de la diversidad microbiana asociada al tracto gastrointestinal del Panaque cochliodon (Cucha de ojos azules)
spellingShingle	Caracterización de la diversidad microbiana asociada al tracto gastrointestinal del Panaque cochliodon (Cucha de ojos azules) 590 - Animales 570 - Biología 570 - Biología::573 - Sistemas fisiológicos específicos en animales, histología regional y fisiología en los animales Especies endémicas - Colombia Especies vulnerables - Colombia Peces de agua dulce - Colombia Panaque cochliodon Nutrición animal Flora microbiana Microbiomas Peces de agua dulce - Digestión Panaque cochliodon cucha de ojos azules microbiota intestinal Metagenómica gen ADN 16S blue-eyed pleco metagenomics bacterial 16S rRNA intestinal microbiota
title_short	Caracterización de la diversidad microbiana asociada al tracto gastrointestinal del Panaque cochliodon (Cucha de ojos azules)
title_full	Caracterización de la diversidad microbiana asociada al tracto gastrointestinal del Panaque cochliodon (Cucha de ojos azules)
title_fullStr	Caracterización de la diversidad microbiana asociada al tracto gastrointestinal del Panaque cochliodon (Cucha de ojos azules)
title_full_unstemmed	Caracterización de la diversidad microbiana asociada al tracto gastrointestinal del Panaque cochliodon (Cucha de ojos azules)
title_sort	Caracterización de la diversidad microbiana asociada al tracto gastrointestinal del Panaque cochliodon (Cucha de ojos azules)
dc.creator.fl_str_mv	Cano Gil, Juan David
dc.contributor.advisor.none.fl_str_mv	David Ruales, Carlos Arturo Pardo Carrasco, Sandra Clemencia Gutiérrez Ramírez, Luz Adriana
dc.contributor.author.none.fl_str_mv	Cano Gil, Juan David
dc.contributor.researchgroup.spa.fl_str_mv	Producción, Desarrollo y Transformación Agropecuaria (GIPDTA).
dc.contributor.orcid.spa.fl_str_mv	Cano Gil, Juan David (0000000245747509)
dc.contributor.cvlac.spa.fl_str_mv	Cano Gil, Juan David (0001821334)
dc.subject.ddc.spa.fl_str_mv	590 - Animales 570 - Biología 570 - Biología::573 - Sistemas fisiológicos específicos en animales, histología regional y fisiología en los animales
topic	590 - Animales 570 - Biología 570 - Biología::573 - Sistemas fisiológicos específicos en animales, histología regional y fisiología en los animales Especies endémicas - Colombia Especies vulnerables - Colombia Peces de agua dulce - Colombia Panaque cochliodon Nutrición animal Flora microbiana Microbiomas Peces de agua dulce - Digestión Panaque cochliodon cucha de ojos azules microbiota intestinal Metagenómica gen ADN 16S blue-eyed pleco metagenomics bacterial 16S rRNA intestinal microbiota
dc.subject.agrovoc.none.fl_str_mv	Especies endémicas - Colombia Especies vulnerables - Colombia Peces de agua dulce - Colombia Panaque cochliodon Nutrición animal Flora microbiana Microbiomas
dc.subject.lemb.none.fl_str_mv	Peces de agua dulce - Digestión
dc.subject.proposal.spa.fl_str_mv	Panaque cochliodon cucha de ojos azules microbiota intestinal Metagenómica gen ADN 16S
dc.subject.proposal.eng.fl_str_mv	blue-eyed pleco metagenomics bacterial 16S rRNA intestinal microbiota
description	ilustraciones, fotografías, gráficos
publishDate	2024
dc.date.accessioned.none.fl_str_mv	2024-04-16T14:30:17Z
dc.date.available.none.fl_str_mv	2024-04-16T14:30:17Z
dc.date.issued.none.fl_str_mv	2024-04-10
dc.type.spa.fl_str_mv	Trabajo de grado - Maestría
dc.type.driver.spa.fl_str_mv	info:eu-repo/semantics/masterThesis
dc.type.version.spa.fl_str_mv	info:eu-repo/semantics/acceptedVersion
dc.type.content.spa.fl_str_mv	DataPaper Image Text
dc.type.redcol.spa.fl_str_mv	http://purl.org/redcol/resource_type/TM
status_str	acceptedVersion
dc.identifier.uri.none.fl_str_mv	https://repositorio.unal.edu.co/handle/unal/85923
dc.identifier.instname.spa.fl_str_mv	Universidad Nacional de Colombia
dc.identifier.reponame.spa.fl_str_mv	Repositorio Institucional Universidad Nacional de Colombia
dc.identifier.repourl.spa.fl_str_mv	https://repositorio.unal.edu.co/
url	https://repositorio.unal.edu.co/handle/unal/85923 https://repositorio.unal.edu.co/
identifier_str_mv	Universidad Nacional de Colombia Repositorio Institucional Universidad Nacional de Colombia
dc.language.iso.spa.fl_str_mv	spa
language	spa
dc.relation.indexed.spa.fl_str_mv	LaReferencia
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dc.coverage.country.none.fl_str_mv	Colombia
dc.publisher.spa.fl_str_mv	Universidad Nacional de Colombia
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dc.publisher.faculty.spa.fl_str_mv	Facultad de Ciencias Agrarias
dc.publisher.place.spa.fl_str_mv	Medellín, Colombia
dc.publisher.branch.spa.fl_str_mv	Universidad Nacional de Colombia - Sede Medellín
institution	Universidad Nacional de Colombia
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spelling	Atribución-NoComercial-CompartirIgual 4.0 Internacionalhttp://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2David Ruales, Carlos Arturoe347852e472d254460d2574b239150cdPardo Carrasco, Sandra Clemenciafe39f49924d8437bd04909027b444124Gutiérrez Ramírez, Luz Adrianadee9a8fef1932bf08a4dc3208e6d3d53Cano Gil, Juan David46087fbc014af1cdcd2700e8779f37eeProducción, Desarrollo y Transformación Agropecuaria (GIPDTA).Cano Gil, Juan David (0000000245747509)Cano Gil, Juan David (0001821334)2024-04-16T14:30:17Z2024-04-16T14:30:17Z2024-04-10https://repositorio.unal.edu.co/handle/unal/85923Universidad Nacional de ColombiaRepositorio Institucional Universidad Nacional de Colombiahttps://repositorio.unal.edu.co/ilustraciones, fotografías, gráficosPanaque cochliodon, conocido en Colombia como cucha de ojos azules, es una especie endémica de las cuencas del Cauca y el Magdalena, y está clasificada como vulnerable (A2d) en el Libro Rojo de los Peces de Agua Dulce de Colombia. Este es el primer reporte para Colombia sobre esta especie en medio natural razón por la cual se escogió para este trabajo, además por tener hábitos xilívoros, es decir, que consume madera como principal fuente de alimento para su nutrición, siendo una especie de gran valor biológico para el ecosistema. Se tiene cierto conocimiento sobre su comportamiento básico, adaptación al cautiverio y otras características relacionadas con su alimentación y reproducción, sin embargo, se desconoce por completo su fisiología digestiva y las posibles relaciones simbióticas de los componentes de su microbiota intestinal. En este estudio se realizó la primera caracterización de la microbiota asociada al tracto gastrointestinal de Panaque cochliodon. Para ello, se capturaron y utilizaron tres ejemplares adultos provenientes del río Magdalena, los cuales fueron transportados y sacrificados siguiendo las normas de bienestar animal. Se realizó la disección del tracto intestinal, obteniendo muestras para el aislamiento microbiológico e identificación molecular de los microorganismos cultivables, con el objetivo de obtener información filogenética. Mediante análisis bioinformáticos, se identificaron varios géneros de interés para la producción agropecuaria y de alimentos, como: Bacillus paramycoides, Bacillus velezensis, Bacillus thuringiensis y Lactococcus cremoris. Posteriormente, se realizó un análisis metagenómico utilizando la extracción de ADN de tres secciones intestinales: anterior, media y posterior. El ADN se amplificó mediante PCR y, finalmente, se secuenció utilizando el gen ADNr 16S bacteriano. Como resultado, se identificaron todas las comunidades bacterianas que forman parte de la microbiota intestinal, con una presencia predominante de Proteobacteria, Actinobacteriota, Firmicutes, Bdellovibrionota, Planctomycetes, Verrucomicrobiota, Spirochaetota y Cyanobacteria. El análisis metagenómico reveló diferencias funcionales entre las comunidades y la abundancia relativa de la microbiota intestinal. (Tomado de la fuente)Panaque cochliodon, known in Colombia as blue-eyed pleco,' is an endemic species in the Cauca and Magdalena river basins, classified as vulnerable (A2d) in the Red Book of Freshwater Fish of Colombia. This is the first report for Colombia on this species in its natural habitat, which is why it was chosen for this study. Additionally, due to its xylophagous habits—meaning it primarily consumes wood as a source of nutrition—it holds significant biological value for the ecosystem. While there is some knowledge about its basic behavior, adaptation to captivity, and other characteristics related to its feeding and reproduction, its digestive physiology and potential symbiotic relationships within its intestinal microbiota remain completely unknown. This study conducted the first characterization of the microbiota associated with the gastrointestinal tract of Panaque cochliodon. Three adult specimens from the Magdalena River were captured, transported, and sacrificed following animal welfare standards. Intestinal dissection was performed, obtaining samples for microbiological isolation and molecular identification of cultivable microorganisms to gather phylogenetic information. Through bioinformatic analysis, several genera of interest for agricultural and food production were identified, including Bacillus paramycoides, Bacillus velezensis, Bacillus thuringiensis, and Lactococcus cremoris. Subsequently, a metagenomic analysis was conducted using DNA extraction from three intestinal sections: anterior, middle, and posterior. DNA was amplified via PCR and sequenced using the bacterial 16S rRNA gene. As a result, all bacterial communities forming part of the intestinal microbiota were identified, with a predominant presence of Proteobacteria, Actinobacteriota, Firmicutes, Bdellovibrionota, Planctomycetes, Verrucomicrobiota, Spirochaetota, and Cyanobacteria. The metagenomic analysis revealed functional differences between communities and the relative abundance of the intestinal microbiotaMaestríaMagister en Ciencias AgrariasSe capturaron y utilizaron tres ejemplares adultos provenientes del río Magdalena, los cuales fueron transportados y sacrificados siguiendo las normas de bienestar animal. Se realizó la disección del tracto intestinal, obteniendo muestras para el aislamiento microbiológico e identificación molecular de los microorganismos cultivables, con el objetivo de obtener información filogenética. Mediante análisis bioinformáticos, se identificaron varios géneros de interés para la producción agropecuaria y de alimentos, como: Bacillus paramycoides, Bacillus velezensis, Bacillus thuringiensis y Lactococcus cremoris. Posteriormente, se realizó un análisis metagenómico utilizando la extracción de ADN de tres secciones intestinales: anterior, media y posterior. El ADN se amplificó mediante PCR y, finalmente, se secuenció utilizando el gen ADNr 16S bacteriano. Como resultado, se identificaron todas las comunidades bacterianas que forman parte de la microbiota intestinal, con una presencia predominante de Proteobacteria, Actinobacteriota, Firmicutes, Bdellovibrionota, Planctomycetes, Verrucomicrobiota, Spirochaetota y Cyanobacteria. El análisis metagenómico reveló diferencias funcionales entre las comunidades y la abundancia relativa de la microbiota intestinal.Biotecnología y producción agropecuariaProducción Agraria Sostenible.Sede Medellín97 páginasapplication/pdfspaUniversidad Nacional de ColombiaMedellín - Ciencias Agrarias - Maestría en Ciencias AgrariasFacultad de Ciencias AgrariasMedellín, ColombiaUniversidad Nacional de Colombia - Sede Medellín590 - Animales570 - Biología570 - Biología::573 - Sistemas fisiológicos específicos en animales, histología regional y fisiología en los animalesEspecies endémicas - ColombiaEspecies vulnerables - ColombiaPeces de agua dulce - ColombiaPanaque cochliodonNutrición animalFlora microbianaMicrobiomasPeces de agua dulce - DigestiónPanaque cochliodoncucha de ojos azulesmicrobiota intestinalMetagenómicagen ADN 16Sblue-eyed plecometagenomicsbacterial 16S rRNAintestinal microbiotaCaracterización de la diversidad microbiana asociada al tracto gastrointestinal del Panaque cochliodon (Cucha de ojos azules)Characterization of the microbial diversity associated with the gastrointestinal tract of the Panaque cochliodon (Blue-eyed Panaque)Trabajo de grado - Maestríainfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/acceptedVersionDataPaperImageTexthttp://purl.org/redcol/resource_type/TMColombiaLaReferenciaAbdul Rahman, N., Parks, D., Willner, DL Engelbrektson, A., Goffredi, S., Warnecke, F., & Hugenholtz. 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Antonie van Leeuwenhoek, 110(4), 501–513. https://doi.org/10.1007/s10482-016-0819-xIdentificación molecular del microbioma en el tracto gastrointestinal de la especie Panaque cochliodon (cucha de ojos azules)Corporación Universitaria LasallistaEstudiantesInvestigadoresMaestrosLICENSElicense.txtlicense.txttext/plain; charset=utf-85879https://repositorio.unal.edu.co/bitstream/unal/85923/1/license.txteb34b1cf90b7e1103fc9dfd26be24b4aMD51ORIGINAL1028004844.2024.pdf1028004844.2024.pdfTesis de Maestría en Ciencias Agrariasapplication/pdf3538696https://repositorio.unal.edu.co/bitstream/unal/85923/2/1028004844.2024.pdf4a68d3243e713b16b13a84111e417adcMD52THUMBNAIL1028004844.2024.pdf.jpg1028004844.2024.pdf.jpgGenerated Thumbnailimage/jpeg5129https://repositorio.unal.edu.co/bitstream/unal/85923/3/1028004844.2024.pdf.jpg3216e31604b6265cb4a6d7aa0b468e70MD53unal/85923oai:repositorio.unal.edu.co:unal/859232024-08-23 23:12:14.324Repositorio Institucional Universidad Nacional de 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

Caracterización de la diversidad microbiana asociada al tracto gastrointestinal del Panaque cochliodon (Cucha de ojos azules)

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