Estudio de la diversidad molecular de Fusarium oxysporum f. sp. cubense presente en Colombia
ilustraciones, diagramas, mapas, tablas
- Autores:
-
Vásquez Barajas, Dayana Andrea
- Tipo de recurso:
- Fecha de publicación:
- 2021
- Institución:
- Universidad Nacional de Colombia
- Repositorio:
- Universidad Nacional de Colombia
- Idioma:
- spa
- OAI Identifier:
- oai:repositorio.unal.edu.co:unal/82353
- Palabra clave:
- 630 - Agricultura y tecnologías relacionadas::632 - Lesiones, enfermedades, plagas vegetales
660 - Ingeniería química
Banano - Enfermedades y plagas
Biotecnología agrícola
Banana - disease and pests
Musáceas
Fitopatógeno
Marchitez por Fusarium
ITS
EF 1α
RPB2
Fusarium oxysporum f. sp. cubense
Musaceae
Phytopathogen
Fusarium wilt
- Rights
- openAccess
- License
- Atribución-NoComercial-SinDerivadas 4.0 Internacional
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| dc.title.spa.fl_str_mv |
Estudio de la diversidad molecular de Fusarium oxysporum f. sp. cubense presente en Colombia |
| dc.title.translated.eng.fl_str_mv |
Study molecular diversity of Fusarium oxysporum f. sp. cubense present in Colombia |
| title |
Estudio de la diversidad molecular de Fusarium oxysporum f. sp. cubense presente en Colombia |
| spellingShingle |
Estudio de la diversidad molecular de Fusarium oxysporum f. sp. cubense presente en Colombia 630 - Agricultura y tecnologías relacionadas::632 - Lesiones, enfermedades, plagas vegetales 660 - Ingeniería química Banano - Enfermedades y plagas Biotecnología agrícola Banana - disease and pests Musáceas Fitopatógeno Marchitez por Fusarium ITS EF 1α RPB2 Fusarium oxysporum f. sp. cubense Musaceae Phytopathogen Fusarium wilt |
| title_short |
Estudio de la diversidad molecular de Fusarium oxysporum f. sp. cubense presente en Colombia |
| title_full |
Estudio de la diversidad molecular de Fusarium oxysporum f. sp. cubense presente en Colombia |
| title_fullStr |
Estudio de la diversidad molecular de Fusarium oxysporum f. sp. cubense presente en Colombia |
| title_full_unstemmed |
Estudio de la diversidad molecular de Fusarium oxysporum f. sp. cubense presente en Colombia |
| title_sort |
Estudio de la diversidad molecular de Fusarium oxysporum f. sp. cubense presente en Colombia |
| dc.creator.fl_str_mv |
Vásquez Barajas, Dayana Andrea |
| dc.contributor.advisor.none.fl_str_mv |
Arango Isaza, Rafael Eduardo Saldamando Benjumea, Clara Inés |
| dc.contributor.author.none.fl_str_mv |
Vásquez Barajas, Dayana Andrea |
| dc.contributor.researchgroup.spa.fl_str_mv |
Biotecnología Vegetal Unalmed Cib |
| dc.subject.ddc.spa.fl_str_mv |
630 - Agricultura y tecnologías relacionadas::632 - Lesiones, enfermedades, plagas vegetales 660 - Ingeniería química |
| topic |
630 - Agricultura y tecnologías relacionadas::632 - Lesiones, enfermedades, plagas vegetales 660 - Ingeniería química Banano - Enfermedades y plagas Biotecnología agrícola Banana - disease and pests Musáceas Fitopatógeno Marchitez por Fusarium ITS EF 1α RPB2 Fusarium oxysporum f. sp. cubense Musaceae Phytopathogen Fusarium wilt |
| dc.subject.lemb.spa.fl_str_mv |
Banano - Enfermedades y plagas Biotecnología agrícola |
| dc.subject.lemb.eng.fl_str_mv |
Banana - disease and pests |
| dc.subject.proposal.spa.fl_str_mv |
Musáceas Fitopatógeno Marchitez por Fusarium ITS EF 1α RPB2 |
| dc.subject.proposal.eng.fl_str_mv |
Fusarium oxysporum f. sp. cubense Musaceae Phytopathogen Fusarium wilt |
| description |
ilustraciones, diagramas, mapas, tablas |
| publishDate |
2021 |
| dc.date.issued.none.fl_str_mv |
2021-04 |
| dc.date.accessioned.none.fl_str_mv |
2022-10-05T13:38:27Z |
| dc.date.available.none.fl_str_mv |
2022-10-05T13:38:27Z |
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Trabajo de grado - Maestría |
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info:eu-repo/semantics/masterThesis |
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info:eu-repo/semantics/acceptedVersion |
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http://purl.org/redcol/resource_type/TM |
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https://repositorio.unal.edu.co/handle/unal/82353 |
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Universidad Nacional de Colombia |
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Repositorio Institucional Universidad Nacional de Colombia |
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https://repositorio.unal.edu.co/ |
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https://repositorio.unal.edu.co/handle/unal/82353 https://repositorio.unal.edu.co/ |
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Universidad Nacional de Colombia Repositorio Institucional Universidad Nacional de Colombia |
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spa |
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Genetic diversity of Fusarium oxysporum f. sp. cubense causing Panama wilt of banana in the Philippines. Pathogens, 9(1). https://doi.org/10.3390/pathogens9010032 Batlle Viera y Luis Pérez Vicente, A. (2009). Variabilidad genética de las poblaciones de Fusarium oxysporum f. sp. cubense en bananos y plátanos de cuba. Fitosanidad, 13(3), 169-186. http://scielo.sld.cu/pdf/fit/v13n3/fit04309.pdf Bentley, S., Pegg, K. G., Moore, N. Y., Davis, R. D., & Buddenhagen, I. W. (1998). Genetic variation among vegetative compatibility groups of Fusarium oxysporum f. sp. cubense analyzed by DNA fingerprinting. Phytopathology. https://doi.org/10.1094/PHYTO.1998.88.12.1283 Cañas-Gutierrez, G. P., Patino, L. F., Rodriguez–Arango, E., & Arango, R. (2006). Molecular Characterization of Benomyl-resistant Isolates of Mycosphaerella fijiensis, Collected in Colombia. Journal of Phytopathology, 154(7–8), 403–409. https://doi.org/10.1111/j.1439-0434.2006.01113.x Costa, S. N., Braganc, C. A. D., Ribeiro, L. R., Amorim, E. P., & Oliveira, S. A. S. (2015). Genetic structure of Fusarium oxysporum f . sp . cubense in different regions from Brazil. 137–146. https://doi.org/10.1111/ppa.12242 Cunha, C. M. S., Hinz, R. H., Pereira, A., Tcacenco, F. A., & Stadnik, M. J. (2015). Aggressiveness and genetic diversity of Fusarium oxysporum f. sp. cubense from Santa Catarina, southern Brazil. Tropical Plant Pathology, 40(5), 326–334. https://doi.org/10.1007/s40858-015-0046-4 Czislowski, E., Fraser-Smith, S., Zander, M., O’Neill, W. T., Meldrum, R. A., Tran-Nguyen, L. T. T., Batley, J., & Aitken, E. A. B. (2018). Investigation of the diversity of effector genes in the banana pathogen, Fusarium oxysporum f. sp. cubense, reveals evidence of horizontal gene transfer. Molecular Plant Pathology, 19(5), 1155–1171. https://doi.org/10.1111/mpp.12594 Darriba, D., Taboada, G., Doallo, R., Naturaleza, D. P.-M. de la, & 2012, U. (2012). jModelTest 2: más modelos, nuevas heurísticas y computación paralela. Nature.Com. https://www.nature.com/articles/nmeth.2109?page=27 David Maldonado-Bonilla, L., Alicia Calderón-Oropeza, M., Luis Villarruel-Ordaz, J., & Claudia Sánchez-Espinosa, A. (2019). Identification of Novel Potential Causal Agents of Fusarium Wilt of Musa sp. AAB in Southern Mexico. Journal of Plant Pathology & Microbiology Research Article 1 J Plant Pathol Microbiol, 10, 479. https://doi.org/10.24105/2157-7471.10.479 Dias, J. S. A., Abreu, M. S., & Resende, M. L. V. (2014). Caracterização de Isolados de Fusarium oxysporum f. sp. cubense (Foc) Quanto à Compatibilidade Vegetativa e à Patogenicidade em Cultivares de Bananeira Diferenciadoras de Raças no Brasil. Biota Amazônia. https://doi.org/10.18561/2179-5746/biotaamazonia.v4n4p60-65 Dita, M. A., Waalwijk, C., Buddenhagen, I. W., Souza, J. T., & Kema, G. H. J. (2010). A molecular diagnostic for tropical race 4 of the banana fusarium wilt pathogen. Plant Pathology, 59(2), 348–357. https://doi.org/10.1111/j.1365-3059.2009.02221.x Dita, M., Echegoyén Ramos, P. E., & Pérez Vicente, L. F. (2013). Plan de contingencia ante un brote de la raza 4 tropical de Fusarium oxysporum f. sp. cubense En un país de la región del OIRSA. https://www.musalit.org/seeMore.php?id=14819 Dita, M., Echegoyén Ramos, P. E., & Pérez Vicente, L. F. (2017). Organismo internacional regional de sanidad agropecuaria oirsa plan de contingencia ante un brote de la Raza 4 Tropical de Fusarium. Dita, Miguel A, & Martinez De La Parte, E. (2014). Technical Manual Prevention and diagnostic of Fusarium Wilt (Panama Disease) of banana caused by Fusarium oxysporum f. sp. cubense Tropical Race 4(TR4). 4(May), 1–74. https://www.researchgate.net/publication/273632807 Dita, Miguel, Meijer, H., Li, C., Liu, S., Wu, B., Lv, S., Shen, Z., Li, R., Yi, G., & Guo, X. (2019). Genetic Diversity in FUB Genes of Fusarium oxysporum f. sp. cubense Suggests Horizontal Gene Transfer. Front. Plant Sci, 10, 1069. https://doi.org/10.3389/fpls.2019.01069 Edel-Hermann, V., & Lecomte, C. (n.d.). Current Status of Fusarium oxysporum Formae Speciales and Races. https://doi.org/10.1094/PHYTO-08-18-0320-RVW Eltschinger, S., Greganova, E., Heller, M., Bütikofer, P., & Altmann, M. (2012). Eukaryotic translation elongation factor 1A (eEF1A) domain I from S. cerevisiae is required but not sufficient for inter-species complementation. PloS one, 7(7), e42338. https://doi.org/10.1371/journal.pone.0042338 Emira Garces De Granada, Martha Cecilia Orozco De Amezquita, Gloria Rocio Bautista Mendoza, H. A. V. Z. (2001). Fusarium oxysporum el hongo que nos falta conocer. Acta Biológica Colombiana. https://revistas.unal.edu.co/index.php/actabiol/article/view/63462 Fourie, G., Steenkamp, E. T., Ploetz, R. C., Gordon, T. R., & Viljoen, A. (2011). Current status of the taxonomic position of Fusarium oxysporum formae specialis cubense within the Fusarium oxysporum complex. Infection, Genetics and Evolution, 11(3), 533–542. https://doi.org/10.1016/j.meegid.2011.01.012 Fourie, Gerda, Steenkamp, E. T., Gordon, T. R., & Viljoen, A. (2009). Evolutionary relationships among the Fusarium oxysporum f. sp. cubense vegetative compatibility groups. Applied and Environmental Microbiology. https://doi.org/10.1128/AEM.00370-09 Geiser, D. M., Aoki, T., Bacon, C. W., Baker, S. E., Bhattacharyya, M. K., Brandt, M. E., Brown, D. W., Burgess, L. W., Chulze, S., Coleman, J. J., Correll, J. C., Covert, S. F., Crous, P. W., Cuomo, C. A., De Hoog, G. S., Di Pietro, A., Elmer, W. H., Epstein, L., Frandsen, R. J. N., … Zhang, N. (2013). One fungus, one name: Defining the genus Fusarium in a scientifically robust way that preserves longstanding use. Phytopathology. https://doi.org/10.1094/PHYTO-07-12-0150-LE Gordon, T. R., & Martyn, R. D. (1997). THE EVOLUTIONARY BIOLOGY OF FUSARIUM OXYSPORUM . Annual Review of Phytopathology, 35(1), 111–128. https://doi.org/10.1146/annurev.phyto.35.1.111 Groenewald, S., Van Den Berg, N., Marasas, W. F. O., & Viljoen, A. (2006). Biological, physiological and pathogenic variation in a genetically homogenous population of Fusarium oxysporum f.sp. cubense. Australasian Plant Pathology, 35(4), 401–409. https://doi.org/10.1071/AP06041 Hennessy, C., Walduck, G., Daly, A., & Padovan, A. (2005). Weed hosts of Fusarium oxysporum f. sp. cubense tropical race 4 in northern Australia. Australasian Plant Pathology, 34(1), 115–117. https://doi.org/10.1071/AP04091 Islam, S. (2015). Establishment and Characterization of An Unique Fusarium oxysporum f . sp . cubense Collection From Affected Musa Cultivars in Peru Establishment and Characterization of An Unique Fusarium oxysporum f . sp . cubense Collection From Affected Musa Cultivars. July, 30. https://doi.org/10.13140/RG.2.1.4031.6003 Karangwa, P., Board, D., Kigali, R. ;, Mostert, D., Ndayihanzamaso, P., & Viljoen, A. (2018). Genetic Diversity of Fusarium oxysporum f. sp. cubense in East and Central Africa Rwanda Agriculture and Animal Resources. https://doi.org/10.1094/PDIS-02-17-0282-RE Koenig, R. L., Ploetz, R. C., & Kistler, H. C. (1997). Fusarium oxysporum f. sp. cubense consists of a small number of divergent and globally distributed clonal lineages. Phytopathology, 87(9), 915–923. https://doi.org/10.1094/PHYTO.1997.87.9.915 Kistler HC (1997). Genetic diversity in the plant-pathogenic fungus Fusarium oxysporum. Phytopathology 87(4): 474–479 Leslie, J. F., & Summerell, B. A. (2006). The Fusarium Laboratory Manual. In J. F. Leslie & B. A. Summerell (Eds.), The Fusarium Laboratory Manual. Blackwell Publishing. https://doi.org/10.1002/9780470278376 Liu, S., Wu, B., Lv, S., Shen, Z., Li, R., Yi, G., Li, C., & Guo, X. (2019). Genetic Diversity in FUB Genes of Fusarium oxysporum f. sp. cubense Suggests Horizontal Gene Transfer. Frontiers in Plant Science, 10, 1069. https://doi.org/10.3389/fpls.2019.01069 Llorens, A., Hinojo, M. J., Mateo, R., González-Jaén, M. T., Valle-Algarra, F. M., Logrieco, A., & Jiménez, M. (2006). Characterization of Fusarium spp. isolates by PCR-RFLP analysis of the intergenic spacer region of the rRNA gene (rDNA). International Journal of Food Microbiology, 106(3), 297–306. https://doi.org/10.1016/j.ijfoodmicro.2005.09.005 Lombard L, Sandoval-Denis M, Lamprecht SC, Crous PW. Epitypification of Fusarium oxysporum - clearing the taxonomic chaos. Persoonia. (2019);43:1-47. doi: 10.3767/persoonia.2019.43.01. Epub 2018 Dec 18. PMID: 32214496; PMCID: PMC7085860 Ma, L.-J., Geiser, D. M., Proctor, R. H., Rooney, A. P., O’Donnell, K., Trail, F., Gardiner, D. M., Manners, J. M., & Kazan, K. (2013). Fusarium Pathogenomics . Annual Review of Microbiology. https://doi.org/10.1146/annurev-micro-092412-155650 Magdama, F., Monserrate-Maggi, L., Serrano, L., Onofre, J. G., & Del Mar Jiménez-Gasco, M. (2020). Genetic Diversity of Fusarium oxysporum f. sp. cubense, the Fusarium Wilt Pathogen of Banana, in Ecuador. https://doi.org/10.3390/plants9091133 Magdama, F., Monserrate-Maggi, L., Serrano, L., Sosa, D., Geiser, D. M., & Jiménez-Gasco, M. del M. (2019). Comparative analysis uncovers the limitations of current molecular detection methods for Fusarium oxysporum f. sp. cubense Race 4 strains. PLoS ONE, 14(9). https://doi.org/10.1371/journal.pone.0222727 Maryani, N., Lombard, L., Poerba, Y. S., Subandiyah, S., Crous, P. W., & Kema, G. H. J. (2019). Phylogeny and genetic diversity of the banana Fusarium wilt pathogen Fusarium oxysporum f. sp. cubense in the Indonesian centre of origin. Studies in Mycology, 92, 155–194. https://doi.org/10.1016/j.simyco.2018.06.003 Maryani, N., Sandoval-Denis, M., Lombard, L., Crous, P. W., & Kema, G. H. J. (2019). New endemic Fusarium species hitch-hiking with pathogenic Fusarium strains causing Panama disease in small-holder banana plots in Indonesia. Persoonia: Molecular Phylogeny and Evolution of Fungi, 43, 48–69. https://doi.org/10.3767/persoonia.2019.43.02 Mateyak MK, Kinzy TG. eEF1A: thinking outside the ribosome. J Biol Chem. 2010 Jul 9;285(28):21209-13. doi: 10.1074/jbc.R110.113795. Epub 2010 May 5. PMID: 20444696; PMCID: PMC2898402 Maymon, M., Sela, N., Shpatz, U., Galpaz, N., & Freeman, S. (2020). The origin and current situation of Fusarium oxysporum f. sp. cubense tropical race 4 in Israel and the Middle East. Scientific Reports, 10(1). https://doi.org/10.1038/s41598-020-58378-9 Mostert, D., Molina, A. B., Daniells, J., Fourie, G., Hermanto, C., Chao, C.-P., Fabregar, E., Sinohin, V. G., Masdek, N., Thangavelu, R., Li, C., Yi, G., Mostert, L., & Viljoen, A. (2017). The distribution and host range of the banana Fusarium wilt fungus, Fusarium oxysporum f. sp. cubense, in Asia. https://doi.org/10.1371/journal.pone.0181630 Muhammad, A., Hussain, I., Khanzada, K. A., Kumar, L., Ali, M., Yasmin, T., & Hyder, M. Z. (2017). Molecular characterization of Fusarium oxysporum f. sp. cubense (FOC) tropical race 4 causing panama disease in Cavendish Banana in Pakistan. Pakistan Journal of Agricultural Sciences, 54(1), 1–8. https://doi.org/10.21162/PAKJAS/17.4674 Nasir, N., Pittaway, P. A., Pegg, K. G., & Lisle, A. T. (1999). A pilot study investigating the complexity of Fusarium wilt of bananas in West Sumatra, Indonesia. Australian Journal of Agricultural Research, 50(7), 1279–1283. Nelson, P. E. (1981). Life Cycle and Epidemiology of Fusarium oxysporum. In Fungal Wilt Diseases of Plants (pp. 51–80). Elsevier. https://doi.org/10.1016/b978-0-12-464450-2.50008-5 Nelson, P. E., Toussoun, T. A., & Marasas, W. F. O. (1983). Fusarium Species: An Illustrated Manual for Identification. In Pennsylvania State University Press: University Park, PA. O’Donnell, K., Gueidan, C., Sink, S., Johnston, P. R., Crous, P. W., Glenn, A., Riley, R., Zitomer, N. C., Colyer, P., Waalwijk, C., Lee, T. van der, Moretti, A., Kang, S., Kim, H. S., Geiser, D. M., Juba, J. H., Baayen, R. P., Cromey, M. G., Bithell, S., … Sarver, B. A. J. (2009). A two-locus DNA sequence database for typing plant and human pathogens within the Fusarium oxysporum species complex. Fungal Genetics and Biology, 46(12), 936–948. https://doi.org/10.1016/j.fgb.2009.08.006 O’Donnell, K., Kistlerr, H. C., Cigelnik, E., & Ploetz, R. C. (1998). Multiple evolutionary origins of the fungus causing panama disease of banana: Concordant evidence from nuclear and mitochondrial gene genealogies. Proceedings of the National Academy of Sciences of the United States of America, 95(5), 2044–2049. https://doi.org/10.1073/pnas.95.5.2044 O’Donnell, K., Sutton, D. A., Rinaldi, M. G., Magnon, K. C., Cox, P. A., Revankar, S. G., Sanche, S., Geiser, D. M., Juba, J. H., Van Burik, J. A. H., Padhye, A., Anaissie, E. J., Francesconi, A., Walsh, T. J., & Robinson, J. S. (2004). Genetic diversity of human pathogenic members of the Fusarium oxysporum complex inferred from multilocus DNA sequence data and amplified fragment length polymorphism analyses: Evidence for the recent dispersion of a geographically widespread clonal lineage and nosocomial origin. Journal of Clinical Microbiology, 42(11), 5109–5120. https://doi.org/10.1128/JCM.42.11.5109-5120.2004 O’Donnell, K., Sutton, D. A., Rinaldi, M. G., Sarver, B. A. J., Balajee, S. A., Schroers, H. J., Summerbell, R. C., Robert, V. A. R. G., Crous, P. W., Zhang, N., Aoki, T., Jung, K., Park, J., Lee, Y. H., Kang, S., Park, B., & Geiser, D. M. (2010). Internet-accessible DNA sequence database for identifying fusaria from human and animal infections. Journal of Clinical Microbiology, 48(10), 3708–3718. https://doi.org/10.1128/JCM.00989-10 O’Donnell, K., Ward, T. J., Robert, V. A., Crous, P. W., Geiser, D. M., & Kang, S. (2015). DNA sequence-based identification of Fusarium: current status and future directions. Phytoparasitica, 43(5), 583-595. Ordonez, N., Seidl, M. F., Waalwijk, C., Drenth, A., Kilian, A., Thomma, B. P., ... & Kema, G. H. (2015). Worse comes to worst: bananas and Panama disease—when plant and pathogen clones meet. PLoS pathogens, 11(11), e1005197. Pérez-Vicente, L. (2015). Fusarium Wilt (Panama Disease) of Bananas: an Updating Review of the Current Knowledge on the Disease and Its Causal Agent. January 2004. Ploetz, R. C. (1988). Vegetative Compatibility Among Races of Fusarium oxysporum f. sp. cubense. Plant Disease. https://doi.org/10.1094/pd-72-0325 Ploetz, R. C. (1990). Variability in Fusarium oxysporum f.sp. cubense . Canadian Journal of Botany, 68(6), 1357–1363. https://doi.org/10.1139/b90-173 Ploetz, R., & Pegg, K. (1997). Fusarium wilt of banana and Wallace’s line: Was the disease originally restricted to his Indo-Malayan region? Australasian Plant Pathology. https://doi.org/10.1071/AP97039 Ploetz, Randy C. (2015). Management of Fusarium wilt of banana: A review with special reference to tropical race 4. Crop Protection. https://doi.org/10.1016/j.cropro.2015.01.007 Ploetz, Randy C. (2006). Fusarium-induced diseases of tropical, perennial crops. Phytopathology, 96(6), 648–652. https://doi.org/10.1094/PHYTO-96-0648 Raeder, U., & Broda, P. (1985). Rapid preparation of DNA from filamentous fungi. Letters in Applied Microbiology, 1(1), 17–20. https://doi.org/10.1111/j.1472-765X.1985.tb01479.x Smith, E. (1910). A Cuban banana disease. Science , 31 ( 1910 ) , págs. 746 - 757 Snyder & Hansen, H. N., W. C. (1940). The Species Concept in Fusarium Author ( s ): W . C . Snyder and H . N . Hansen P. American Journal of Botany, 27(2), 64–67. https://doi.org/10.1002/j.1537-2197.1940.tb14217.x C Summerell, B. A. (2019). Resolving Fusarium : Current Status of the Genus. Annual Review of Phytopathology, 57(1), 323–339. https://doi.org/10.1146/annurev-phyto-082718-100204 Weising, K., Kaemmer, D., Epplen, J. T., Weigand, F., Saxena, M., & Kahl, G. (1991). DNA fingerprinting of Ascochyta rabiei with synthetic oligodeoxynucleotides. Current Genetics, 19(6), 483–489. https://doi.org/10.1007/BF00312740 White, T. J., Bruns, T., Lee, S., & Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols. https://doi.org/10.1016/b978-0-12-372180-8.50042-1 |
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Universidad Nacional de Colombia |
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Medellín - Ciencias - Maestría en Ciencias - Biotecnología |
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Escuela de biociencias |
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Facultad de Ciencias |
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Medellín, Colombia |
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Universidad Nacional de Colombia - Sede Medellín |
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Universidad Nacional de Colombia |
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https://repositorio.unal.edu.co/bitstream/unal/82353/3/license.txt https://repositorio.unal.edu.co/bitstream/unal/82353/4/1090424173.2021.pdf |
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Repositorio Institucional Universidad Nacional de Colombia |
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Atribución-NoComercial-SinDerivadas 4.0 Internacionalhttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Arango Isaza, Rafael Eduardob7e61322453072ebf7408a0f587e39c1Saldamando Benjumea, Clara Inéseb84ab30edba9019a94e8184c42a2d41Vásquez Barajas, Dayana Andrea327c012bd732581abeedb8e4b8136a9e600Biotecnología Vegetal Unalmed Cib2022-10-05T13:38:27Z2022-10-05T13:38:27Z2021-04https://repositorio.unal.edu.co/handle/unal/82353Universidad Nacional de ColombiaRepositorio Institucional Universidad Nacional de Colombiahttps://repositorio.unal.edu.co/ilustraciones, diagramas, mapas, tablasFusarium oxysporum f. sp. cubense (Foc), es el agente causal de la enfermedad conocida como Marchitamiento por Fusarium en cultivos de musáceas. Es una de las mayores limitantes en la producción mundial de banano y plátano. En Colombia, es escasa la información genética sobre el fitopatógeno y tras la problemática presentada en los años 50 que afecto la variedad de cultivar Gros Michel, este trabajo tuvo como objeto hacer una caracterización morfológica y genética de diversos aislamientos de Fusarium adquiridos a partir de un muestreo de cultivos de banano y plátano en 11 departamentos de Colombia. Para ello, se procesaron 121 muestras sintomáticas de las que se obtuvieron 89 aislamientos que conformaron un banco de cepas, que se caracterizó morfológica y genéticamente, amplificando y secuenciando los genes (Espaciador Transcripto Interno) ITS, (Factor de Elongación 1 α) EF 1α y (Segunda subunidad larga de la RNA polimerasa) RPB2. De estos aislamientos, 88 presentaron estructuras de reproducción y resistencia, típicas del género Fusarium y la identidad genética de las cepas, se corroboro mediante la amplificación de un fragmento específico de la región ITS, con los cebadores ITS FU para el género de interés y simultáneamente, 54 aislamientos se determinaron como Fusarium oxysporum f. sp. cubense (Foc). Además, las amplificaciones de los marcadores moleculares confirmaron que los hongos estaban relacionados con el género y el complejo de especie Fusarium oxysporum (FOSC) e incluso se encontraron los complejos de especie Fusarium fujikuroi (FFSC), Fusarium solani (FSSC) y Fusarium incarnatum-equiseti (FIESC). En el estudio solo se alcanzó a diferenciar entre complejos de especies comúnmente hallados en los cultivos de musáceas, debido a que los cebadores no son lo suficientemente informativos para discernir entre las razas referidas para la forma especial cubense, pero si para rastrear la presencia de 6 haplotipos de Foc genéticamentente diferentes distribuidos en Colombia, los cuales deberán ser evaluados mediante infección en plantas para establecer su patogenicidad. (Texto tomado de la fuente)Fusarium oxysporum f. sp. cubense (Foc), is the causal agent of the disease known as Fusarium wilt in musaceous crops. It is one of the major limiting factors in the world production of banana and plantain. In Colombia, genetic information on the phytopathogen is scarce and after the problem presented in the 1950s that affected the cultivar Gros Michel, this work was aimed at making a morphological and genetic characterization of various isolates of Fusarium acquired from a sampling of banana and plantain crops in 11 departments of Colombia. For this purpose, 121 symptomatic samples were processed from which 89 isolates were obtained to form a bank of strains, which were morphologically and genetically characterized, amplifying and sequencing the genes (Internal Transcribed Spacer Internal Transcript) ITS, (Elongation Factor 1 α) EF 1α and (Second long subunit of RNA polymerase) RPB2. Of these isolates, 88 showed breeding and resistance structures typical of the genus Fusarium and the genetic identity of the strains was corroborated by amplification of a specific fragment of the ITS region with the ITS FU primers for the genus of interest and simultaneously, 54 isolates were determined as Fusarium oxysporum f. sp. cubense (Foc). In addition, amplifications of the molecular markers confirmed that the fungi were related to the genus and the esecie complex Fusarium oxysporum (FOSC) and even the species complexes Fusarium fujikuroi (FFSC), Fusarium solani (FSSC) and Fusarium incarnatum-equiseti (FIESC) were found. The study was only able to differentiate between species complexes commonly found in musacaea cultures, because the primers are not sufficiently informative to discern between the races referred to for the cubense special form, but to trace the presence of 6 genetically different Foc haplotypes distributed in Colombia, which should be evaluated by infection in plants to establish their pathogenicity.MaestríaMagister en Ciencias - BiotecnologíaPatógenos de bananoÁrea Curricular Biotecnologíaxvi, 147 páginasapplication/pdfspaUniversidad Nacional de ColombiaMedellín - Ciencias - Maestría en Ciencias - BiotecnologíaEscuela de biocienciasFacultad de CienciasMedellín, ColombiaUniversidad Nacional de Colombia - Sede Medellín630 - Agricultura y tecnologías relacionadas::632 - Lesiones, enfermedades, plagas vegetales660 - Ingeniería químicaBanano - Enfermedades y plagasBiotecnología agrícolaBanana - disease and pestsMusáceasFitopatógenoMarchitez por FusariumITSEF 1αRPB2Fusarium oxysporum f. sp. cubenseMusaceaePhytopathogenFusarium wiltEstudio de la diversidad molecular de Fusarium oxysporum f. sp. cubense presente en ColombiaStudy molecular diversity of Fusarium oxysporum f. sp. cubense present in ColombiaTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/acceptedVersionTexthttp://purl.org/redcol/resource_type/TMAbd-Elsalam, K. A., Aly, I. N., Abdel-Satar, M. A., Khalil, M. S., & Verreet, J. A. (2003). PCR identification of Fusarium genus based on nuclear ribosomal-DNA sequence data. African Journal of Biotechnology, 2(4), 82–85. https://doi.org/10.4314/AJB.V2I4.14830Achari, S. R., Kaur, J., Dinh, Q., Mann, R., Sawbridge, T., Summerell, B. A., & Edwards, J. (2020). Phylogenetic relationship between Australian Fusarium oxysporum isolates and resolving the species complex using the multispecies coalescent model. BMC Genomics, 21(1), 248. https://doi.org/10.1186/s12864-020-6640-yAdame-García, J., Rodriguez-Guerra, R., Iglesias-Andreu, L. G., Ramos-Prado, J. M., & Luna-Rodríguez, M. (2015). Molecular identification and pathogenic variation of fusarium species isolated from Vanilla planifolia in Papantla Mexico. Botanical Sciences, 93(3), 669–678. https://doi.org/10.17129/botsci.142Aguilar-Hawod, K. G. I., de la Cueva, F. M., & Cumagun, C. J. R. (2020). 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Infection, Genetics and Evolution, 11(3), 533–542. https://doi.org/10.1016/j.meegid.2011.01.012Fourie, Gerda, Steenkamp, E. T., Gordon, T. R., & Viljoen, A. (2009). Evolutionary relationships among the Fusarium oxysporum f. sp. cubense vegetative compatibility groups. Applied and Environmental Microbiology. https://doi.org/10.1128/AEM.00370-09Geiser, D. M., Aoki, T., Bacon, C. W., Baker, S. E., Bhattacharyya, M. K., Brandt, M. E., Brown, D. W., Burgess, L. W., Chulze, S., Coleman, J. J., Correll, J. C., Covert, S. F., Crous, P. W., Cuomo, C. A., De Hoog, G. S., Di Pietro, A., Elmer, W. H., Epstein, L., Frandsen, R. J. N., … Zhang, N. (2013). One fungus, one name: Defining the genus Fusarium in a scientifically robust way that preserves longstanding use. Phytopathology. https://doi.org/10.1094/PHYTO-07-12-0150-LEGordon, T. R., & Martyn, R. D. (1997). THE EVOLUTIONARY BIOLOGY OF FUSARIUM OXYSPORUM . Annual Review of Phytopathology, 35(1), 111–128. https://doi.org/10.1146/annurev.phyto.35.1.111Groenewald, S., Van Den Berg, N., Marasas, W. F. O., & Viljoen, A. (2006). Biological, physiological and pathogenic variation in a genetically homogenous population of Fusarium oxysporum f.sp. cubense. Australasian Plant Pathology, 35(4), 401–409. https://doi.org/10.1071/AP06041Hennessy, C., Walduck, G., Daly, A., & Padovan, A. (2005). Weed hosts of Fusarium oxysporum f. sp. cubense tropical race 4 in northern Australia. Australasian Plant Pathology, 34(1), 115–117. https://doi.org/10.1071/AP04091Islam, S. (2015). Establishment and Characterization of An Unique Fusarium oxysporum f . sp . cubense Collection From Affected Musa Cultivars in Peru Establishment and Characterization of An Unique Fusarium oxysporum f . sp . cubense Collection From Affected Musa Cultivars. 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Genetic Diversity in FUB Genes of Fusarium oxysporum f. sp. cubense Suggests Horizontal Gene Transfer. Frontiers in Plant Science, 10, 1069. https://doi.org/10.3389/fpls.2019.01069Llorens, A., Hinojo, M. J., Mateo, R., González-Jaén, M. T., Valle-Algarra, F. M., Logrieco, A., & Jiménez, M. (2006). Characterization of Fusarium spp. isolates by PCR-RFLP analysis of the intergenic spacer region of the rRNA gene (rDNA). International Journal of Food Microbiology, 106(3), 297–306. https://doi.org/10.1016/j.ijfoodmicro.2005.09.005Lombard L, Sandoval-Denis M, Lamprecht SC, Crous PW. Epitypification of Fusarium oxysporum - clearing the taxonomic chaos. Persoonia. (2019);43:1-47. doi: 10.3767/persoonia.2019.43.01. Epub 2018 Dec 18. PMID: 32214496; PMCID: PMC7085860Ma, L.-J., Geiser, D. M., Proctor, R. H., Rooney, A. P., O’Donnell, K., Trail, F., Gardiner, D. M., Manners, J. M., & Kazan, K. (2013). Fusarium Pathogenomics . Annual Review of Microbiology. https://doi.org/10.1146/annurev-micro-092412-155650Magdama, F., Monserrate-Maggi, L., Serrano, L., Onofre, J. G., & Del Mar Jiménez-Gasco, M. (2020). Genetic Diversity of Fusarium oxysporum f. sp. cubense, the Fusarium Wilt Pathogen of Banana, in Ecuador. https://doi.org/10.3390/plants9091133Magdama, F., Monserrate-Maggi, L., Serrano, L., Sosa, D., Geiser, D. M., & Jiménez-Gasco, M. del M. (2019). Comparative analysis uncovers the limitations of current molecular detection methods for Fusarium oxysporum f. sp. cubense Race 4 strains. PLoS ONE, 14(9). https://doi.org/10.1371/journal.pone.0222727Maryani, N., Lombard, L., Poerba, Y. S., Subandiyah, S., Crous, P. W., & Kema, G. H. J. (2019). Phylogeny and genetic diversity of the banana Fusarium wilt pathogen Fusarium oxysporum f. sp. cubense in the Indonesian centre of origin. 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In PCR Protocols. https://doi.org/10.1016/b978-0-12-372180-8.50042-1EstudiantesInvestigadoresMaestrosLICENSElicense.txtlicense.txttext/plain; charset=utf-85879https://repositorio.unal.edu.co/bitstream/unal/82353/3/license.txteb34b1cf90b7e1103fc9dfd26be24b4aMD53ORIGINAL1090424173.2021.pdf1090424173.2021.pdfTesis de Maestría en Ciencias - Biotecnologíaapplication/pdf10766673https://repositorio.unal.edu.co/bitstream/unal/82353/4/1090424173.2021.pdffe26cba593be90647cff3e6bbc55d370MD54unal/82353oai:repositorio.unal.edu.co:unal/823532023-03-14 14:28:46.392Repositorio Institucional Universidad Nacional de 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