Quantification of cardiac patterns using a spatio-temporal analysis of the right ventricle in magnetic resonance imaging

Abstract. An accurate quantification of the right ventricular function is important to support the evaluation, diagnosis and prognosis of several cardiac diseases, as well to complement the analysis of the left ventricular function. Traditionally, this quantification is performed by the manual delin...

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Autores:
Atehortúa Labrador, Angelica María
Tipo de recurso:
Fecha de publicación:
2014
Institución:
Universidad Nacional de Colombia
Repositorio:
Universidad Nacional de Colombia
Idioma:
spa
OAI Identifier:
oai:repositorio.unal.edu.co:unal/52020
Acceso en línea:
https://repositorio.unal.edu.co/handle/unal/52020
http://bdigital.unal.edu.co/46269/
Palabra clave:
0 Generalidades / Computer science, information and general works
61 Ciencias médicas; Medicina / Medicine and health
Right ventricle segmentation
Local motion model
Structural information
Non rigid registration
Cardiac patterns
Segmentación del ventrículo derecho
Modelo de movimiento local
Información estructural
Registro no rígido
Patrones cardíacos
Rights
openAccess
License
Atribución-NoComercial 4.0 Internacional
id UNACIONAL2_116877214093761034ac01df12f2d4b3
oai_identifier_str oai:repositorio.unal.edu.co:unal/52020
network_acronym_str UNACIONAL2
network_name_str Universidad Nacional de Colombia
repository_id_str
dc.title.spa.fl_str_mv Quantification of cardiac patterns using a spatio-temporal analysis of the right ventricle in magnetic resonance imaging
title Quantification of cardiac patterns using a spatio-temporal analysis of the right ventricle in magnetic resonance imaging
spellingShingle Quantification of cardiac patterns using a spatio-temporal analysis of the right ventricle in magnetic resonance imaging
0 Generalidades / Computer science, information and general works
61 Ciencias médicas; Medicina / Medicine and health
Right ventricle segmentation
Local motion model
Structural information
Non rigid registration
Cardiac patterns
Segmentación del ventrículo derecho
Modelo de movimiento local
Información estructural
Registro no rígido
Patrones cardíacos
title_short Quantification of cardiac patterns using a spatio-temporal analysis of the right ventricle in magnetic resonance imaging
title_full Quantification of cardiac patterns using a spatio-temporal analysis of the right ventricle in magnetic resonance imaging
title_fullStr Quantification of cardiac patterns using a spatio-temporal analysis of the right ventricle in magnetic resonance imaging
title_full_unstemmed Quantification of cardiac patterns using a spatio-temporal analysis of the right ventricle in magnetic resonance imaging
title_sort Quantification of cardiac patterns using a spatio-temporal analysis of the right ventricle in magnetic resonance imaging
dc.creator.fl_str_mv Atehortúa Labrador, Angelica María
dc.contributor.author.spa.fl_str_mv Atehortúa Labrador, Angelica María
dc.contributor.spa.fl_str_mv Romero Castro, Edgar Eduardo
dc.subject.ddc.spa.fl_str_mv 0 Generalidades / Computer science, information and general works
61 Ciencias médicas; Medicina / Medicine and health
topic 0 Generalidades / Computer science, information and general works
61 Ciencias médicas; Medicina / Medicine and health
Right ventricle segmentation
Local motion model
Structural information
Non rigid registration
Cardiac patterns
Segmentación del ventrículo derecho
Modelo de movimiento local
Información estructural
Registro no rígido
Patrones cardíacos
dc.subject.proposal.spa.fl_str_mv Right ventricle segmentation
Local motion model
Structural information
Non rigid registration
Cardiac patterns
Segmentación del ventrículo derecho
Modelo de movimiento local
Información estructural
Registro no rígido
Patrones cardíacos
description Abstract. An accurate quantification of the right ventricular function is important to support the evaluation, diagnosis and prognosis of several cardiac diseases, as well to complement the analysis of the left ventricular function. Traditionally, this quantification is performed by the manual delineation of the right ventricle (RV), a time consuming task that introduces high inter and intra observer variability. Different semi-automatic and fully-automatic a- pproaches have been proposed to delineate the RV. Nevertheless, most of these methods, e.g multi-atlas strategies and approaches with training of parameters, are strongly dependent on RV shapes present in the training set utilized. This thesis presents a fully automatic segmentation strategy of the RV in MRI-cardiac sequences to quantify cardiac patterns. Unlike multi-atlas methods, the proposed strategy estimates the RV using exclusively information from the sequence itself. The core of this work is a spatio-temporal analysis that is per- formed by using a motion descriptor and anatomical heart information, taking advantage of natural heart dynamic. This strategy was improved from two perspectives: 1) by introducing a prior regularizer term that smooths the obtained delineation and 2) by propagating the spatio-temporal segmentation from the basal slice to apex using a non-rigid registration. The proposed approach achieves an average Dice Score of 0.78 evaluated in a set of 48 patients.
publishDate 2014
dc.date.issued.spa.fl_str_mv 2014
dc.date.accessioned.spa.fl_str_mv 2019-06-29T13:20:39Z
dc.date.available.spa.fl_str_mv 2019-06-29T13:20:39Z
dc.type.spa.fl_str_mv Trabajo de grado - Maestría
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/masterThesis
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/acceptedVersion
dc.type.content.spa.fl_str_mv Text
dc.type.redcol.spa.fl_str_mv http://purl.org/redcol/resource_type/TM
status_str acceptedVersion
dc.identifier.uri.none.fl_str_mv https://repositorio.unal.edu.co/handle/unal/52020
dc.identifier.eprints.spa.fl_str_mv http://bdigital.unal.edu.co/46269/
url https://repositorio.unal.edu.co/handle/unal/52020
http://bdigital.unal.edu.co/46269/
dc.language.iso.spa.fl_str_mv spa
language spa
dc.relation.ispartof.spa.fl_str_mv Universidad Nacional de Colombia Sede Bogotá Facultad de Ingeniería Departamento de Ingeniería de Sistemas e Industrial
Departamento de Ingeniería de Sistemas e Industrial
dc.relation.references.spa.fl_str_mv Atehortúa Labrador, Angelica María (2014) Quantification of cardiac patterns using a spatio-temporal analysis of the right ventricle in magnetic resonance imaging. Maestría thesis, Universidad Nacional de Colombia.
dc.rights.spa.fl_str_mv Derechos reservados - Universidad Nacional de Colombia
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.license.spa.fl_str_mv Atribución-NoComercial 4.0 Internacional
dc.rights.uri.spa.fl_str_mv http://creativecommons.org/licenses/by-nc/4.0/
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv Atribución-NoComercial 4.0 Internacional
Derechos reservados - Universidad Nacional de Colombia
http://creativecommons.org/licenses/by-nc/4.0/
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.mimetype.spa.fl_str_mv application/pdf
institution Universidad Nacional de Colombia
bitstream.url.fl_str_mv https://repositorio.unal.edu.co/bitstream/unal/52020/1/40341141.2014.pdf
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repository.name.fl_str_mv Repositorio Institucional Universidad Nacional de Colombia
repository.mail.fl_str_mv repositorio_nal@unal.edu.co
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spelling Atribución-NoComercial 4.0 InternacionalDerechos reservados - Universidad Nacional de Colombiahttp://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Romero Castro, Edgar EduardoAtehortúa Labrador, Angelica Maríaf51e0418-177d-4738-9336-c5e255079cff3002019-06-29T13:20:39Z2019-06-29T13:20:39Z2014https://repositorio.unal.edu.co/handle/unal/52020http://bdigital.unal.edu.co/46269/Abstract. An accurate quantification of the right ventricular function is important to support the evaluation, diagnosis and prognosis of several cardiac diseases, as well to complement the analysis of the left ventricular function. Traditionally, this quantification is performed by the manual delineation of the right ventricle (RV), a time consuming task that introduces high inter and intra observer variability. Different semi-automatic and fully-automatic a- pproaches have been proposed to delineate the RV. Nevertheless, most of these methods, e.g multi-atlas strategies and approaches with training of parameters, are strongly dependent on RV shapes present in the training set utilized. This thesis presents a fully automatic segmentation strategy of the RV in MRI-cardiac sequences to quantify cardiac patterns. Unlike multi-atlas methods, the proposed strategy estimates the RV using exclusively information from the sequence itself. The core of this work is a spatio-temporal analysis that is per- formed by using a motion descriptor and anatomical heart information, taking advantage of natural heart dynamic. This strategy was improved from two perspectives: 1) by introducing a prior regularizer term that smooths the obtained delineation and 2) by propagating the spatio-temporal segmentation from the basal slice to apex using a non-rigid registration. The proposed approach achieves an average Dice Score of 0.78 evaluated in a set of 48 patients.Resumen. Una precisa cuantificación de la función ventricular derecha es importante para soportar la evaluación, diagnóstico y pronosticó de varias enfermedades cardíacas, como también para complementar el análisis de la función ventricular izquierda. Tradicionalmente, esta cuantificación se realiza mediante la alineación manual del ventrículo derecho (VD), una tarea que consume tiempo e introduce gran variabilidad inter e intra observador. Diferentes enfoques semi y totalmente automáticos han sido propuestos para delinear el VD. No obstante, la mayoría de estos métodos, por ejemplo estrategias multi-atlas y enfoques con entrenamiento de parámetros, son fuertemente dependientes de las formas del VD existentes en el conjunto de entrenamiento utilizado. Esta tesis presenta una estrategia de segmentación totalmente automática del ventrículo derecho en secuencias de resonancia magnética cardiacas para cuantificar patrones cardiacos. A diferencia de métodos multi-atlas, la estrategia propuesta estima el VD usando exclusivamente información de la misma secuencia. El centro de este trabajo es un análisis espacio-temporal que se lleva a cabo mediante un descriptor de movimiento y la información anatómica del corazón, aprovechando la dinámica natural del corazón. Esta estrategia fue mejorada desde dos perspectivas: 1) introduciendo un término regularizador previo que suaviza la delineación obtenida y 2) propagando la segmentación espacio-temporal del corte basal hacia al ápex usando un registro no rígido. El enfoque propuesto logra un Dice Score promedio de 0.78 evaluado en un conjunto de 48 pacientes.Maestríaapplication/pdfspaUniversidad Nacional de Colombia Sede Bogotá Facultad de Ingeniería Departamento de Ingeniería de Sistemas e IndustrialDepartamento de Ingeniería de Sistemas e IndustrialAtehortúa Labrador, Angelica María (2014) Quantification of cardiac patterns using a spatio-temporal analysis of the right ventricle in magnetic resonance imaging. Maestría thesis, Universidad Nacional de Colombia.0 Generalidades / Computer science, information and general works61 Ciencias médicas; Medicina / Medicine and healthRight ventricle segmentationLocal motion modelStructural informationNon rigid registrationCardiac patternsSegmentación del ventrículo derechoModelo de movimiento localInformación estructuralRegistro no rígidoPatrones cardíacosQuantification of cardiac patterns using a spatio-temporal analysis of the right ventricle in magnetic resonance imagingTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/acceptedVersionTexthttp://purl.org/redcol/resource_type/TMORIGINAL40341141.2014.pdfapplication/pdf6226738https://repositorio.unal.edu.co/bitstream/unal/52020/1/40341141.2014.pdf43b9c09ad09dfa09e6b31f9691067d63MD51THUMBNAIL40341141.2014.pdf.jpg40341141.2014.pdf.jpgGenerated Thumbnailimage/jpeg4881https://repositorio.unal.edu.co/bitstream/unal/52020/2/40341141.2014.pdf.jpg0f1e1061b7ed47b4ca623e567f6bc7e3MD52unal/52020oai:repositorio.unal.edu.co:unal/520202024-02-29 23:08:28.027Repositorio Institucional Universidad Nacional de Colombiarepositorio_nal@unal.edu.co