Detección y caracterización molecular de begomovirus, potyvirus y cucumovirus presentes en arvenses asociadas al cultivo de ají (Capsicum spp.) en el Valle del Cauca
En los ecosistemas agrícolas las arvenses juegan un papel importante en la epidemiología viral como hospederas alternas de virus en la transitoriedad de los cultivos. El objetivo de este trabajo fue detectar e identificar begomovirus, potyvirus y cucumovirus en arvenses asociadas al cultivo de ají e...
- Autores:
-
Corredor Rodríguez, Andrea
- Tipo de recurso:
- Informe
- Fecha de publicación:
- 2019
- Institución:
- Universidad Nacional de Colombia
- Repositorio:
- Universidad Nacional de Colombia
- Idioma:
- spa
- OAI Identifier:
- oai:repositorio.unal.edu.co:unal/78065
- Acceso en línea:
- https://repositorio.unal.edu.co/handle/unal/78065
- Palabra clave:
- 570 - Biología
630 - Agricultura y tecnologías relacionadas
Arvenses
Begomovirus
Potyvirus
Cucumovirus
Infecciones mixtas
Weeds
Begomovirus
Potyvirus
Cucumovirus
Mixed infections
- Rights
- openAccess
- License
- Atribución-NoComercial 4.0 Internacional
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| dc.title.spa.fl_str_mv |
Detección y caracterización molecular de begomovirus, potyvirus y cucumovirus presentes en arvenses asociadas al cultivo de ají (Capsicum spp.) en el Valle del Cauca |
| title |
Detección y caracterización molecular de begomovirus, potyvirus y cucumovirus presentes en arvenses asociadas al cultivo de ají (Capsicum spp.) en el Valle del Cauca |
| spellingShingle |
Detección y caracterización molecular de begomovirus, potyvirus y cucumovirus presentes en arvenses asociadas al cultivo de ají (Capsicum spp.) en el Valle del Cauca 570 - Biología 630 - Agricultura y tecnologías relacionadas Arvenses Begomovirus Potyvirus Cucumovirus Infecciones mixtas Weeds Begomovirus Potyvirus Cucumovirus Mixed infections |
| title_short |
Detección y caracterización molecular de begomovirus, potyvirus y cucumovirus presentes en arvenses asociadas al cultivo de ají (Capsicum spp.) en el Valle del Cauca |
| title_full |
Detección y caracterización molecular de begomovirus, potyvirus y cucumovirus presentes en arvenses asociadas al cultivo de ají (Capsicum spp.) en el Valle del Cauca |
| title_fullStr |
Detección y caracterización molecular de begomovirus, potyvirus y cucumovirus presentes en arvenses asociadas al cultivo de ají (Capsicum spp.) en el Valle del Cauca |
| title_full_unstemmed |
Detección y caracterización molecular de begomovirus, potyvirus y cucumovirus presentes en arvenses asociadas al cultivo de ají (Capsicum spp.) en el Valle del Cauca |
| title_sort |
Detección y caracterización molecular de begomovirus, potyvirus y cucumovirus presentes en arvenses asociadas al cultivo de ají (Capsicum spp.) en el Valle del Cauca |
| dc.creator.fl_str_mv |
Corredor Rodríguez, Andrea |
| dc.contributor.advisor.spa.fl_str_mv |
López López, Karina Vaca Vaca, Juan Carlos |
| dc.contributor.author.spa.fl_str_mv |
Corredor Rodríguez, Andrea |
| dc.contributor.researchgroup.spa.fl_str_mv |
IPMA Interacción Planta -Microorganismo -Ambiente |
| dc.subject.ddc.spa.fl_str_mv |
570 - Biología 630 - Agricultura y tecnologías relacionadas |
| topic |
570 - Biología 630 - Agricultura y tecnologías relacionadas Arvenses Begomovirus Potyvirus Cucumovirus Infecciones mixtas Weeds Begomovirus Potyvirus Cucumovirus Mixed infections |
| dc.subject.proposal.spa.fl_str_mv |
Arvenses Begomovirus Potyvirus Cucumovirus Infecciones mixtas |
| dc.subject.proposal.eng.fl_str_mv |
Weeds Begomovirus Potyvirus Cucumovirus Mixed infections |
| description |
En los ecosistemas agrícolas las arvenses juegan un papel importante en la epidemiología viral como hospederas alternas de virus en la transitoriedad de los cultivos. El objetivo de este trabajo fue detectar e identificar begomovirus, potyvirus y cucumovirus en arvenses asociadas al cultivo de ají en el Valle del Cauca. Se analizaron 121 arvenses asintomáticas o con posibles síntomas de tipo viral, recolectadas en siete municipios ubicados en el norte, centro y sur del departamento. Se realizó la extracción de ácidos nucleicos (DNA y RNA), y se detectó la presencia de los virus mediante PCR y RT-PCR, empleando cebadores generales para cada género, y específicos para cada especie viral. Se realizó la amplificación y clonación de un fragmento begomoviral de aproximadamente 1,4 kb en el vector comercial pGEM. Luego, se realizó la transformación por choque térmico en E. coli, secuenciación y análisis bioinformáticos. Se detectaron begomovirus en el 21,5% de las muestras colectadas, potyvirus en el 20,6%, y cucumovirus en el 21,5%. Se identificaron los begomovirus, RhGMCV, PYMV/Co, PRMV y PLDV; en arvenses de las familias botánicas Compositae, Convolvulaceae, Cucurbitaceae, Euphorbiaceae, Leguminosae, Lythraceae, Malvaceae, Phytolaccaceae, Poaceae o Solanaceae. El potyvirus PepSMoV y el cucumovirus CMV-ají, fueron identificados en arvenses pertenecientes a las familias Amaranthaceae, Campanulaceae, Commelinaceae, Compositae, Leguminosae, Malvaceae, Nyctaginaceae, Phytolaccaceae, Solanaceae o Verbenaceae. También se encontraron infecciones simples y mixtas entre virus RNA y DNA. Adicionalmente, Panicum polygonatum se reporta como la primera especie monocotiledónea a nivel mundial en albergar begomovirus bipartitas. Por último, la caracterización parcial del begomovirus aislado en la arvense U-157 (Verbenaceae), indica que es una entidad begomoviral distinta a las reportadas en la actualidad a nivel mundial. |
| publishDate |
2019 |
| dc.date.issued.spa.fl_str_mv |
2019-12-14 |
| dc.date.accessioned.spa.fl_str_mv |
2020-08-18T16:15:10Z |
| dc.date.available.spa.fl_str_mv |
2020-08-18T16:15:10Z |
| dc.type.spa.fl_str_mv |
Documento de trabajo |
| dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_8042 |
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info:eu-repo/semantics/workingPaper |
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info:eu-repo/semantics/publishedVersion |
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http://purl.org/coar/resource_type/c_93fc |
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http://purl.org/coar/version/c_970fb48d4fbd8a85 |
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Text |
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http://purl.org/redcol/resource_type/WP |
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(Morales et al., 1990) |
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https://repositorio.unal.edu.co/handle/unal/78065 |
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(Morales et al., 1990) |
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https://repositorio.unal.edu.co/handle/unal/78065 |
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spa |
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spa |
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(2004). Characterization and genetic diversity of Potato yellow mosaic virus from the Caribbean. Archives of Virology, 149(2), 417–424. https://doi.org/10.1007/s00705-003-0220-8 Urcuqui-Inchima, S., Haenni, A. L., & Bernardi, F. (2001). Potyvirus proteins: A wealth of functions. Virus Research, 74(1–2), 157–175. https://doi.org/10.1016/S0168-1702(01)00220-9 Vaca-Vaca, J. C., Betancur-Pérez, J. F., & López-López, K. (2012). Distribución y diversidad genética de Begomovirus que infectan tomate (Solanum lycopersicum L) en Colombia. Revista Colombiana de Biotecnología, 14(1), 60–76. Retrieved from http://www.scielo.org.co/scielo.php?script=sci_arttext&pid=S0123-34752012000100007&nrm=iso Vaca-Vaca, J. C., Carrasco-Lozano, E. C., & López-López, K. (2016). Molecular identification of a new begomovirus infecting yellow passion fruit (Passiflora edulis) in Colombia. Archives of Virology, 162(2), 573–576. https://doi.org/10.1007/s00705-016-3098-y Vaca-Vaca, J. C., Carrasco-Lozano, E. C., Rodríguez-Rodríguez, M., Betancur-Perez, J. F., & López-López, K. (2016). Primer reporte de un begomovirus presente en maracuyá amarillo [Passiflora edulis f. flavicarpa (Degener)] en Valle del Cauca, Colombia. Revista Colombiana de Biotecnología, 18(2), 56. https://doi.org/10.15446/rev.colomb.biote.v18n2.52904 Vaca-Vaca, J. C., Corredor-Saenz, V., Jara-Tejada, F., Betancourt-Andrade, D., & López-López, K. (2019). Nuevos hospederos alternativos de begomovirus asociados al cultivo de ají en el Valle del Cauca. Acta Agronómica, 68(1), 56–60. https://doi.org/10.15446/acag.v68n1.77487 Vaca-Vaca, J. C., Jara-Tejada, F., & López-López, K. (2018). Croton golden mosaic virus: a new bipartite begomovirus isolated from Croton hirtus in Colombia. Archives of Virology. https://doi.org/10.1007/s00705-018-3989-1 Vaca-Vaca, J. C., Morales-Euse, J., Rivera-Toro, D. M., & López-López, K. (2019). Primer reporte de begomovirus infectando cultivos de ají (Capsicum spp.) en Colombia. Acta Biológica Colombiana, 24(3), 452–462. Vaca-Vaca, J. C., Otavo-Fiscal, D., & López-López, K. (2011). Identificación de arvenses como hospederos naturales de Begomovirus en el Valle del Cauca, Colombia. Revista Fitopatología Colombiana, 35, 69–72. Van der Walt, E., Rybicki, E. P., Varsani, A., Polston, J. E., Billharz, R., Donaldson, L., … Martin, D. P. (2009). Rapid host adaptation by extensive recombination. Journal of General Virology, 90(3), 734–746. https://doi.org/10.1099/vir.0.007724-0 Vanni, R. O. (2001). El género Desmodium (Leguminosae, Desmodieae) en Argentina. Darwiniana, 39(3–4), 255–285. Varsani, A., Navas-Castillo, J., Moriones, E., Hernández-Zepeda, C., Idris, A., Brown, J. K., … Martin, D. P. (2014). Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus. Archives of Virology, 159(8), 2193–2203. https://doi.org/10.1007/s00705-014-2050-2 Velásquez-Valle, R., Reveles-Torres, L. R., Chew-Madinaveitia, Y. I., & Mauricio-Castillo, J. A. (2013). Virus y fitoplasmas asociados con el cultivo de chile para secado en el Norte Centro de México. In Folleto tecnico (1st ed., Vol. 49). https://doi.org/10.1109/CCA.2016.7587921 Wang, L., Ding, X., Xiao, J., Jiménez-Gόngora, T., Liu, R., & Lozano-Durán, R. (2017). Inference of a geminivirus−host protein−protein interaction network through affinity purification and mass spectrometry analysis. Viruses, 9(10). https://doi.org/10.3390/v9100275 Wang, Y., Gaba, V., Yang, J., Palukaitis, P., & Gal-On, A. (2002). Characterization of synergy between Cucumber mosaic virus and potyviruses in cucurbit hosts. Phytopathology, 92(1), 51–58. https://doi.org/10.1094/PHYTO.2002.92.1.51 Wege, C., & Siegmund, D. (2007). Synergism of a DNA and an RNA virus: Enhanced tissue infiltration of the begomovirus Abutilon mosaic virus (AbMV) mediated by Cucumber mosaic virus (CMV). Virology, 357(1), 10–28. https://doi.org/10.1016/j.virol.2006.07.043 Wisler, G. C., & Norris, R. 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O., & Betancur, J. (2014). 30. Panicum (Poaceae). In Flora de Colombia (p. 104). Bogotá, Colombia. Zúñiga-Vega, C., & Ramírez, P. (2001). Los geminivirus, patógenos de importancia mundial. Manejo Integrado de Plagas y Agroecología (Costa Rica), (64), 25–33. |
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Atribución-NoComercial 4.0 InternacionalDerechos reservados - Universidad Nacional de ColombiaAcceso abiertohttp://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2López López, Karinac5121ccf-8bcd-4685-912f-6fb98b15cf92-1Vaca Vaca, Juan Carlos7ecbef61-5c93-456c-a9e3-de8dfff0829b-1Corredor Rodríguez, Andreaa0926d1b-39ee-42e0-9d4c-762a58d475a4IPMA Interacción Planta -Microorganismo -Ambiente2020-08-18T16:15:10Z2020-08-18T16:15:10Z2019-12-14(Morales et al., 1990)https://repositorio.unal.edu.co/handle/unal/78065En los ecosistemas agrícolas las arvenses juegan un papel importante en la epidemiología viral como hospederas alternas de virus en la transitoriedad de los cultivos. El objetivo de este trabajo fue detectar e identificar begomovirus, potyvirus y cucumovirus en arvenses asociadas al cultivo de ají en el Valle del Cauca. Se analizaron 121 arvenses asintomáticas o con posibles síntomas de tipo viral, recolectadas en siete municipios ubicados en el norte, centro y sur del departamento. Se realizó la extracción de ácidos nucleicos (DNA y RNA), y se detectó la presencia de los virus mediante PCR y RT-PCR, empleando cebadores generales para cada género, y específicos para cada especie viral. Se realizó la amplificación y clonación de un fragmento begomoviral de aproximadamente 1,4 kb en el vector comercial pGEM. Luego, se realizó la transformación por choque térmico en E. coli, secuenciación y análisis bioinformáticos. Se detectaron begomovirus en el 21,5% de las muestras colectadas, potyvirus en el 20,6%, y cucumovirus en el 21,5%. Se identificaron los begomovirus, RhGMCV, PYMV/Co, PRMV y PLDV; en arvenses de las familias botánicas Compositae, Convolvulaceae, Cucurbitaceae, Euphorbiaceae, Leguminosae, Lythraceae, Malvaceae, Phytolaccaceae, Poaceae o Solanaceae. El potyvirus PepSMoV y el cucumovirus CMV-ají, fueron identificados en arvenses pertenecientes a las familias Amaranthaceae, Campanulaceae, Commelinaceae, Compositae, Leguminosae, Malvaceae, Nyctaginaceae, Phytolaccaceae, Solanaceae o Verbenaceae. También se encontraron infecciones simples y mixtas entre virus RNA y DNA. Adicionalmente, Panicum polygonatum se reporta como la primera especie monocotiledónea a nivel mundial en albergar begomovirus bipartitas. Por último, la caracterización parcial del begomovirus aislado en la arvense U-157 (Verbenaceae), indica que es una entidad begomoviral distinta a las reportadas en la actualidad a nivel mundial.In agricultural ecosystems weeds play an important role in viral epidemiology as alternate hosts of viruses in crop transience. The objective of this work was to detect and identify begomovirus, potyvirus and cucumovirus in weeds associated with the cultivation of chili pepper in the Valle del Cauca. 121 asymptomatic or possible viral weeds were analyzed, collected in seven municipalities located in the north, center and south of the department. Nucleic acid extraction (DNA and RNA) was performed, and the presence of viruses was detected by PCR and RT-PCR, using general and specific primers for each virus genus and species. The amplification and cloning of an approximately 1.4 kb begomoviral fragment was performed in the commercial vector pGEM. Then, heat shock transformation in E. coli, sequencing and bioinformatics analysis was performed. Begomoviruses were detected in 21.5% of the collected samples, potyvirus in 20.6%, and cucumovirus in 21.5%. begomoviruses, RhGMCV, PYMV / Co, PRMV and PLDV were identified; in weeds of the botanical families Compositae, Convolvulaceae, Cucurbitaceae, Euphorbiaceae, Leguminosae, Lythraceae, Malvaceae, Phytolaccaceae, Poaceae or Solanaceae. PepSMoV potyvirus and CMV-pepper cucumovirus were identified in weeds belonging to the Amaranthaceae, Campanulaceae, Commelinaceae, Compositae, Leguminosae, Malvaceae, Nyctaginaceae, Phytolaccaceae, Solanaceae or Verbenaceae families. Simple and mixed infections between RNA and DNA viruses were also found. Additionally, Panicum polygonatum is reported as the first monocot species in the world to house bipartite begomovirus. Finally, the partial characterization of the isolated begomovirus in the U-157 weed (Verbenaceae), indicates that it is a different begomoviral entity than those currently reported worldwide.Centro regional de Investigación en Bio-fotónica e Informática CIBIOFI - Universidad Nacional de Colombia sede PalmiraProyecto No. 7. IDENTIFICACIÓN TAXONÓMICA CON BASE MORFOLÓGICA Y MOLECULAR DE PLAGAS EN DIFERENTES CULTIVOS PRIORITARIOS DE CLASE MUNDIAL PARA CONTRIBUIR AL DISEÑO DE PLANES INTEGRADOS DE MANEJO O A LA OBTENCIÓN DE ESPECIES TOLERANTES. PROYECTO: CARACTERIZACIÓN MOLECULAR DE LA VIROSFERA PRESENTE EN PLANTAS ACOMPAÑANTES DEL CULTIVO DE AJÍ EN VALLE DEL CAUCAMaestría123application/pdfspa570 - Biología630 - Agricultura y tecnologías relacionadasArvensesBegomovirusPotyvirusCucumovirusInfecciones mixtasWeedsBegomovirusPotyvirusCucumovirusMixed infectionsDetección y caracterización molecular de begomovirus, potyvirus y cucumovirus presentes en arvenses asociadas al cultivo de ají (Capsicum spp.) en el Valle del CaucaDocumento de trabajoinfo:eu-repo/semantics/workingPaperinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_93fchttp://purl.org/coar/resource_type/c_8042http://purl.org/coar/version/c_970fb48d4fbd8a85Texthttp://purl.org/redcol/resource_type/WPPalmira - Ciencias Agropecuarias - Maestría en Ciencias BiológicasMaestría en Ciencias BiológicasUniversidad Nacional de Colombia - Sede PalmiraAcela Díaz, M. Q., Arana, F., Soto, M., & Hernández, A. (2010). 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Manejo Integrado de Plagas y Agroecología (Costa Rica), (64), 25–33.ORIGINAL1077844128.2019.pdf1077844128.2019.pdfapplication/pdf3194380https://repositorio.unal.edu.co/bitstream/unal/78065/1/1077844128.2019.pdfd40465c5b61e5378bd17c141831957ecMD51LICENSElicense.txtlicense.txttext/plain; charset=utf-83895https://repositorio.unal.edu.co/bitstream/unal/78065/2/license.txte2f63a891b6ceb28c3078128251851bfMD52THUMBNAIL1077844128.2019.pdf.jpg1077844128.2019.pdf.jpgGenerated Thumbnailimage/jpeg5785https://repositorio.unal.edu.co/bitstream/unal/78065/3/1077844128.2019.pdf.jpg2e6331e1b5cb1e840c51744e00b653f6MD53unal/78065oai:repositorio.unal.edu.co:unal/780652023-07-19 23:03:35.915Repositorio Institucional Universidad Nacional de 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