Prevalence of Mycobacterium avium subsp. paratuberculosis and associated risk factors in dairies under mechanical milking parlor- systems in Antioquia, Colombia

ABSTRACT: The present study aimed to determine Mycobacterium avium subsp. paratuberculosis (MAP) prevalence according to environmental samples and to explore the herd-level risk factors associated to MAP infection in dairy herds under mechanical milking parlor and pasture grazing-based systems. The...

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Autores:
Correa Valencia, Nathalia María del Pilar
Ramírez Vásquez, Nicolás Fernando
Fernández Silva, Jorge Arturo
Tipo de recurso:
Article of investigation
Fecha de publicación:
2022
Institución:
Universidad de Antioquia
Repositorio:
Repositorio UdeA
Idioma:
eng
OAI Identifier:
oai:bibliotecadigital.udea.edu.co:10495/31943
Acceso en línea:
https://hdl.handle.net/10495/31943
Palabra clave:
Ganado Holstein - Friesian
Holstein - Friesian Cattle
Mycobacterium avium subsp. paratuberculosis
Paratuberculosis
Ganado Jersey
http://aims.fao.org/aos/agrovoc/c_37851
http://aims.fao.org/aos/agrovoc/c_16452
Rights
openAccess
License
http://creativecommons.org/licenses/by-nc-sa/2.5/co/
id UDEA2_f889a4e670eb169eb04e7b34e402a42d
oai_identifier_str oai:bibliotecadigital.udea.edu.co:10495/31943
network_acronym_str UDEA2
network_name_str Repositorio UdeA
repository_id_str
dc.title.spa.fl_str_mv Prevalence of Mycobacterium avium subsp. paratuberculosis and associated risk factors in dairies under mechanical milking parlor- systems in Antioquia, Colombia
title Prevalence of Mycobacterium avium subsp. paratuberculosis and associated risk factors in dairies under mechanical milking parlor- systems in Antioquia, Colombia
spellingShingle Prevalence of Mycobacterium avium subsp. paratuberculosis and associated risk factors in dairies under mechanical milking parlor- systems in Antioquia, Colombia
Ganado Holstein - Friesian
Holstein - Friesian Cattle
Mycobacterium avium subsp. paratuberculosis
Paratuberculosis
Ganado Jersey
http://aims.fao.org/aos/agrovoc/c_37851
http://aims.fao.org/aos/agrovoc/c_16452
title_short Prevalence of Mycobacterium avium subsp. paratuberculosis and associated risk factors in dairies under mechanical milking parlor- systems in Antioquia, Colombia
title_full Prevalence of Mycobacterium avium subsp. paratuberculosis and associated risk factors in dairies under mechanical milking parlor- systems in Antioquia, Colombia
title_fullStr Prevalence of Mycobacterium avium subsp. paratuberculosis and associated risk factors in dairies under mechanical milking parlor- systems in Antioquia, Colombia
title_full_unstemmed Prevalence of Mycobacterium avium subsp. paratuberculosis and associated risk factors in dairies under mechanical milking parlor- systems in Antioquia, Colombia
title_sort Prevalence of Mycobacterium avium subsp. paratuberculosis and associated risk factors in dairies under mechanical milking parlor- systems in Antioquia, Colombia
dc.creator.fl_str_mv Correa Valencia, Nathalia María del Pilar
Ramírez Vásquez, Nicolás Fernando
Fernández Silva, Jorge Arturo
dc.contributor.author.none.fl_str_mv Correa Valencia, Nathalia María del Pilar
Ramírez Vásquez, Nicolás Fernando
Fernández Silva, Jorge Arturo
dc.subject.lemb.none.fl_str_mv Ganado Holstein - Friesian
Holstein - Friesian Cattle
topic Ganado Holstein - Friesian
Holstein - Friesian Cattle
Mycobacterium avium subsp. paratuberculosis
Paratuberculosis
Ganado Jersey
http://aims.fao.org/aos/agrovoc/c_37851
http://aims.fao.org/aos/agrovoc/c_16452
dc.subject.agrovoc.none.fl_str_mv Mycobacterium avium subsp. paratuberculosis
Paratuberculosis
dc.subject.proposal.spa.fl_str_mv Ganado Jersey
dc.subject.agrovocuri.none.fl_str_mv http://aims.fao.org/aos/agrovoc/c_37851
http://aims.fao.org/aos/agrovoc/c_16452
description ABSTRACT: The present study aimed to determine Mycobacterium avium subsp. paratuberculosis (MAP) prevalence according to environmental samples and to explore the herd-level risk factors associated to MAP infection in dairy herds under mechanical milking parlor and pasture grazing-based systems. The study herds (n= 94) were located in 60 districts from five municipalities in the Northern region of the province of Antioquia, Colombia. Herds were visited once in 2016 to collect two composite environmental samples and to complete a risk assessment questionnaire. MAP identification was carried out using a quantitative real-time PCR method based on the IS900 sequence. A herd was considered as MAP-positive if one or both of the environmental samples were found positive by the molecular technique. The information on risk factors was analyzed using a multivariable logistic regression model. The apparent herd-level prevalence found was 14.9 % (14/94; 95 % CI: 7.7-22.1), ranging from 0 to 33.3 % at municipality-level. Herds where other than Pure-Holstein breeds were predominant (i.e. Jersey, Jersey crossbreeds) were more likely to be MAP-qPCR positively infected than those on which where pure-Holstein cattle was predominant (OR=3.7; 95 % CI: 1.1-15.2). The present study reports MAP prevalence in dairy herds in the province of Antioquia (Colombia), and the association between MAP environmental positivity with the predominant breed in the herd.
publishDate 2022
dc.date.accessioned.none.fl_str_mv 2022-11-10T17:19:06Z
dc.date.available.none.fl_str_mv 2022-11-10T17:19:06Z
dc.date.issued.none.fl_str_mv 2022
dc.type.spa.fl_str_mv info:eu-repo/semantics/article
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.hasversion.spa.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.coar.spa.fl_str_mv http://purl.org/coar/resource_type/c_2df8fbb1
dc.type.redcol.spa.fl_str_mv https://purl.org/redcol/resource_type/ART
dc.type.local.spa.fl_str_mv Artículo de investigación
format http://purl.org/coar/resource_type/c_2df8fbb1
status_str publishedVersion
dc.identifier.issn.none.fl_str_mv 2007-1124
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/10495/31943
dc.identifier.doi.none.fl_str_mv 10.22319/rmcp.v13i3.5776
dc.identifier.eissn.none.fl_str_mv 2448-6698
identifier_str_mv 2007-1124
10.22319/rmcp.v13i3.5776
2448-6698
url https://hdl.handle.net/10495/31943
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.ispartofjournalabbrev.spa.fl_str_mv Rev. Mex. de Cienc. Pecuarias
dc.rights.spa.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by-nc-sa/2.5/co/
dc.rights.accessrights.spa.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.creativecommons.spa.fl_str_mv https://creativecommons.org/licenses/by-nc-sa/4.0/
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/2.5/co/
http://purl.org/coar/access_right/c_abf2
https://creativecommons.org/licenses/by-nc-sa/4.0/
dc.format.extent.spa.fl_str_mv 15
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias
dc.publisher.group.spa.fl_str_mv CENTAURO
dc.publisher.place.spa.fl_str_mv Ciudad de México, México
institution Universidad de Antioquia
bitstream.url.fl_str_mv https://bibliotecadigital.udea.edu.co/bitstream/10495/31943/1/CorreaNathalia_2022_PrevalenceMycobacterium-avium-subsp.Paratuberculosis.pdf
https://bibliotecadigital.udea.edu.co/bitstream/10495/31943/2/license_rdf
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bitstream.checksum.fl_str_mv 746c9517d26f68150e3b979259fbb397
e2060682c9c70d4d30c83c51448f4eed
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bitstream.checksumAlgorithm.fl_str_mv MD5
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repository.name.fl_str_mv Repositorio Institucional Universidad de Antioquia
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spelling Correa Valencia, Nathalia María del PilarRamírez Vásquez, Nicolás FernandoFernández Silva, Jorge Arturo2022-11-10T17:19:06Z2022-11-10T17:19:06Z20222007-1124https://hdl.handle.net/10495/3194310.22319/rmcp.v13i3.57762448-6698ABSTRACT: The present study aimed to determine Mycobacterium avium subsp. paratuberculosis (MAP) prevalence according to environmental samples and to explore the herd-level risk factors associated to MAP infection in dairy herds under mechanical milking parlor and pasture grazing-based systems. The study herds (n= 94) were located in 60 districts from five municipalities in the Northern region of the province of Antioquia, Colombia. Herds were visited once in 2016 to collect two composite environmental samples and to complete a risk assessment questionnaire. MAP identification was carried out using a quantitative real-time PCR method based on the IS900 sequence. A herd was considered as MAP-positive if one or both of the environmental samples were found positive by the molecular technique. The information on risk factors was analyzed using a multivariable logistic regression model. The apparent herd-level prevalence found was 14.9 % (14/94; 95 % CI: 7.7-22.1), ranging from 0 to 33.3 % at municipality-level. Herds where other than Pure-Holstein breeds were predominant (i.e. Jersey, Jersey crossbreeds) were more likely to be MAP-qPCR positively infected than those on which where pure-Holstein cattle was predominant (OR=3.7; 95 % CI: 1.1-15.2). The present study reports MAP prevalence in dairy herds in the province of Antioquia (Colombia), and the association between MAP environmental positivity with the predominant breed in the herd.COL000126215application/pdfengInstituto Nacional de Investigaciones Forestales, Agrícolas y PecuariasCENTAUROCiudad de México, Méxicoinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARTArtículo de investigaciónhttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/2.5/co/http://purl.org/coar/access_right/c_abf2https://creativecommons.org/licenses/by-nc-sa/4.0/Prevalence of Mycobacterium avium subsp. paratuberculosis and associated risk factors in dairies under mechanical milking parlor- systems in Antioquia, ColombiaGanado Holstein - FriesianHolstein - Friesian CattleMycobacterium avium subsp. paratuberculosisParatuberculosisGanado Jerseyhttp://aims.fao.org/aos/agrovoc/c_37851http://aims.fao.org/aos/agrovoc/c_16452Rev. Mex. de Cienc. PecuariasRevista Mexicana de Ciencias Pecuarias643657133ORIGINALCorreaNathalia_2022_PrevalenceMycobacterium-avium-subsp.Paratuberculosis.pdfCorreaNathalia_2022_PrevalenceMycobacterium-avium-subsp.Paratuberculosis.pdfArtículo de investigaciónapplication/pdf502690https://bibliotecadigital.udea.edu.co/bitstream/10495/31943/1/CorreaNathalia_2022_PrevalenceMycobacterium-avium-subsp.Paratuberculosis.pdf746c9517d26f68150e3b979259fbb397MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-81051https://bibliotecadigital.udea.edu.co/bitstream/10495/31943/2/license_rdfe2060682c9c70d4d30c83c51448f4eedMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://bibliotecadigital.udea.edu.co/bitstream/10495/31943/3/license.txt8a4605be74aa9ea9d79846c1fba20a33MD5310495/31943oai:bibliotecadigital.udea.edu.co:10495/319432022-11-10 12:19:07.483Repositorio Institucional Universidad de Antioquiaandres.perez@udea.edu.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