Analysis of genetic diversity in Colombian buffalo herds
ABSTRACT: Estimates of genetic diversity provide useful information on the genetic structure of animal populations, useful for the design of improvement strategies to impact traits of economic interest. They can also be used for implementing conservation and restoration policies regarding the sustai...
- Autores:
-
Ángel Marín, Paula Andrea
Cardona Cadavid, Henry
Moreno Ochoa, Manuel Antonio
Cerón Muñoz, Mario Fernando
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2010
- Institución:
- Universidad de Antioquia
- Repositorio:
- Repositorio UdeA
- Idioma:
- eng
- OAI Identifier:
- oai:bibliotecadigital.udea.edu.co:10495/8432
- Acceso en línea:
- http://hdl.handle.net/10495/8432
- Palabra clave:
- Genetic structure
Microsatellites
Paternity test
- Rights
- openAccess
- License
- Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO)
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| dc.title.spa.fl_str_mv |
Analysis of genetic diversity in Colombian buffalo herds |
| dc.title.alternative.spa.fl_str_mv |
Análisis de la diversidad genética del búfalo en Colombia |
| title |
Analysis of genetic diversity in Colombian buffalo herds |
| spellingShingle |
Analysis of genetic diversity in Colombian buffalo herds Genetic structure Microsatellites Paternity test |
| title_short |
Analysis of genetic diversity in Colombian buffalo herds |
| title_full |
Analysis of genetic diversity in Colombian buffalo herds |
| title_fullStr |
Analysis of genetic diversity in Colombian buffalo herds |
| title_full_unstemmed |
Analysis of genetic diversity in Colombian buffalo herds |
| title_sort |
Analysis of genetic diversity in Colombian buffalo herds |
| dc.creator.fl_str_mv |
Ángel Marín, Paula Andrea Cardona Cadavid, Henry Moreno Ochoa, Manuel Antonio Cerón Muñoz, Mario Fernando |
| dc.contributor.author.none.fl_str_mv |
Ángel Marín, Paula Andrea Cardona Cadavid, Henry Moreno Ochoa, Manuel Antonio Cerón Muñoz, Mario Fernando |
| dc.subject.none.fl_str_mv |
Genetic structure Microsatellites Paternity test |
| topic |
Genetic structure Microsatellites Paternity test |
| description |
ABSTRACT: Estimates of genetic diversity provide useful information on the genetic structure of animal populations, useful for the design of improvement strategies to impact traits of economic interest. They can also be used for implementing conservation and restoration policies regarding the sustainable use of genetic resources. The aim of this study was to characterize the genetic structure of buffalo population (Bubalus bubalis) in the most representative Colombian provinces by using 10 microsatellite markers. A total of 588 individuals were sampled from 12 buffalo herds. The MGTG7 and ETH225 microsatellites were monomorphic. Eighty seven alleles were observed for all the loci. The average number of alleles was 10.9 ± 3.6 and the effective average number of alleles was 3.9 ± 1.4. The PIC values ranged between 0.5 and 0.8, and the probability of exclusion over all loci was over 99.99%. The highest value for the Ho population was 0.68, and the lowest was 0.60. The GST value for the total loci was 0.062, indicating a very low level of genetic structure among subpopulations. Values for genetic distance between populations and racial groups were very low, suggesting there is still a genetic mix within buffalo herds in the analyzed population. |
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2010 |
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2010 |
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2017-10-03T22:08:23Z |
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2017-10-03T22:08:23Z |
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info:eu-repo/semantics/article |
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http://purl.org/coar/version/c_970fb48d4fbd8a85 |
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Artículo de investigación |
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Ángel Marín PA, Cardona Cadavid H, Moreno Ochoa M, Cerón Muñoz MF. Analysis of genetic diversity in Colombian buffalo herds. Rev. Colomb. Cienc. Pecu.. 2010; 23(4): 411-421 |
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0120-0690 |
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http://hdl.handle.net/10495/8432 |
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2256-2958 |
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Ángel Marín PA, Cardona Cadavid H, Moreno Ochoa M, Cerón Muñoz MF. Analysis of genetic diversity in Colombian buffalo herds. Rev. Colomb. Cienc. Pecu.. 2010; 23(4): 411-421 0120-0690 2256-2958 |
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http://hdl.handle.net/10495/8432 |
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eng |
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eng |
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Rev. Colomb. Cienc. Pecu. |
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Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO) |
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info:eu-repo/semantics/openAccess |
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Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO) https://creativecommons.org/licenses/by-nc-sa/2.5/co/ http://purl.org/coar/access_right/c_abf2 https://creativecommons.org/licenses/by-nc-sa/4.0/ |
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Universidad de Antioquia, Facultad de Ciencias Agrarias |
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Grupo de Investigación en Agrociencias, Biodiversidad y Territorio GAMMA |
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Medellín, Colombia |
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Universidad de Antioquia |
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Ángel Marín, Paula AndreaCardona Cadavid, HenryMoreno Ochoa, Manuel AntonioCerón Muñoz, Mario Fernando2017-10-03T22:08:23Z2017-10-03T22:08:23Z2010Ángel Marín PA, Cardona Cadavid H, Moreno Ochoa M, Cerón Muñoz MF. Analysis of genetic diversity in Colombian buffalo herds. Rev. Colomb. Cienc. Pecu.. 2010; 23(4): 411-4210120-0690http://hdl.handle.net/10495/84322256-2958ABSTRACT: Estimates of genetic diversity provide useful information on the genetic structure of animal populations, useful for the design of improvement strategies to impact traits of economic interest. They can also be used for implementing conservation and restoration policies regarding the sustainable use of genetic resources. The aim of this study was to characterize the genetic structure of buffalo population (Bubalus bubalis) in the most representative Colombian provinces by using 10 microsatellite markers. A total of 588 individuals were sampled from 12 buffalo herds. The MGTG7 and ETH225 microsatellites were monomorphic. Eighty seven alleles were observed for all the loci. The average number of alleles was 10.9 ± 3.6 and the effective average number of alleles was 3.9 ± 1.4. The PIC values ranged between 0.5 and 0.8, and the probability of exclusion over all loci was over 99.99%. The highest value for the Ho population was 0.68, and the lowest was 0.60. The GST value for the total loci was 0.062, indicating a very low level of genetic structure among subpopulations. Values for genetic distance between populations and racial groups were very low, suggesting there is still a genetic mix within buffalo herds in the analyzed population.RESUMEN: Las estimaciones de diversidad genética del búfalo en Colombia proveen información útil para conocer su estructura genética, diseñar programas de cría y mejoramiento genético para características de interés económico, e implementar políticas de conservación para la utilización sostenible y restauración de los recursos genéticos. El objetivo de este estudio fue caracterizar y determinar la estructura genética de la población bufalina (Bubalus bubalis) en las provincias (Departamentos) Colombianos más representativos, por medio de 10 marcadores microsatélites. Se muestrearon 588 individuos de 12 hatos bufalinos de Colombia. Los microsatélites ETH225 y MGTG7 fueron monomórficos. Se observó un total de 87 alelos para el total de los loci, el número de alelos observados promedio fue de 10.9 ± 3.6 y el número efectivo de alelos promedio fue de 3.9 ± 1.4. Los valores de PIC variaron entre 0.5 y 0.8, y la probabilidad de exclusión sobre todos los loci fue superior al 99.99%. El valor más alto de Ho por población fue de 0.68 y el más bajo 0.60. El valor promedio de GST para el total de los loci en la población total de búfalos fue de 0.062, indicando un grado muy bajo de estructura genética entre las subpoblaciones. Los valores de distancia genética fueron muy bajos entre poblaciones y entre grupos raciales, lo cual indica que aún existe una alta mezcla genética en los hatos bufalinos en Colombia.COL0006779application/pdfengUniversidad de Antioquia, Facultad de Ciencias AgrariasGrupo de Investigación en Agrociencias, Biodiversidad y Territorio GAMMAMedellín, Colombiainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARTArtículo de investigaciónhttp://purl.org/coar/version/c_970fb48d4fbd8a85Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO)info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/co/http://purl.org/coar/access_right/c_abf2https://creativecommons.org/licenses/by-nc-sa/4.0/Genetic structureMicrosatellitesPaternity testAnalysis of genetic diversity in Colombian buffalo herdsAnálisis de la diversidad genética del búfalo en ColombiaRev. Colomb. Cienc. Pecu.Revista Colombiana de Ciencias Pecuarias411421234ORIGINALCeronMario_2010_AnalysiGeneticDiversity.pdfCeronMario_2010_AnalysiGeneticDiversity.pdfArtículo de investigaciónapplication/pdf422199http://bibliotecadigital.udea.edu.co/bitstream/10495/8432/1/CeronMario_2010_AnalysiGeneticDiversity.pdfdaa7850fa262df56e30d78ff68c1d7dfMD51CC-LICENSElicense_urllicense_urltext/plain; charset=utf-849http://bibliotecadigital.udea.edu.co/bitstream/10495/8432/2/license_url4afdbb8c545fd630ea7db775da747b2fMD52license_textlicense_texttext/html; charset=utf-80http://bibliotecadigital.udea.edu.co/bitstream/10495/8432/3/license_textd41d8cd98f00b204e9800998ecf8427eMD53license_rdflicense_rdfapplication/rdf+xml; charset=utf-80http://bibliotecadigital.udea.edu.co/bitstream/10495/8432/4/license_rdfd41d8cd98f00b204e9800998ecf8427eMD54LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://bibliotecadigital.udea.edu.co/bitstream/10495/8432/5/license.txt8a4605be74aa9ea9d79846c1fba20a33MD5510495/8432oai:bibliotecadigital.udea.edu.co:10495/84322021-05-21 20:29:09.246Repositorio Institucional Universidad de Antioquiaandres.perez@udea.edu.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 |