Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene
ABSTRACT : The suitability of a PCR procedure using a pair of primers targeting the hilA gene was evaluated as a means of detecting Salmonella species. A total of 33 Salmonella strains from 27 serovars and 15 non-Salmonella strains from eight different genera were included. PCR with all the Salmonel...
- Autores:
-
Pathmanathan, Siva Gowri
Cardona Castro, Nora María
Sánchez Jiménez, Miryan Margot
Correa Ochoa, Margarita María
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2003
- Institución:
- Universidad de Antioquia
- Repositorio:
- Repositorio UdeA
- Idioma:
- eng
- OAI Identifier:
- oai:bibliotecadigital.udea.edu.co:10495/26543
- Acceso en línea:
- http://hdl.handle.net/10495/26543
- Palabra clave:
- Proteínas Bacterianas
Bacterial Proteins
Salmonella
Salmonella typhimurium
Sensibilidad y Especificidad
Sensitivity and Specificity
Reacción en Cadena de la Polimerasa
Polymerase Chain Reaction
- Rights
- openAccess
- License
- http://creativecommons.org/licenses/by/2.5/co/
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oai:bibliotecadigital.udea.edu.co:10495/26543 |
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UDEA2 |
network_name_str |
Repositorio UdeA |
repository_id_str |
|
dc.title.spa.fl_str_mv |
Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene |
title |
Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene |
spellingShingle |
Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene Proteínas Bacterianas Bacterial Proteins Salmonella Salmonella typhimurium Sensibilidad y Especificidad Sensitivity and Specificity Reacción en Cadena de la Polimerasa Polymerase Chain Reaction |
title_short |
Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene |
title_full |
Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene |
title_fullStr |
Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene |
title_full_unstemmed |
Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene |
title_sort |
Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene |
dc.creator.fl_str_mv |
Pathmanathan, Siva Gowri Cardona Castro, Nora María Sánchez Jiménez, Miryan Margot Correa Ochoa, Margarita María |
dc.contributor.author.none.fl_str_mv |
Pathmanathan, Siva Gowri Cardona Castro, Nora María Sánchez Jiménez, Miryan Margot Correa Ochoa, Margarita María |
dc.subject.decs.none.fl_str_mv |
Proteínas Bacterianas Bacterial Proteins Salmonella Salmonella typhimurium Sensibilidad y Especificidad Sensitivity and Specificity Reacción en Cadena de la Polimerasa Polymerase Chain Reaction |
topic |
Proteínas Bacterianas Bacterial Proteins Salmonella Salmonella typhimurium Sensibilidad y Especificidad Sensitivity and Specificity Reacción en Cadena de la Polimerasa Polymerase Chain Reaction |
description |
ABSTRACT : The suitability of a PCR procedure using a pair of primers targeting the hilA gene was evaluated as a means of detecting Salmonella species. A total of 33 Salmonella strains from 27 serovars and 15 non-Salmonella strains from eight different genera were included. PCR with all the Salmonella strains produced a 784 bp DNA fragment that was absent from all the non-Salmonella strains tested. The detection limit of the PCR was 100 pg with genomic DNA and 3 3 104 c.f.u. ml 1 with serial dilutions of bacterial culture. An enrichment-PCR method was further developed to test the sensitivity of the hilA primers for the detection of Salmonella in faecal samples spiked with different concentrations of Salmonella choleraesuis subsp. choleraesuis serovar Typhimurium. The method described allowed the detection of Salmonella Typhimurium in faecal samples at a concentration of 3 3 102 c.f.u. ml 1. In conclusion, the hilA primers are specific for Salmonella species and the PCR method presented may be suitable for the detection of Salmonella in faeces. |
publishDate |
2003 |
dc.date.issued.none.fl_str_mv |
2003 |
dc.date.accessioned.none.fl_str_mv |
2022-03-12T18:10:56Z |
dc.date.available.none.fl_str_mv |
2022-03-12T18:10:56Z |
dc.type.spa.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.hasversion.spa.fl_str_mv |
info:eu-repo/semantics/acceptedVersion |
dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_2df8fbb1 |
dc.type.redcol.spa.fl_str_mv |
https://purl.org/redcol/resource_type/ART |
dc.type.local.spa.fl_str_mv |
Artículo de investigación |
format |
http://purl.org/coar/resource_type/c_2df8fbb1 |
status_str |
acceptedVersion |
dc.identifier.citation.spa.fl_str_mv |
Pathmanathan SG, Cardona-Castro N, Sánchez-Jiménez MM, Correa-Ochoa MM, Puthucheary SD, Thong KL. Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene. J Med Microbiol. 2003 Sep;52(Pt 9):773-776. doi: 10.1099/jmm.0.05188-0. |
dc.identifier.issn.none.fl_str_mv |
0022-2615 |
dc.identifier.uri.none.fl_str_mv |
http://hdl.handle.net/10495/26543 |
dc.identifier.doi.none.fl_str_mv |
10.1099/jmm.0.05188-0 |
dc.identifier.eissn.none.fl_str_mv |
1473-5644 |
identifier_str_mv |
Pathmanathan SG, Cardona-Castro N, Sánchez-Jiménez MM, Correa-Ochoa MM, Puthucheary SD, Thong KL. Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene. J Med Microbiol. 2003 Sep;52(Pt 9):773-776. doi: 10.1099/jmm.0.05188-0. 0022-2615 10.1099/jmm.0.05188-0 1473-5644 |
url |
http://hdl.handle.net/10495/26543 |
dc.language.iso.spa.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartofjournalabbrev.spa.fl_str_mv |
J. Med. Microbiol. |
dc.rights.spa.fl_str_mv |
info:eu-repo/semantics/openAccess |
dc.rights.uri.*.fl_str_mv |
http://creativecommons.org/licenses/by/2.5/co/ |
dc.rights.accessrights.spa.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
dc.rights.creativecommons.spa.fl_str_mv |
https://creativecommons.org/licenses/by-nc-nd/4.0/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
http://creativecommons.org/licenses/by/2.5/co/ http://purl.org/coar/access_right/c_abf2 https://creativecommons.org/licenses/by-nc-nd/4.0/ |
dc.format.extent.spa.fl_str_mv |
4 |
dc.format.mimetype.spa.fl_str_mv |
application/pdf |
dc.publisher.spa.fl_str_mv |
Microbiology Society |
dc.publisher.group.spa.fl_str_mv |
Microbiología Molecular |
dc.publisher.place.spa.fl_str_mv |
Londres, Inglaterra |
institution |
Universidad de Antioquia |
bitstream.url.fl_str_mv |
http://bibliotecadigital.udea.edu.co/bitstream/10495/26543/1/CorreaMargarita_2003__DetectionSalmonellaPCR.pdf http://bibliotecadigital.udea.edu.co/bitstream/10495/26543/2/license_rdf http://bibliotecadigital.udea.edu.co/bitstream/10495/26543/3/license.txt |
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bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 |
repository.name.fl_str_mv |
Repositorio Institucional Universidad de Antioquia |
repository.mail.fl_str_mv |
andres.perez@udea.edu.co |
_version_ |
1812173203315884032 |
spelling |
Pathmanathan, Siva GowriCardona Castro, Nora MaríaSánchez Jiménez, Miryan MargotCorrea Ochoa, Margarita María2022-03-12T18:10:56Z2022-03-12T18:10:56Z2003Pathmanathan SG, Cardona-Castro N, Sánchez-Jiménez MM, Correa-Ochoa MM, Puthucheary SD, Thong KL. Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene. J Med Microbiol. 2003 Sep;52(Pt 9):773-776. doi: 10.1099/jmm.0.05188-0.0022-2615http://hdl.handle.net/10495/2654310.1099/jmm.0.05188-01473-5644ABSTRACT : The suitability of a PCR procedure using a pair of primers targeting the hilA gene was evaluated as a means of detecting Salmonella species. A total of 33 Salmonella strains from 27 serovars and 15 non-Salmonella strains from eight different genera were included. PCR with all the Salmonella strains produced a 784 bp DNA fragment that was absent from all the non-Salmonella strains tested. The detection limit of the PCR was 100 pg with genomic DNA and 3 3 104 c.f.u. ml 1 with serial dilutions of bacterial culture. An enrichment-PCR method was further developed to test the sensitivity of the hilA primers for the detection of Salmonella in faecal samples spiked with different concentrations of Salmonella choleraesuis subsp. choleraesuis serovar Typhimurium. The method described allowed the detection of Salmonella Typhimurium in faecal samples at a concentration of 3 3 102 c.f.u. ml 1. In conclusion, the hilA primers are specific for Salmonella species and the PCR method presented may be suitable for the detection of Salmonella in faeces.COL00137464application/pdfengMicrobiology SocietyMicrobiología MolecularLondres, Inglaterrainfo:eu-repo/semantics/acceptedVersioninfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARTArtículo de investigacióninfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by/2.5/co/http://purl.org/coar/access_right/c_abf2https://creativecommons.org/licenses/by-nc-nd/4.0/Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA geneProteínas BacterianasBacterial ProteinsSalmonellaSalmonella typhimuriumSensibilidad y EspecificidadSensitivity and SpecificityReacción en Cadena de la PolimerasaPolymerase Chain ReactionJ. Med. Microbiol.Journal of Medical Microbiology77377652Pt 9ORIGINALCorreaMargarita_2003__DetectionSalmonellaPCR.pdfCorreaMargarita_2003__DetectionSalmonellaPCR.pdfArtículo de investigaciónapplication/pdf97623http://bibliotecadigital.udea.edu.co/bitstream/10495/26543/1/CorreaMargarita_2003__DetectionSalmonellaPCR.pdfb4fb7a376827c8a20aa0160621add163MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8927http://bibliotecadigital.udea.edu.co/bitstream/10495/26543/2/license_rdf1646d1f6b96dbbbc38035efc9239ac9cMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://bibliotecadigital.udea.edu.co/bitstream/10495/26543/3/license.txt8a4605be74aa9ea9d79846c1fba20a33MD5310495/26543oai:bibliotecadigital.udea.edu.co:10495/265432022-04-22 10:24:07.301Repositorio Institucional Universidad de Antioquiaandres.perez@udea.edu.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 |