Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene

ABSTRACT : The suitability of a PCR procedure using a pair of primers targeting the hilA gene was evaluated as a means of detecting Salmonella species. A total of 33 Salmonella strains from 27 serovars and 15 non-Salmonella strains from eight different genera were included. PCR with all the Salmonel...

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Autores:
Pathmanathan, Siva Gowri
Cardona Castro, Nora María
Sánchez Jiménez, Miryan Margot
Correa Ochoa, Margarita María
Tipo de recurso:
Article of investigation
Fecha de publicación:
2003
Institución:
Universidad de Antioquia
Repositorio:
Repositorio UdeA
Idioma:
eng
OAI Identifier:
oai:bibliotecadigital.udea.edu.co:10495/26543
Acceso en línea:
http://hdl.handle.net/10495/26543
Palabra clave:
Proteínas Bacterianas
Bacterial Proteins
Salmonella
Salmonella typhimurium
Sensibilidad y Especificidad
Sensitivity and Specificity
Reacción en Cadena de la Polimerasa
Polymerase Chain Reaction
Rights
openAccess
License
http://creativecommons.org/licenses/by/2.5/co/
id UDEA2_de300e631f86bffa2ceca305f398be12
oai_identifier_str oai:bibliotecadigital.udea.edu.co:10495/26543
network_acronym_str UDEA2
network_name_str Repositorio UdeA
repository_id_str
dc.title.spa.fl_str_mv Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene
title Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene
spellingShingle Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene
Proteínas Bacterianas
Bacterial Proteins
Salmonella
Salmonella typhimurium
Sensibilidad y Especificidad
Sensitivity and Specificity
Reacción en Cadena de la Polimerasa
Polymerase Chain Reaction
title_short Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene
title_full Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene
title_fullStr Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene
title_full_unstemmed Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene
title_sort Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene
dc.creator.fl_str_mv Pathmanathan, Siva Gowri
Cardona Castro, Nora María
Sánchez Jiménez, Miryan Margot
Correa Ochoa, Margarita María
dc.contributor.author.none.fl_str_mv Pathmanathan, Siva Gowri
Cardona Castro, Nora María
Sánchez Jiménez, Miryan Margot
Correa Ochoa, Margarita María
dc.subject.decs.none.fl_str_mv Proteínas Bacterianas
Bacterial Proteins
Salmonella
Salmonella typhimurium
Sensibilidad y Especificidad
Sensitivity and Specificity
Reacción en Cadena de la Polimerasa
Polymerase Chain Reaction
topic Proteínas Bacterianas
Bacterial Proteins
Salmonella
Salmonella typhimurium
Sensibilidad y Especificidad
Sensitivity and Specificity
Reacción en Cadena de la Polimerasa
Polymerase Chain Reaction
description ABSTRACT : The suitability of a PCR procedure using a pair of primers targeting the hilA gene was evaluated as a means of detecting Salmonella species. A total of 33 Salmonella strains from 27 serovars and 15 non-Salmonella strains from eight different genera were included. PCR with all the Salmonella strains produced a 784 bp DNA fragment that was absent from all the non-Salmonella strains tested. The detection limit of the PCR was 100 pg with genomic DNA and 3 3 104 c.f.u. ml 1 with serial dilutions of bacterial culture. An enrichment-PCR method was further developed to test the sensitivity of the hilA primers for the detection of Salmonella in faecal samples spiked with different concentrations of Salmonella choleraesuis subsp. choleraesuis serovar Typhimurium. The method described allowed the detection of Salmonella Typhimurium in faecal samples at a concentration of 3 3 102 c.f.u. ml 1. In conclusion, the hilA primers are specific for Salmonella species and the PCR method presented may be suitable for the detection of Salmonella in faeces.
publishDate 2003
dc.date.issued.none.fl_str_mv 2003
dc.date.accessioned.none.fl_str_mv 2022-03-12T18:10:56Z
dc.date.available.none.fl_str_mv 2022-03-12T18:10:56Z
dc.type.spa.fl_str_mv info:eu-repo/semantics/article
dc.type.hasversion.spa.fl_str_mv info:eu-repo/semantics/acceptedVersion
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dc.type.local.spa.fl_str_mv Artículo de investigación
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dc.identifier.citation.spa.fl_str_mv Pathmanathan SG, Cardona-Castro N, Sánchez-Jiménez MM, Correa-Ochoa MM, Puthucheary SD, Thong KL. Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene. J Med Microbiol. 2003 Sep;52(Pt 9):773-776. doi: 10.1099/jmm.0.05188-0.
dc.identifier.issn.none.fl_str_mv 0022-2615
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/10495/26543
dc.identifier.doi.none.fl_str_mv 10.1099/jmm.0.05188-0
dc.identifier.eissn.none.fl_str_mv 1473-5644
identifier_str_mv Pathmanathan SG, Cardona-Castro N, Sánchez-Jiménez MM, Correa-Ochoa MM, Puthucheary SD, Thong KL. Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene. J Med Microbiol. 2003 Sep;52(Pt 9):773-776. doi: 10.1099/jmm.0.05188-0.
0022-2615
10.1099/jmm.0.05188-0
1473-5644
url http://hdl.handle.net/10495/26543
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.ispartofjournalabbrev.spa.fl_str_mv J. Med. Microbiol.
dc.rights.spa.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by/2.5/co/
dc.rights.accessrights.spa.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.creativecommons.spa.fl_str_mv https://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by/2.5/co/
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dc.publisher.spa.fl_str_mv Microbiology Society
dc.publisher.group.spa.fl_str_mv Microbiología Molecular
dc.publisher.place.spa.fl_str_mv Londres, Inglaterra
institution Universidad de Antioquia
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spelling Pathmanathan, Siva GowriCardona Castro, Nora MaríaSánchez Jiménez, Miryan MargotCorrea Ochoa, Margarita María2022-03-12T18:10:56Z2022-03-12T18:10:56Z2003Pathmanathan SG, Cardona-Castro N, Sánchez-Jiménez MM, Correa-Ochoa MM, Puthucheary SD, Thong KL. Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene. J Med Microbiol. 2003 Sep;52(Pt 9):773-776. doi: 10.1099/jmm.0.05188-0.0022-2615http://hdl.handle.net/10495/2654310.1099/jmm.0.05188-01473-5644ABSTRACT : The suitability of a PCR procedure using a pair of primers targeting the hilA gene was evaluated as a means of detecting Salmonella species. A total of 33 Salmonella strains from 27 serovars and 15 non-Salmonella strains from eight different genera were included. PCR with all the Salmonella strains produced a 784 bp DNA fragment that was absent from all the non-Salmonella strains tested. The detection limit of the PCR was 100 pg with genomic DNA and 3 3 104 c.f.u. ml 1 with serial dilutions of bacterial culture. An enrichment-PCR method was further developed to test the sensitivity of the hilA primers for the detection of Salmonella in faecal samples spiked with different concentrations of Salmonella choleraesuis subsp. choleraesuis serovar Typhimurium. The method described allowed the detection of Salmonella Typhimurium in faecal samples at a concentration of 3 3 102 c.f.u. ml 1. In conclusion, the hilA primers are specific for Salmonella species and the PCR method presented may be suitable for the detection of Salmonella in faeces.COL00137464application/pdfengMicrobiology SocietyMicrobiología MolecularLondres, Inglaterrainfo:eu-repo/semantics/acceptedVersioninfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARTArtículo de investigacióninfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by/2.5/co/http://purl.org/coar/access_right/c_abf2https://creativecommons.org/licenses/by-nc-nd/4.0/Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA geneProteínas BacterianasBacterial ProteinsSalmonellaSalmonella typhimuriumSensibilidad y EspecificidadSensitivity and SpecificityReacción en Cadena de la PolimerasaPolymerase Chain ReactionJ. Med. Microbiol.Journal of Medical Microbiology77377652Pt 9ORIGINALCorreaMargarita_2003__DetectionSalmonellaPCR.pdfCorreaMargarita_2003__DetectionSalmonellaPCR.pdfArtículo de investigaciónapplication/pdf97623http://bibliotecadigital.udea.edu.co/bitstream/10495/26543/1/CorreaMargarita_2003__DetectionSalmonellaPCR.pdfb4fb7a376827c8a20aa0160621add163MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8927http://bibliotecadigital.udea.edu.co/bitstream/10495/26543/2/license_rdf1646d1f6b96dbbbc38035efc9239ac9cMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://bibliotecadigital.udea.edu.co/bitstream/10495/26543/3/license.txt8a4605be74aa9ea9d79846c1fba20a33MD5310495/26543oai:bibliotecadigital.udea.edu.co:10495/265432022-04-22 10:24:07.301Repositorio Institucional Universidad de Antioquiaandres.perez@udea.edu.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