Extinction risk or lack of sampling in an endangered species : genetic structure and environmental suitability of the neotropical frog Pristimantis penelopus (Anura: Craugastoridae)

ABSTRACT: IUCN Red Lists have been a valuable tool to prioritize conservation plans in endemic neo-tropical frogs. However, many areas in this region are poorly known in terms of their diversity and endemism. Based on examined museum specimens of the threatened species Pristimantis penelopus we revi...

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Autores:: Restrepo Isaza, Adriana
Daza Rojas, Juan Manuel
Velasco Vinasco, Julián Andrés

Tipo de recurso:: Article of investigation

Fecha de publicación:: 2017

Institución:: Universidad de Antioquia

Repositorio:: Repositorio UdeA

Idioma:: eng

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dc.title.spa.fl_str_mv	Extinction risk or lack of sampling in an endangered species : genetic structure and environmental suitability of the neotropical frog Pristimantis penelopus (Anura: Craugastoridae)
dc.title.alternative.spa.fl_str_mv	Riesgo de extinción o falta de muestreo en una especie amenazada : estructura genética y adecuación ambiental de la rana neotropical Pristimantis penelopus (Anura: Craugastoridae)
title	Extinction risk or lack of sampling in an endangered species : genetic structure and environmental suitability of the neotropical frog Pristimantis penelopus (Anura: Craugastoridae)
spellingShingle	Extinction risk or lack of sampling in an endangered species : genetic structure and environmental suitability of the neotropical frog Pristimantis penelopus (Anura: Craugastoridae) Colombia Filogeografía Phylogeography Anuros Anura Nicho (ecología) Niche (Ecology) Lista Roja de la UICN IUCN Red List Terrarana
title_short	Extinction risk or lack of sampling in an endangered species : genetic structure and environmental suitability of the neotropical frog Pristimantis penelopus (Anura: Craugastoridae)
title_full	Extinction risk or lack of sampling in an endangered species : genetic structure and environmental suitability of the neotropical frog Pristimantis penelopus (Anura: Craugastoridae)
title_fullStr	Extinction risk or lack of sampling in an endangered species : genetic structure and environmental suitability of the neotropical frog Pristimantis penelopus (Anura: Craugastoridae)
title_full_unstemmed	Extinction risk or lack of sampling in an endangered species : genetic structure and environmental suitability of the neotropical frog Pristimantis penelopus (Anura: Craugastoridae)
title_sort	Extinction risk or lack of sampling in an endangered species : genetic structure and environmental suitability of the neotropical frog Pristimantis penelopus (Anura: Craugastoridae)
dc.creator.fl_str_mv	Restrepo Isaza, Adriana Daza Rojas, Juan Manuel Velasco Vinasco, Julián Andrés
dc.contributor.author.none.fl_str_mv	Restrepo Isaza, Adriana Daza Rojas, Juan Manuel Velasco Vinasco, Julián Andrés
dc.subject.decs.none.fl_str_mv	Colombia Filogeografía Phylogeography
topic	Colombia Filogeografía Phylogeography Anuros Anura Nicho (ecología) Niche (Ecology) Lista Roja de la UICN IUCN Red List Terrarana
dc.subject.lemb.none.fl_str_mv	Anuros Anura Nicho (ecología) Niche (Ecology)
dc.subject.proposal.spa.fl_str_mv	Lista Roja de la UICN IUCN Red List Terrarana
description	ABSTRACT: IUCN Red Lists have been a valuable tool to prioritize conservation plans in endemic neo-tropical frogs. However, many areas in this region are poorly known in terms of their diversity and endemism. Based on examined museum specimens of the threatened species Pristimantis penelopus we revised its geographic distribution and determined the habitat suitability using niche modeling techniques. Using a mitochondrial fragment of COI gene, we determine the phylogenetic position and the extent of the genetic variation across its distribution in Colombia. We present the first records of P. penelopus for the Cordillera Oriental, the western versant of Cordillera Occidental and the northern portion of the Cauca river basin. Based on the molecu-lar phylogenetic analysis, Pristimantis penelopus belongs to the P. ridens series sensu Padial et al. (2014). The mean of intraspecific genetic variation is 2.1% and the variation among population ranges between 2.3 and 3.5%. The genetic distance between the western popu-lations and the Magdalena Valley populations suggests a potential phylogeographic break in northwestern Antioquia. We expand the realized distribution by 258 kilometers north, 200 km east and 223 km northwest. Based on our results and according to the IUCN criteria we pro-pose a new category for the species and highlight the need to increase the surveys in poorly known regions to better understand the geographic distribution and conservation status of listed species.
publishDate	2017
dc.date.issued.none.fl_str_mv	2017
dc.date.accessioned.none.fl_str_mv	2022-09-30T14:56:03Z
dc.date.available.none.fl_str_mv	2022-09-30T14:56:03Z
dc.type.spa.fl_str_mv	info:eu-repo/semantics/article
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dc.identifier.citation.spa.fl_str_mv	Restrepo, A., Velasco, JA y Daza, JM (2017). Riesgo de extinción o falta de muestreo en una especie amenazada: estructura genética y aptitud ambiental de la rana neotropical Pristimantis penelopus (Anura: Craugastoridae). Papéis Avulsos De Zoologia , 57 (1), 1-15. https://doi.org/10.1590/0031-1049.2017.57.01
dc.identifier.issn.none.fl_str_mv	0031-1049
dc.identifier.uri.none.fl_str_mv	https://hdl.handle.net/10495/30982
dc.identifier.doi.none.fl_str_mv	10.1590/0031-1049.2017.57.01
dc.identifier.eissn.none.fl_str_mv	1807-0205
dc.identifier.url.spa.fl_str_mv	https://www.revistas.usp.br/paz/article/view/128339
identifier_str_mv	Restrepo, A., Velasco, JA y Daza, JM (2017). Riesgo de extinción o falta de muestreo en una especie amenazada: estructura genética y aptitud ambiental de la rana neotropical Pristimantis penelopus (Anura: Craugastoridae). Papéis Avulsos De Zoologia , 57 (1), 1-15. https://doi.org/10.1590/0031-1049.2017.57.01 0031-1049 10.1590/0031-1049.2017.57.01 1807-0205
url	https://hdl.handle.net/10495/30982 https://www.revistas.usp.br/paz/article/view/128339
dc.language.iso.spa.fl_str_mv	eng
language	eng
dc.relation.ispartofjournalabbrev.spa.fl_str_mv	Pap. Avulsos Zool.
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dc.publisher.spa.fl_str_mv	Universidade de São Paulo
dc.publisher.group.spa.fl_str_mv	Grupo Herpetológico de Antioquia
dc.publisher.place.spa.fl_str_mv	São Paulo, Brasil
institution	Universidad de Antioquia
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spelling	Restrepo Isaza, AdrianaDaza Rojas, Juan ManuelVelasco Vinasco, Julián Andrés2022-09-30T14:56:03Z2022-09-30T14:56:03Z2017Restrepo, A., Velasco, JA y Daza, JM (2017). Riesgo de extinción o falta de muestreo en una especie amenazada: estructura genética y aptitud ambiental de la rana neotropical Pristimantis penelopus (Anura: Craugastoridae). Papéis Avulsos De Zoologia , 57 (1), 1-15. https://doi.org/10.1590/0031-1049.2017.57.010031-1049https://hdl.handle.net/10495/3098210.1590/0031-1049.2017.57.011807-0205https://www.revistas.usp.br/paz/article/view/128339ABSTRACT: IUCN Red Lists have been a valuable tool to prioritize conservation plans in endemic neo-tropical frogs. However, many areas in this region are poorly known in terms of their diversity and endemism. Based on examined museum specimens of the threatened species Pristimantis penelopus we revised its geographic distribution and determined the habitat suitability using niche modeling techniques. Using a mitochondrial fragment of COI gene, we determine the phylogenetic position and the extent of the genetic variation across its distribution in Colombia. We present the first records of P. penelopus for the Cordillera Oriental, the western versant of Cordillera Occidental and the northern portion of the Cauca river basin. Based on the molecu-lar phylogenetic analysis, Pristimantis penelopus belongs to the P. ridens series sensu Padial et al. (2014). The mean of intraspecific genetic variation is 2.1% and the variation among population ranges between 2.3 and 3.5%. The genetic distance between the western popu-lations and the Magdalena Valley populations suggests a potential phylogeographic break in northwestern Antioquia. We expand the realized distribution by 258 kilometers north, 200 km east and 223 km northwest. Based on our results and according to the IUCN criteria we pro-pose a new category for the species and highlight the need to increase the surveys in poorly known regions to better understand the geographic distribution and conservation status of listed species.RESUMEN: Las Listas Rojas de la UICN han sido una herramienta valiosa para priorizar planes de conservación en ranas neotropicales endémicas. Sin embargo, muchas áreas de esta región son poco conocidas en términos de su diversidad y endemismo. Sobre la base de especímenes de museo examinados de la especie amenazada Pristimantis penelopus , revisamos su distribución geográfica y determinamos la idoneidad del hábitat utilizando técnicas de modelado de nichos. Utilizando un fragmento mitocondrial del gen COI, determinamos la posición filogenética y el grado de variación genética a lo largo de su distribución en Colombia. Presentamos los primeros registros de P. penelopus para la Cordillera Oriental, la vertiente occidental de la Cordillera Occidental y la porción norte de la cuenca del río Cauca. Con base en el análisis filogenético molecular,Pristimantis penelopus pertenece a la serie P. ridens sensu Padial et al. (2014). La media de variación genética intraespecífica es de 2,1% y la variación entre poblaciones oscila entre 2,3 y 3,5%. La distancia genética entre las poblaciones del occidente y las poblaciones del Valle del Magdalena sugiere un potencial quiebre filogeográfico en el noroeste antioqueño. Ampliamos la distribución realizada en 258 kilómetros al norte, 200 km al este y 223 km al noroeste. Con base en nuestros resultados y de acuerdo con los criterios de la UICN, proponemos una nueva categoría para la especie y destacamos la necesidad de aumentar los estudios en regiones poco conocidas para comprender mejor la distribución geográfica y el estado de conservación de las especies incluidas en la lista.COL000737315application/pdfengUniversidade de São PauloGrupo Herpetológico de AntioquiaSão Paulo, Brasilinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARTArtículo de investigaciónhttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-nd/2.5/co/http://purl.org/coar/access_right/c_abf2https://creativecommons.org/licenses/by-nc-nd/4.0/Extinction risk or lack of sampling in an endangered species : genetic structure and environmental suitability of the neotropical frog Pristimantis penelopus (Anura: Craugastoridae)Riesgo de extinción o falta de muestreo en una especie amenazada : estructura genética y adecuación ambiental de la rana neotropical Pristimantis penelopus (Anura: Craugastoridae)ColombiaFilogeografíaPhylogeographyAnurosAnuraNicho (ecología)Niche (Ecology)Lista Roja de la UICNIUCN Red ListTerraranaPap. Avulsos Zool.Papéis Avulsos de Zoologia115571ORIGINALRestrepoAdriana_2017_ExtinctionRiskLackSampling.pdfRestrepoAdriana_2017_ExtinctionRiskLackSampling.pdfArtículo de investigaciónapplication/pdf2950667https://bibliotecadigital.udea.edu.co/bitstream/10495/30982/1/RestrepoAdriana_2017_ExtinctionRiskLackSampling.pdf7017243c7ba859e911136d3919fb6410MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8823https://bibliotecadigital.udea.edu.co/bitstream/10495/30982/2/license_rdfb88b088d9957e670ce3b3fbe2eedbc13MD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://bibliotecadigital.udea.edu.co/bitstream/10495/30982/3/license.txt8a4605be74aa9ea9d79846c1fba20a33MD5310495/30982oai:bibliotecadigital.udea.edu.co:10495/309822022-09-30 09:56:04.489Repositorio Institucional Universidad de Antioquiaandres.perez@udea.edu.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

Extinction risk or lack of sampling in an endangered species : genetic structure and environmental suitability of the neotropical frog Pristimantis penelopus (Anura: Craugastoridae)

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