Brain-imaging based methodology for OPM sensor placement

ABSTRACT: Optically-pumped magnetometers (OPMs) have reached sensitivity levels that make them viable portable alternatives to traditional superconducting technology for magnetoencephalography. OPMs do not require cryogenic cooling, and can therefore be placed directly on the scalp surface. Unlike c...

Full description

Autores:
Duque Muñoz, Leonardo
Tipo de recurso:
Doctoral thesis
Fecha de publicación:
2019
Institución:
Universidad de Antioquia
Repositorio:
Repositorio UdeA
Idioma:
spa
OAI Identifier:
oai:bibliotecadigital.udea.edu.co:10495/14490
Acceso en línea:
http://hdl.handle.net/10495/14490
Palabra clave:
Brain
Cerebro
Optical instruments
Instrumento óptico
Systems of medicine
Sistema médico
http://vocabularies.unesco.org/thesaurus/concept4292
http://vocabularies.unesco.org/thesaurus/concept3237
http://vocabularies.unesco.org/thesaurus/concept244
Rights
openAccess
License
Atribución-NoComercial-SinDerivadas 2.5 Colombia (CC BY-NC-ND 2.5 CO)
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network_acronym_str UDEA2
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repository_id_str
dc.title.spa.fl_str_mv Brain-imaging based methodology for OPM sensor placement
title Brain-imaging based methodology for OPM sensor placement
spellingShingle Brain-imaging based methodology for OPM sensor placement
Brain
Cerebro
Optical instruments
Instrumento óptico
Systems of medicine
Sistema médico
http://vocabularies.unesco.org/thesaurus/concept4292
http://vocabularies.unesco.org/thesaurus/concept3237
http://vocabularies.unesco.org/thesaurus/concept244
title_short Brain-imaging based methodology for OPM sensor placement
title_full Brain-imaging based methodology for OPM sensor placement
title_fullStr Brain-imaging based methodology for OPM sensor placement
title_full_unstemmed Brain-imaging based methodology for OPM sensor placement
title_sort Brain-imaging based methodology for OPM sensor placement
dc.creator.fl_str_mv Duque Muñoz, Leonardo
dc.contributor.advisor.none.fl_str_mv Lopez Hincapie, Jose David
Vargas Bonilla, Jesus Francisco
dc.contributor.author.none.fl_str_mv Duque Muñoz, Leonardo
dc.subject.unesco.none.fl_str_mv Brain
Cerebro
Optical instruments
Instrumento óptico
Systems of medicine
Sistema médico
topic Brain
Cerebro
Optical instruments
Instrumento óptico
Systems of medicine
Sistema médico
http://vocabularies.unesco.org/thesaurus/concept4292
http://vocabularies.unesco.org/thesaurus/concept3237
http://vocabularies.unesco.org/thesaurus/concept244
dc.subject.unescouri.none.fl_str_mv http://vocabularies.unesco.org/thesaurus/concept4292
http://vocabularies.unesco.org/thesaurus/concept3237
http://vocabularies.unesco.org/thesaurus/concept244
description ABSTRACT: Optically-pumped magnetometers (OPMs) have reached sensitivity levels that make them viable portable alternatives to traditional superconducting technology for magnetoencephalography. OPMs do not require cryogenic cooling, and can therefore be placed directly on the scalp surface. Unlike cryogenic systems based on a well characterised xed arrays essentially linear in applied ux, or electroencephalography sensors that do not need to account for sensors orientation; OPM sensors are no longer rigidly arranged with a scanner system. Therefore, uncertainty in their locations and orientations with respect to the brain, and with respect to one another, must be accounted for. In this thesis dissertation, we propose a methodology to estimate the true sensor geometry of a disturbed array. We use parametric Bayesian inversion methods to perform neural source reconstruction and score among disturbed geometries with Free Energy as a cost function. This geometry disturbance is non-linear, causing local sub-optimal values on Free Energy that we tackle with a Metropolis search. Looking for a robust solution to this sensor placement problem, we develop a Multiple Kernel Learning (MKL) approach to extract the predominant complex dynamics hidden in the data. To do this, a weighted mixture of Gaussian kernels is used to highlight the data relationships, enhancing the data-driven covariance estimation and leading to a more reliable neural source reconstruction. When tested over disturbed OPM geometries, the MKL based solvers turned the Free Energy into a monotonic function, allowing the use of gradient descent optimisation. As a result, we estimate the true geometry of disturbed OPM arrays with a similar error than Metropolis search, but with 90% fewer iterations and allowing a larger search space. Our proposal suggests that a exible and scalable design for sensor placement can be used to harness the potential of OPMs.
publishDate 2019
dc.date.issued.none.fl_str_mv 2019
dc.date.accessioned.none.fl_str_mv 2020-05-20T21:47:52Z
dc.date.available.none.fl_str_mv 2020-05-20T21:47:52Z
dc.type.spa.fl_str_mv info:eu-repo/semantics/doctoralThesis
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_b1a7d7d4d402bcce
dc.type.hasversion.spa.fl_str_mv info:eu-repo/semantics/draft
dc.type.coar.spa.fl_str_mv http://purl.org/coar/resource_type/c_db06
dc.type.redcol.spa.fl_str_mv https://purl.org/redcol/resource_type/TD
dc.type.local.spa.fl_str_mv Tesis/Trabajo de grado - Monografía - Doctorado
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dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/10495/14490
url http://hdl.handle.net/10495/14490
dc.language.iso.spa.fl_str_mv spa
language spa
dc.rights.*.fl_str_mv Atribución-NoComercial-SinDerivadas 2.5 Colombia (CC BY-NC-ND 2.5 CO)
dc.rights.spa.fl_str_mv info:eu-repo/semantics/openAccess
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dc.format.extent.spa.fl_str_mv 104
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.group.spa.fl_str_mv Sistemas Embebidos e Inteligencia Computacional (SISTEMIC)
dc.publisher.place.spa.fl_str_mv Medellín, Colombia
institution Universidad de Antioquia
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spelling Lopez Hincapie, Jose DavidVargas Bonilla, Jesus FranciscoDuque Muñoz, Leonardo2020-05-20T21:47:52Z2020-05-20T21:47:52Z2019http://hdl.handle.net/10495/14490ABSTRACT: Optically-pumped magnetometers (OPMs) have reached sensitivity levels that make them viable portable alternatives to traditional superconducting technology for magnetoencephalography. OPMs do not require cryogenic cooling, and can therefore be placed directly on the scalp surface. Unlike cryogenic systems based on a well characterised xed arrays essentially linear in applied ux, or electroencephalography sensors that do not need to account for sensors orientation; OPM sensors are no longer rigidly arranged with a scanner system. Therefore, uncertainty in their locations and orientations with respect to the brain, and with respect to one another, must be accounted for. In this thesis dissertation, we propose a methodology to estimate the true sensor geometry of a disturbed array. We use parametric Bayesian inversion methods to perform neural source reconstruction and score among disturbed geometries with Free Energy as a cost function. This geometry disturbance is non-linear, causing local sub-optimal values on Free Energy that we tackle with a Metropolis search. Looking for a robust solution to this sensor placement problem, we develop a Multiple Kernel Learning (MKL) approach to extract the predominant complex dynamics hidden in the data. To do this, a weighted mixture of Gaussian kernels is used to highlight the data relationships, enhancing the data-driven covariance estimation and leading to a more reliable neural source reconstruction. When tested over disturbed OPM geometries, the MKL based solvers turned the Free Energy into a monotonic function, allowing the use of gradient descent optimisation. As a result, we estimate the true geometry of disturbed OPM arrays with a similar error than Metropolis search, but with 90% fewer iterations and allowing a larger search space. Our proposal suggests that a exible and scalable design for sensor placement can be used to harness the potential of OPMs.104application/pdfspainfo:eu-repo/semantics/draftinfo:eu-repo/semantics/doctoralThesishttp://purl.org/coar/resource_type/c_db06https://purl.org/redcol/resource_type/TDTesis/Trabajo de grado - Monografía - Doctoradohttp://purl.org/coar/version/c_b1a7d7d4d402bcceAtribución-NoComercial-SinDerivadas 2.5 Colombia (CC BY-NC-ND 2.5 CO)info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-nd/2.5/co/http://purl.org/coar/access_right/c_abf2https://creativecommons.org/licenses/by-nc-nd/4.0/Brain-imaging based methodology for OPM sensor placementSistemas Embebidos e Inteligencia Computacional (SISTEMIC)Medellín, ColombiaBrainCerebroOptical instrumentsInstrumento ópticoSystems of medicineSistema médicohttp://vocabularies.unesco.org/thesaurus/concept4292http://vocabularies.unesco.org/thesaurus/concept3237http://vocabularies.unesco.org/thesaurus/concept244Doctor en Ingeniería ElectrónicaDoctoradoFacultad de Ingeniería. Doctorado en Ingeniería ElectrónicaUniversidad de AntioquiaORIGINALDuqueLeonardo_2019_BrainImagingBased.pdfDuqueLeonardo_2019_BrainImagingBased.pdfTesis doctoralapplication/pdf7008270http://bibliotecadigital.udea.edu.co/bitstream/10495/14490/1/DuqueLeonardo_2019_BrainImagingBased.pdff7a779c7006c9dc8a6365f4fa4bb491bMD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8823http://bibliotecadigital.udea.edu.co/bitstream/10495/14490/2/license_rdfb88b088d9957e670ce3b3fbe2eedbc13MD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://bibliotecadigital.udea.edu.co/bitstream/10495/14490/3/license.txt8a4605be74aa9ea9d79846c1fba20a33MD5310495/14490oai:bibliotecadigital.udea.edu.co:10495/144902021-05-21 11:44:16.759Repositorio Institucional Universidad de Antioquiaandres.perez@udea.edu.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