Genetic variability of Senepol cattle in Colombia using molecular markers
ABSTRACT: The Senepol beef cattle breed was introduced into Colombia through the use of artificial insemination and embryo transfer from a small nucleus of animals. Objective: to estimate the genetic variability of Senepol cattle in Colombia by heterologous microsatellites and to estimate gene and g...
- Autores:
-
Sepulveda Restrepo, Jeannie Cerlyn
Ángel Marín, Paula Andrea
Toro Toro, Alejandra
Corrales Álvarez, Juan David
Moreno Ochoa, Manuel Antonio
Cerón Muñoz, Mario Fernando
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2012
- Institución:
- Universidad de Antioquia
- Repositorio:
- Repositorio UdeA
- Idioma:
- eng
- OAI Identifier:
- oai:bibliotecadigital.udea.edu.co:10495/8458
- Acceso en línea:
- http://hdl.handle.net/10495/8458
- Palabra clave:
- Rights
- openAccess
- License
- Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO)
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| dc.title.spa.fl_str_mv |
Genetic variability of Senepol cattle in Colombia using molecular markers |
| dc.title.alternative.spa.fl_str_mv |
Variabilidad genética de bovinos Senepol en Colombia por marcadores moleculares |
| title |
Genetic variability of Senepol cattle in Colombia using molecular markers |
| spellingShingle |
Genetic variability of Senepol cattle in Colombia using molecular markers |
| title_short |
Genetic variability of Senepol cattle in Colombia using molecular markers |
| title_full |
Genetic variability of Senepol cattle in Colombia using molecular markers |
| title_fullStr |
Genetic variability of Senepol cattle in Colombia using molecular markers |
| title_full_unstemmed |
Genetic variability of Senepol cattle in Colombia using molecular markers |
| title_sort |
Genetic variability of Senepol cattle in Colombia using molecular markers |
| dc.creator.fl_str_mv |
Sepulveda Restrepo, Jeannie Cerlyn Ángel Marín, Paula Andrea Toro Toro, Alejandra Corrales Álvarez, Juan David Moreno Ochoa, Manuel Antonio Cerón Muñoz, Mario Fernando |
| dc.contributor.author.none.fl_str_mv |
Sepulveda Restrepo, Jeannie Cerlyn Ángel Marín, Paula Andrea Toro Toro, Alejandra Corrales Álvarez, Juan David Moreno Ochoa, Manuel Antonio Cerón Muñoz, Mario Fernando |
| description |
ABSTRACT: The Senepol beef cattle breed was introduced into Colombia through the use of artificial insemination and embryo transfer from a small nucleus of animals. Objective: to estimate the genetic variability of Senepol cattle in Colombia by heterologous microsatellites and to estimate gene and genotypic frequencies of single nucleotide polymorphic markers through calpastatin (CAST1), calpain (CALP316), and leptin (PB) genes. Methods: 412 blood samples from 28 herds were genotyped for population genetic structure with the STR: INRA32, BM2113, ETH10, BM1824, INRA037, ETH225, INRA064, SPS115, TGLA126, and TGLA122 microsatellite markers. Three SNPs of calpastatin, calpain, and leptin genes were used. Results: all microsatellites and SNP markers were polymorphic. The number of alleles ranged from 4 (BM1824) to 11 (INRA37), and the observed heterozygosity varied between 0.21 (INRA64) and 0.89 (BM2113). Combined probability of exclusion for the microsatellites was higher than 99.99%, indicating the usefulness of this set of markers for parentage testing in Senepol. Conclusions: despite being a small and closed population, this nucleus presents high genetic variability and low inbreeding. |
| publishDate |
2012 |
| dc.date.issued.none.fl_str_mv |
2012 |
| dc.date.accessioned.none.fl_str_mv |
2017-10-04T19:46:01Z |
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2017-10-04T19:46:01Z |
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info:eu-repo/semantics/article |
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http://purl.org/coar/version/c_970fb48d4fbd8a85 |
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info:eu-repo/semantics/publishedVersion |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
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https://purl.org/redcol/resource_type/ART |
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Artículo de investigación |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
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publishedVersion |
| dc.identifier.citation.spa.fl_str_mv |
Sepulveda Restrepo JC, Ángel Marín PA, Toro A, Corrales Álvarez JD, Moreno Ochoa MA, Cerón Muñoz MF. Genetic variability of Senepol cattle in Colombia using molecular markers. Rev. colomb. cienc. pecu. 2012 Jun; 25(2): 183-190 |
| dc.identifier.issn.none.fl_str_mv |
0120-0690 |
| dc.identifier.uri.none.fl_str_mv |
http://hdl.handle.net/10495/8458 |
| dc.identifier.eissn.none.fl_str_mv |
2256-2958 |
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Sepulveda Restrepo JC, Ángel Marín PA, Toro A, Corrales Álvarez JD, Moreno Ochoa MA, Cerón Muñoz MF. Genetic variability of Senepol cattle in Colombia using molecular markers. Rev. colomb. cienc. pecu. 2012 Jun; 25(2): 183-190 0120-0690 2256-2958 |
| url |
http://hdl.handle.net/10495/8458 |
| dc.language.iso.spa.fl_str_mv |
eng |
| language |
eng |
| dc.relation.ispartofjournalabbrev.spa.fl_str_mv |
Rev. Colomb. Cienc. Pecu. |
| dc.rights.*.fl_str_mv |
Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO) |
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info:eu-repo/semantics/openAccess |
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https://creativecommons.org/licenses/by-nc-sa/2.5/co/ |
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http://purl.org/coar/access_right/c_abf2 |
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https://creativecommons.org/licenses/by-nc-sa/4.0/ |
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Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO) https://creativecommons.org/licenses/by-nc-sa/2.5/co/ http://purl.org/coar/access_right/c_abf2 https://creativecommons.org/licenses/by-nc-sa/4.0/ |
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openAccess |
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application/pdf |
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Universidad de Antioquia, Facultad de Ciencias Agrarias |
| dc.publisher.group.spa.fl_str_mv |
Grupo de Investigación en Agrociencias, Biodiversidad y Territorio GAMMA |
| dc.publisher.place.spa.fl_str_mv |
Medellín, Colombia |
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Universidad de Antioquia |
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http://bibliotecadigital.udea.edu.co/bitstream/10495/8458/1/CeronMarioF_2012_GeneticVariabilitySenepol.pdf http://bibliotecadigital.udea.edu.co/bitstream/10495/8458/2/license_url http://bibliotecadigital.udea.edu.co/bitstream/10495/8458/3/license_text http://bibliotecadigital.udea.edu.co/bitstream/10495/8458/4/license_rdf http://bibliotecadigital.udea.edu.co/bitstream/10495/8458/5/license.txt |
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Sepulveda Restrepo, Jeannie CerlynÁngel Marín, Paula AndreaToro Toro, AlejandraCorrales Álvarez, Juan DavidMoreno Ochoa, Manuel AntonioCerón Muñoz, Mario Fernando2017-10-04T19:46:01Z2017-10-04T19:46:01Z2012Sepulveda Restrepo JC, Ángel Marín PA, Toro A, Corrales Álvarez JD, Moreno Ochoa MA, Cerón Muñoz MF. Genetic variability of Senepol cattle in Colombia using molecular markers. Rev. colomb. cienc. pecu. 2012 Jun; 25(2): 183-1900120-0690http://hdl.handle.net/10495/84582256-2958ABSTRACT: The Senepol beef cattle breed was introduced into Colombia through the use of artificial insemination and embryo transfer from a small nucleus of animals. Objective: to estimate the genetic variability of Senepol cattle in Colombia by heterologous microsatellites and to estimate gene and genotypic frequencies of single nucleotide polymorphic markers through calpastatin (CAST1), calpain (CALP316), and leptin (PB) genes. Methods: 412 blood samples from 28 herds were genotyped for population genetic structure with the STR: INRA32, BM2113, ETH10, BM1824, INRA037, ETH225, INRA064, SPS115, TGLA126, and TGLA122 microsatellite markers. Three SNPs of calpastatin, calpain, and leptin genes were used. Results: all microsatellites and SNP markers were polymorphic. The number of alleles ranged from 4 (BM1824) to 11 (INRA37), and the observed heterozygosity varied between 0.21 (INRA64) and 0.89 (BM2113). Combined probability of exclusion for the microsatellites was higher than 99.99%, indicating the usefulness of this set of markers for parentage testing in Senepol. Conclusions: despite being a small and closed population, this nucleus presents high genetic variability and low inbreeding.RESUMEN: El ganado Senepol fue introducido en Colombia mediante el uso de la inseminación artificial y transferencia de embriones de un pequeño núcleo de los animales. Objetivo: estimar la variabilidad genética del ganado Senepol de Colombia por medio de marcadores microsatélites y estimar las frecuencias alélicas y genotípicas de SNPs en los genes que codifican para la calpastatina (CAST1), calpaína (CALP316) y leptina (PB). Métodos: 412 muestras de sangre de animales pertenecientes a 28 fincas fueron analizados para los STRs: INRA32, BM2113, ETH10, BM1824, INRA037, ETH225, INRA064, SPS115, TGLA126 y TGLA122 y los tres SNPs. Resultados: los microsatélites y los SNPs fueron polimórficos. El número de alelos de los microsatélites variaron entre 4 (BM1824) y 11 (INRA37), la heterocigosidad observada varió entre 0.21 (INRA64) y 0.89 (BM2113). La probabilidad de exclusión para el total de microsatélites fue mayor que 99.99%, indicando que el conjunto de microsatélites pueden ser usados para pruebas de filiación. Conclusiones: a pesar de ser una población pequeña y cerrada, este núcleo presenta una alta variabilidad genética y baja consanguinidad.COL0006779application/pdfengUniversidad de Antioquia, Facultad de Ciencias AgrariasGrupo de Investigación en Agrociencias, Biodiversidad y Territorio GAMMAMedellín, Colombiainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARTArtículo de investigaciónhttp://purl.org/coar/version/c_970fb48d4fbd8a85Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO)info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/co/http://purl.org/coar/access_right/c_abf2https://creativecommons.org/licenses/by-nc-sa/4.0/Genetic variability of Senepol cattle in Colombia using molecular markersVariabilidad genética de bovinos Senepol en Colombia por marcadores molecularesRev. Colomb. Cienc. Pecu.Revista Colombiana de Ciencias Pecuarias183190252ORIGINALCeronMarioF_2012_GeneticVariabilitySenepol.pdfCeronMarioF_2012_GeneticVariabilitySenepol.pdfArtículo de investigaciónapplication/pdf292136http://bibliotecadigital.udea.edu.co/bitstream/10495/8458/1/CeronMarioF_2012_GeneticVariabilitySenepol.pdf23bcbcc6d423db4e1b2b498b8a725956MD51CC-LICENSElicense_urllicense_urltext/plain; charset=utf-849http://bibliotecadigital.udea.edu.co/bitstream/10495/8458/2/license_url4afdbb8c545fd630ea7db775da747b2fMD52license_textlicense_texttext/html; charset=utf-80http://bibliotecadigital.udea.edu.co/bitstream/10495/8458/3/license_textd41d8cd98f00b204e9800998ecf8427eMD53license_rdflicense_rdfapplication/rdf+xml; charset=utf-80http://bibliotecadigital.udea.edu.co/bitstream/10495/8458/4/license_rdfd41d8cd98f00b204e9800998ecf8427eMD54LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://bibliotecadigital.udea.edu.co/bitstream/10495/8458/5/license.txt8a4605be74aa9ea9d79846c1fba20a33MD5510495/8458oai:bibliotecadigital.udea.edu.co:10495/84582021-05-21 20:30:14.363Repositorio Institucional Universidad de Antioquiaandres.perez@udea.edu.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 |