A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint
ABSTRACT: The integration of mathematical modeling and experimental testing is emerging as a powerful approach for improving our understanding of the regulation of metabolic pathways. In this study, we report on the development of a kinetic mathematical model that accurately simulates the developmen...
- Autores:
-
Turner, Glenn W.
Lee, James M.
Croteau, Rodney B.
Lange, B. Markus
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2008
- Institución:
- Universidad de Antioquia
- Repositorio:
- Repositorio UdeA
- Idioma:
- eng
- OAI Identifier:
- oai:bibliotecadigital.udea.edu.co:10495/9286
- Acceso en línea:
- http://hdl.handle.net/10495/9286
- Palabra clave:
- Biosíntesis
Biosynthesis
Pulegona reductasa
Isoprenoide Menthofurano
Modelado cinético
kinetic modeling
Sistemas biológicos
Biological systems
Biosynthesis and Biochemistry
- Rights
- openAccess
- License
- Atribución-NoComercial-SinDerivadas 2.5 Colombia
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|
dc.title.spa.fl_str_mv |
A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint |
title |
A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint |
spellingShingle |
A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint Biosíntesis Biosynthesis Pulegona reductasa Isoprenoide Menthofurano Modelado cinético kinetic modeling Sistemas biológicos Biological systems Biosynthesis and Biochemistry |
title_short |
A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint |
title_full |
A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint |
title_fullStr |
A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint |
title_full_unstemmed |
A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint |
title_sort |
A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint |
dc.creator.fl_str_mv |
Turner, Glenn W. Lee, James M. Croteau, Rodney B. Lange, B. Markus |
dc.contributor.author.none.fl_str_mv |
Turner, Glenn W. Lee, James M. Croteau, Rodney B. Lange, B. Markus |
dc.subject.none.fl_str_mv |
Biosíntesis Biosynthesis Pulegona reductasa Isoprenoide Menthofurano Modelado cinético kinetic modeling Sistemas biológicos Biological systems Biosynthesis and Biochemistry |
topic |
Biosíntesis Biosynthesis Pulegona reductasa Isoprenoide Menthofurano Modelado cinético kinetic modeling Sistemas biológicos Biological systems Biosynthesis and Biochemistry |
description |
ABSTRACT: The integration of mathematical modeling and experimental testing is emerging as a powerful approach for improving our understanding of the regulation of metabolic pathways. In this study, we report on the development of a kinetic mathematical model that accurately simulates the developmental patterns of monoterpenoid essential oil accumulation in peppermint (Mentha x piperita). This model was then used to evaluate the biochemical processes underlying experimentally determined changes in the monoterpene pathway under low ambient-light intensities, which led to an accumulation of the branchpoint intermediate (+)-pulegone and the side product (+)-menthofuran. Our simulations indicated that the environmentally regulated changes in monoterpene profiles could only be explained when, in addition to effects on biosynthetic enzyme activities, as yet unidentified inhibitory effects of ( )-menthofuran on the branchpoint enzyme pulegone reductase (PR) were assumed. Subsequent in vitro analyses with recombinant protein confirmed that (+)-menthofuran acts as a weak competitive inhibitor of PR (Ki 300 uM). To evaluate whether the intracellular concentration of (+)-menthofuran was high enough for PR inhibition in vivo, we isolated essential oil-synthesizing secretory cells from peppermint leaves and subjected them to steam distillations. When peppermint plants were grown underlow-light conditions, (+)- menthofuran was selectively retained in secretory cells and accumulated to very high levels (up to 20 mM), whereas under regular growth conditions, (+)-menthofuran levels remained very low (<400 uM). These results illustrate the utility of iterative cycles of mathematical modeling and experimental testing to elucidate the mechanisms controlling flux through metabolic pathways. |
publishDate |
2008 |
dc.date.issued.none.fl_str_mv |
2008 |
dc.date.accessioned.none.fl_str_mv |
2018-03-23T19:21:52Z |
dc.date.available.none.fl_str_mv |
2018-03-23T19:21:52Z |
dc.type.spa.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a86 http://purl.org/coar/version/c_970fb48d4fbd8a85 |
dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_2df8fbb1 |
dc.type.redcol.spa.fl_str_mv |
https://purl.org/redcol/resource_type/ART |
dc.type.local.spa.fl_str_mv |
Artículo de investigación |
format |
http://purl.org/coar/resource_type/c_2df8fbb1 |
dc.identifier.citation.spa.fl_str_mv |
R. Rios-Estepa, G. W. Turner, J. M. Lee, R. B. Croteau and B. M. Lange, "A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint," Proceedings of the National Academy of Sciences of the United States of America, vol. 15, no. 8, pp. 2818-2823, 2008. |
dc.identifier.issn.none.fl_str_mv |
1091-6490 |
dc.identifier.uri.none.fl_str_mv |
http://hdl.handle.net/10495/9286 |
dc.identifier.doi.none.fl_str_mv |
10.1073/pnas.0712314105 |
dc.identifier.eissn.none.fl_str_mv |
0027-8424 |
identifier_str_mv |
R. Rios-Estepa, G. W. Turner, J. M. Lee, R. B. Croteau and B. M. Lange, "A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint," Proceedings of the National Academy of Sciences of the United States of America, vol. 15, no. 8, pp. 2818-2823, 2008. 1091-6490 10.1073/pnas.0712314105 0027-8424 |
url |
http://hdl.handle.net/10495/9286 |
dc.language.iso.spa.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartofjournalabbrev.spa.fl_str_mv |
pnas |
dc.rights.*.fl_str_mv |
Atribución-NoComercial-SinDerivadas 2.5 Colombia |
dc.rights.spa.fl_str_mv |
info:eu-repo/semantics/openAccess |
dc.rights.uri.*.fl_str_mv |
http://creativecommons.org/licenses/by-nc-nd/2.5/co/ |
dc.rights.accessrights.spa.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
dc.rights.creativecommons.spa.fl_str_mv |
https://creativecommons.org/licenses/by-nc-nd/4.0/ |
rights_invalid_str_mv |
Atribución-NoComercial-SinDerivadas 2.5 Colombia http://creativecommons.org/licenses/by-nc-nd/2.5/co/ http://purl.org/coar/access_right/c_abf2 https://creativecommons.org/licenses/by-nc-nd/4.0/ |
eu_rights_str_mv |
openAccess |
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5 |
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application/pdf |
dc.publisher.spa.fl_str_mv |
National Academy of Sciences |
dc.publisher.group.spa.fl_str_mv |
Bioprocesos |
dc.publisher.place.spa.fl_str_mv |
Estados Unidos |
institution |
Universidad de Antioquia |
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Turner, Glenn W.Lee, James M.Croteau, Rodney B.Lange, B. Markus2018-03-23T19:21:52Z2018-03-23T19:21:52Z2008R. Rios-Estepa, G. W. Turner, J. M. Lee, R. B. Croteau and B. M. Lange, "A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint," Proceedings of the National Academy of Sciences of the United States of America, vol. 15, no. 8, pp. 2818-2823, 2008.1091-6490http://hdl.handle.net/10495/928610.1073/pnas.07123141050027-8424ABSTRACT: The integration of mathematical modeling and experimental testing is emerging as a powerful approach for improving our understanding of the regulation of metabolic pathways. In this study, we report on the development of a kinetic mathematical model that accurately simulates the developmental patterns of monoterpenoid essential oil accumulation in peppermint (Mentha x piperita). This model was then used to evaluate the biochemical processes underlying experimentally determined changes in the monoterpene pathway under low ambient-light intensities, which led to an accumulation of the branchpoint intermediate (+)-pulegone and the side product (+)-menthofuran. Our simulations indicated that the environmentally regulated changes in monoterpene profiles could only be explained when, in addition to effects on biosynthetic enzyme activities, as yet unidentified inhibitory effects of ( )-menthofuran on the branchpoint enzyme pulegone reductase (PR) were assumed. Subsequent in vitro analyses with recombinant protein confirmed that (+)-menthofuran acts as a weak competitive inhibitor of PR (Ki 300 uM). To evaluate whether the intracellular concentration of (+)-menthofuran was high enough for PR inhibition in vivo, we isolated essential oil-synthesizing secretory cells from peppermint leaves and subjected them to steam distillations. When peppermint plants were grown underlow-light conditions, (+)- menthofuran was selectively retained in secretory cells and accumulated to very high levels (up to 20 mM), whereas under regular growth conditions, (+)-menthofuran levels remained very low (<400 uM). These results illustrate the utility of iterative cycles of mathematical modeling and experimental testing to elucidate the mechanisms controlling flux through metabolic pathways.5application/pdfengNational Academy of SciencesBioprocesosEstados Unidosinfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARTArtículo de investigaciónhttp://purl.org/coar/version/c_970fb48d4fbd8a86http://purl.org/coar/version/c_970fb48d4fbd8a85Atribución-NoComercial-SinDerivadas 2.5 Colombiainfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-nd/2.5/co/http://purl.org/coar/access_right/c_abf2https://creativecommons.org/licenses/by-nc-nd/4.0/BiosíntesisBiosynthesisPulegona reductasaIsoprenoide MenthofuranoModelado cinéticokinetic modelingSistemas biológicosBiological systemsBiosynthesis and BiochemistryA systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermintpnasProceedings of the National Academy of Sciences281828231058LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://bibliotecadigital.udea.edu.co/bitstream/10495/9286/5/license.txt8a4605be74aa9ea9d79846c1fba20a33MD55ORIGINALRiosRigoberto_2007_BiochemicalMechanismsMonoterpenoid.pdfRiosRigoberto_2007_BiochemicalMechanismsMonoterpenoid.pdfArtículo de investigaciónapplication/pdf768005http://bibliotecadigital.udea.edu.co/bitstream/10495/9286/1/RiosRigoberto_2007_BiochemicalMechanismsMonoterpenoid.pdf5df84c08daa615a28fc5b62fd4e700d5MD51CC-LICENSElicense_urllicense_urltext/plain; charset=utf-849http://bibliotecadigital.udea.edu.co/bitstream/10495/9286/2/license_url4afdbb8c545fd630ea7db775da747b2fMD52license_textlicense_texttext/html; charset=utf-80http://bibliotecadigital.udea.edu.co/bitstream/10495/9286/3/license_textd41d8cd98f00b204e9800998ecf8427eMD53license_rdflicense_rdfLicenciaapplication/rdf+xml; charset=utf-80http://bibliotecadigital.udea.edu.co/bitstream/10495/9286/4/license_rdfd41d8cd98f00b204e9800998ecf8427eMD5410495/9286oai:bibliotecadigital.udea.edu.co:10495/92862021-06-04 10:03:41.014Repositorio Institucional Universidad de Antioquiaandres.perez@udea.edu.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 |