A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint

ABSTRACT: The integration of mathematical modeling and experimental testing is emerging as a powerful approach for improving our understanding of the regulation of metabolic pathways. In this study, we report on the development of a kinetic mathematical model that accurately simulates the developmen...

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Autores:
Turner, Glenn W.
Lee, James M.
Croteau, Rodney B.
Lange, B. Markus
Tipo de recurso:
Article of investigation
Fecha de publicación:
2008
Institución:
Universidad de Antioquia
Repositorio:
Repositorio UdeA
Idioma:
eng
OAI Identifier:
oai:bibliotecadigital.udea.edu.co:10495/9286
Acceso en línea:
http://hdl.handle.net/10495/9286
Palabra clave:
Biosíntesis
Biosynthesis
Pulegona reductasa
Isoprenoide Menthofurano
Modelado cinético
kinetic modeling
Sistemas biológicos
Biological systems
Biosynthesis and Biochemistry
Rights
openAccess
License
Atribución-NoComercial-SinDerivadas 2.5 Colombia
id UDEA2_4f2ca6e021c5fdb825e7ef00033bf091
oai_identifier_str oai:bibliotecadigital.udea.edu.co:10495/9286
network_acronym_str UDEA2
network_name_str Repositorio UdeA
repository_id_str
dc.title.spa.fl_str_mv A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint
title A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint
spellingShingle A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint
Biosíntesis
Biosynthesis
Pulegona reductasa
Isoprenoide Menthofurano
Modelado cinético
kinetic modeling
Sistemas biológicos
Biological systems
Biosynthesis and Biochemistry
title_short A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint
title_full A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint
title_fullStr A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint
title_full_unstemmed A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint
title_sort A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint
dc.creator.fl_str_mv Turner, Glenn W.
Lee, James M.
Croteau, Rodney B.
Lange, B. Markus
dc.contributor.author.none.fl_str_mv Turner, Glenn W.
Lee, James M.
Croteau, Rodney B.
Lange, B. Markus
dc.subject.none.fl_str_mv Biosíntesis
Biosynthesis
Pulegona reductasa
Isoprenoide Menthofurano
Modelado cinético
kinetic modeling
Sistemas biológicos
Biological systems
Biosynthesis and Biochemistry
topic Biosíntesis
Biosynthesis
Pulegona reductasa
Isoprenoide Menthofurano
Modelado cinético
kinetic modeling
Sistemas biológicos
Biological systems
Biosynthesis and Biochemistry
description ABSTRACT: The integration of mathematical modeling and experimental testing is emerging as a powerful approach for improving our understanding of the regulation of metabolic pathways. In this study, we report on the development of a kinetic mathematical model that accurately simulates the developmental patterns of monoterpenoid essential oil accumulation in peppermint (Mentha x piperita). This model was then used to evaluate the biochemical processes underlying experimentally determined changes in the monoterpene pathway under low ambient-light intensities, which led to an accumulation of the branchpoint intermediate (+)-pulegone and the side product (+)-menthofuran. Our simulations indicated that the environmentally regulated changes in monoterpene profiles could only be explained when, in addition to effects on biosynthetic enzyme activities, as yet unidentified inhibitory effects of ( )-menthofuran on the branchpoint enzyme pulegone reductase (PR) were assumed. Subsequent in vitro analyses with recombinant protein confirmed that (+)-menthofuran acts as a weak competitive inhibitor of PR (Ki 300 uM). To evaluate whether the intracellular concentration of (+)-menthofuran was high enough for PR inhibition in vivo, we isolated essential oil-synthesizing secretory cells from peppermint leaves and subjected them to steam distillations. When peppermint plants were grown underlow-light conditions, (+)- menthofuran was selectively retained in secretory cells and accumulated to very high levels (up to 20 mM), whereas under regular growth conditions, (+)-menthofuran levels remained very low (<400 uM). These results illustrate the utility of iterative cycles of mathematical modeling and experimental testing to elucidate the mechanisms controlling flux through metabolic pathways.
publishDate 2008
dc.date.issued.none.fl_str_mv 2008
dc.date.accessioned.none.fl_str_mv 2018-03-23T19:21:52Z
dc.date.available.none.fl_str_mv 2018-03-23T19:21:52Z
dc.type.spa.fl_str_mv info:eu-repo/semantics/article
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http://purl.org/coar/version/c_970fb48d4fbd8a85
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dc.type.local.spa.fl_str_mv Artículo de investigación
format http://purl.org/coar/resource_type/c_2df8fbb1
dc.identifier.citation.spa.fl_str_mv R. Rios-Estepa, G. W. Turner, J. M. Lee, R. B. Croteau and B. M. Lange, "A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint," Proceedings of the National Academy of Sciences of the United States of America, vol. 15, no. 8, pp. 2818-2823, 2008.
dc.identifier.issn.none.fl_str_mv 1091-6490
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/10495/9286
dc.identifier.doi.none.fl_str_mv 10.1073/pnas.0712314105
dc.identifier.eissn.none.fl_str_mv 0027-8424
identifier_str_mv R. Rios-Estepa, G. W. Turner, J. M. Lee, R. B. Croteau and B. M. Lange, "A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint," Proceedings of the National Academy of Sciences of the United States of America, vol. 15, no. 8, pp. 2818-2823, 2008.
1091-6490
10.1073/pnas.0712314105
0027-8424
url http://hdl.handle.net/10495/9286
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.ispartofjournalabbrev.spa.fl_str_mv pnas
dc.rights.*.fl_str_mv Atribución-NoComercial-SinDerivadas 2.5 Colombia
dc.rights.spa.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by-nc-nd/2.5/co/
dc.rights.accessrights.spa.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.creativecommons.spa.fl_str_mv https://creativecommons.org/licenses/by-nc-nd/4.0/
rights_invalid_str_mv Atribución-NoComercial-SinDerivadas 2.5 Colombia
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eu_rights_str_mv openAccess
dc.format.extent.spa.fl_str_mv 5
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv National Academy of Sciences
dc.publisher.group.spa.fl_str_mv Bioprocesos
dc.publisher.place.spa.fl_str_mv Estados Unidos
institution Universidad de Antioquia
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spelling Turner, Glenn W.Lee, James M.Croteau, Rodney B.Lange, B. Markus2018-03-23T19:21:52Z2018-03-23T19:21:52Z2008R. Rios-Estepa, G. W. Turner, J. M. Lee, R. B. Croteau and B. M. Lange, "A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint," Proceedings of the National Academy of Sciences of the United States of America, vol. 15, no. 8, pp. 2818-2823, 2008.1091-6490http://hdl.handle.net/10495/928610.1073/pnas.07123141050027-8424ABSTRACT: The integration of mathematical modeling and experimental testing is emerging as a powerful approach for improving our understanding of the regulation of metabolic pathways. In this study, we report on the development of a kinetic mathematical model that accurately simulates the developmental patterns of monoterpenoid essential oil accumulation in peppermint (Mentha x piperita). This model was then used to evaluate the biochemical processes underlying experimentally determined changes in the monoterpene pathway under low ambient-light intensities, which led to an accumulation of the branchpoint intermediate (+)-pulegone and the side product (+)-menthofuran. Our simulations indicated that the environmentally regulated changes in monoterpene profiles could only be explained when, in addition to effects on biosynthetic enzyme activities, as yet unidentified inhibitory effects of ( )-menthofuran on the branchpoint enzyme pulegone reductase (PR) were assumed. Subsequent in vitro analyses with recombinant protein confirmed that (+)-menthofuran acts as a weak competitive inhibitor of PR (Ki 300 uM). To evaluate whether the intracellular concentration of (+)-menthofuran was high enough for PR inhibition in vivo, we isolated essential oil-synthesizing secretory cells from peppermint leaves and subjected them to steam distillations. When peppermint plants were grown underlow-light conditions, (+)- menthofuran was selectively retained in secretory cells and accumulated to very high levels (up to 20 mM), whereas under regular growth conditions, (+)-menthofuran levels remained very low (<400 uM). 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