Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds

ABSTRACT: The aim of this study was to establish the protocol of conventional and real time PCR for amplification of Mycobacterium avium subsp. paratuberculosis (MAP) genome from bovine fecal samples, as a way to define strategies for establishing a prevention and control program in a dairy herd at...

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Autores:
Zapata Restrepo, Margarita María
Arroyave Henao, Ofelia
Ramírez García, René
Piedrahita Ochoa, Christian Alberto
Rodas González, Juan David
Maldonado Estrada, Juan Guillermo
Tipo de recurso:
Article of investigation
Fecha de publicación:
2010
Institución:
Universidad de Antioquia
Repositorio:
Repositorio UdeA
Idioma:
eng
OAI Identifier:
oai:bibliotecadigital.udea.edu.co:10495/8080
Acceso en línea:
http://hdl.handle.net/10495/8080
Palabra clave:
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openAccess
License
Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO)
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oai_identifier_str oai:bibliotecadigital.udea.edu.co:10495/8080
network_acronym_str UDEA2
network_name_str Repositorio UdeA
repository_id_str
dc.title.spa.fl_str_mv Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds
dc.title.alternative.spa.fl_str_mv Identificación de mycobacterium avium subspecies paratuberculosis mediante pruebas de PCR y definición de programa de control de la paratuberculosis bovina en hatos lecheros
title Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds
spellingShingle Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds
title_short Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds
title_full Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds
title_fullStr Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds
title_full_unstemmed Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds
title_sort Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds
dc.creator.fl_str_mv Zapata Restrepo, Margarita María
Arroyave Henao, Ofelia
Ramírez García, René
Piedrahita Ochoa, Christian Alberto
Rodas González, Juan David
Maldonado Estrada, Juan Guillermo
dc.contributor.author.none.fl_str_mv Zapata Restrepo, Margarita María
Arroyave Henao, Ofelia
Ramírez García, René
Piedrahita Ochoa, Christian Alberto
Rodas González, Juan David
Maldonado Estrada, Juan Guillermo
description ABSTRACT: The aim of this study was to establish the protocol of conventional and real time PCR for amplification of Mycobacterium avium subsp. paratuberculosis (MAP) genome from bovine fecal samples, as a way to define strategies for establishing a prevention and control program in a dairy herd at the Universidad de Antioquia (Medellín, Colombia). Fecal samples were individually taken of clinical healthy cows or cows with diarrhea bred in a herd enzootic for Johne’s disease, were processed them for culture in liquid Middlebrook 7H9 media supplemented with mycobactin under two different protocols: with or without inhibitors. Fecal samples from clinically healthy cows were used as negative control. Conventional and real time PCR were performed with MAP DNA obtained of fecal or cultured samples. The MAP- specific IS900 segment was amplified by using the respective forward and reverse primers. DNA isolated from a reference MAP strain was used as positive control of PCR. Data were analyzed by descriptive statistics and simple regression analysis between PCR and culture results were performed. All samples cultured in media with or without mycobactin gave a positive result compatible with MAP growth. However, only 13,3% of samples were positive by real time PCR. There was no relationship neither between PCR and culture results, nor between clinical condition of the cow and MAP positivity. These results support the need combine culture of feces with PCR diagnosis for identification of MAP-excreting cows in a dairy herd. Finally, a strategy of prevention and control of bovine paratuberculosis is proposed for this enzootic herd and for dairy herds in Colombia.
publishDate 2010
dc.date.issued.none.fl_str_mv 2010
dc.date.accessioned.none.fl_str_mv 2017-08-31T19:01:28Z
dc.date.available.none.fl_str_mv 2017-08-31T19:01:28Z
dc.type.spa.fl_str_mv info:eu-repo/semantics/article
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dc.type.local.spa.fl_str_mv Artículo de investigación
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dc.identifier.citation.spa.fl_str_mv Zapata Restrepo MM, Arroyave Henao O, Ramírez García R, Piedrahita Ochoa CA, Rodas González JD, Maldonado Estrada JG. Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds. Rev. Colomb. Cienc. Pecu. 2010;23(1):17-27
dc.identifier.issn.none.fl_str_mv 0120-0690
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/10495/8080
dc.identifier.eissn.none.fl_str_mv 2256-2958
identifier_str_mv Zapata Restrepo MM, Arroyave Henao O, Ramírez García R, Piedrahita Ochoa CA, Rodas González JD, Maldonado Estrada JG. Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds. Rev. Colomb. Cienc. Pecu. 2010;23(1):17-27
0120-0690
2256-2958
url http://hdl.handle.net/10495/8080
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.ispartofjournalabbrev.spa.fl_str_mv Rev. Colomb. Cienc. Pecu.
dc.rights.*.fl_str_mv Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO)
dc.rights.spa.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.uri.*.fl_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/co/
dc.rights.accessrights.spa.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.creativecommons.spa.fl_str_mv https://creativecommons.org/licenses/by-nc-sa/4.0/
rights_invalid_str_mv Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO)
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eu_rights_str_mv openAccess
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Universidad de Antioquia, Facultad de Ciencias Agrarias
dc.publisher.group.spa.fl_str_mv CENTAURO
dc.publisher.place.spa.fl_str_mv Medellín, Colombia
institution Universidad de Antioquia
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spelling Zapata Restrepo, Margarita MaríaArroyave Henao, OfeliaRamírez García, RenéPiedrahita Ochoa, Christian AlbertoRodas González, Juan DavidMaldonado Estrada, Juan Guillermo2017-08-31T19:01:28Z2017-08-31T19:01:28Z2010Zapata Restrepo MM, Arroyave Henao O, Ramírez García R, Piedrahita Ochoa CA, Rodas González JD, Maldonado Estrada JG. Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds. Rev. Colomb. Cienc. Pecu. 2010;23(1):17-270120-0690http://hdl.handle.net/10495/80802256-2958ABSTRACT: The aim of this study was to establish the protocol of conventional and real time PCR for amplification of Mycobacterium avium subsp. paratuberculosis (MAP) genome from bovine fecal samples, as a way to define strategies for establishing a prevention and control program in a dairy herd at the Universidad de Antioquia (Medellín, Colombia). Fecal samples were individually taken of clinical healthy cows or cows with diarrhea bred in a herd enzootic for Johne’s disease, were processed them for culture in liquid Middlebrook 7H9 media supplemented with mycobactin under two different protocols: with or without inhibitors. Fecal samples from clinically healthy cows were used as negative control. Conventional and real time PCR were performed with MAP DNA obtained of fecal or cultured samples. The MAP- specific IS900 segment was amplified by using the respective forward and reverse primers. DNA isolated from a reference MAP strain was used as positive control of PCR. Data were analyzed by descriptive statistics and simple regression analysis between PCR and culture results were performed. All samples cultured in media with or without mycobactin gave a positive result compatible with MAP growth. However, only 13,3% of samples were positive by real time PCR. There was no relationship neither between PCR and culture results, nor between clinical condition of the cow and MAP positivity. These results support the need combine culture of feces with PCR diagnosis for identification of MAP-excreting cows in a dairy herd. Finally, a strategy of prevention and control of bovine paratuberculosis is proposed for this enzootic herd and for dairy herds in Colombia.RESUMEN: El objetivo de este trabajo fue establecer un sistema de detección y amplificación del Mycobacterium avium paratuberculosis (MAP) a partir de muestras de materia fecal bovina, mediante el uso de la técnica de PCR en tiempo real, como estrategia de apoyo para el establecimiento de un programa de prevención detección y control de la paratuberculosis bovina en el hato lechero de la Universidad de Antioquia. Muestras de materia fecal fueron tomadas de bovinos provenientes de un hato enzoótico para la enfermedad de Johne, fueron cultivadas en medio de cultivo líquido Middlebrook 7H9 suplementado con micobactina, bajo dos protocolos de aislamiento: con o sin inhibidores. Como control negativo fue utilizada muestras de materia fecal de bovinos clínicamente sanos. Adicionalmente, con el DNA de las muestras aisladas en cultivo y de las muestras de materia fecal, fueron hechas pruebas de PCR convencional y en tiempo real, para la amplificación del elemento de inserción IS900 del MAP, mediante el uso de cebadores específicos para este elemento. Como control positivo se utilizó DNA de MAP de una cepa de referencia. Los resultados fueron evaluados mediante estadística descriptiva y la comparación entre el resultado del cultivo y de la prueba de PCR fue evaluado mediante regresión simple. Los resultados del cultivo bacteriológico, mostraron un total de 15 muestras con crecimiento compatible con MAP, el cual fue verificado por prueba de PCR en el 13.3% de los casos. No hubo correlación entre el resultado de cultivo y la prueba de PCR ni entre el estado clínico y la positividad al MAP. Los resultados confirman la necesidad de combinar el diagnóstico molecular con el cultivo bacteriológico para identificar las vacas positivas en un hato. Finalmente, una estrategia de prevención y control de la enfermedad aplicable a este hato enzoótico y a los hatos lecheros en Colombia es discutida.COL0001262application/pdfengUniversidad de Antioquia, Facultad de Ciencias AgrariasCENTAUROMedellín, Colombiainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARTArtículo de investigaciónhttp://purl.org/coar/version/c_970fb48d4fbd8a85Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO)info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/co/http://purl.org/coar/access_right/c_abf2https://creativecommons.org/licenses/by-nc-sa/4.0/Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herdsIdentificación de mycobacterium avium subspecies paratuberculosis mediante pruebas de PCR y definición de programa de control de la paratuberculosis bovina en hatos lecherosRev. Colomb. Cienc. Pecu.Revista Colombiana de Ciencias Pecuarias1727231ORIGINALZapataMargarita_2010_IdentificationMycobacteriumAvium.pdfZapataMargarita_2010_IdentificationMycobacteriumAvium.pdfArtículo de investigaciónapplication/pdf326587http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/1/ZapataMargarita_2010_IdentificationMycobacteriumAvium.pdf16f1b0c54c5ba95af6c8090366100e4aMD51CC-LICENSElicense_urllicense_urltext/plain; charset=utf-849http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/2/license_url4afdbb8c545fd630ea7db775da747b2fMD52license_textlicense_texttext/html; charset=utf-80http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/3/license_textd41d8cd98f00b204e9800998ecf8427eMD53license_rdflicense_rdfapplication/rdf+xml; charset=utf-80http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/4/license_rdfd41d8cd98f00b204e9800998ecf8427eMD54LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/5/license.txt8a4605be74aa9ea9d79846c1fba20a33MD5510495/8080oai:bibliotecadigital.udea.edu.co:10495/80802021-05-21 20:28:50.019Repositorio Institucional Universidad de Antioquiaandres.perez@udea.edu.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