Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds
ABSTRACT: The aim of this study was to establish the protocol of conventional and real time PCR for amplification of Mycobacterium avium subsp. paratuberculosis (MAP) genome from bovine fecal samples, as a way to define strategies for establishing a prevention and control program in a dairy herd at...
- Autores:
-
Zapata Restrepo, Margarita María
Arroyave Henao, Ofelia
Ramírez García, René
Piedrahita Ochoa, Christian Alberto
Rodas González, Juan David
Maldonado Estrada, Juan Guillermo
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2010
- Institución:
- Universidad de Antioquia
- Repositorio:
- Repositorio UdeA
- Idioma:
- eng
- OAI Identifier:
- oai:bibliotecadigital.udea.edu.co:10495/8080
- Acceso en línea:
- http://hdl.handle.net/10495/8080
- Palabra clave:
- Rights
- openAccess
- License
- Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO)
id |
UDEA2_33611b59c19061186b651662eb8ab32f |
---|---|
oai_identifier_str |
oai:bibliotecadigital.udea.edu.co:10495/8080 |
network_acronym_str |
UDEA2 |
network_name_str |
Repositorio UdeA |
repository_id_str |
|
dc.title.spa.fl_str_mv |
Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds |
dc.title.alternative.spa.fl_str_mv |
Identificación de mycobacterium avium subspecies paratuberculosis mediante pruebas de PCR y definición de programa de control de la paratuberculosis bovina en hatos lecheros |
title |
Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds |
spellingShingle |
Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds |
title_short |
Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds |
title_full |
Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds |
title_fullStr |
Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds |
title_full_unstemmed |
Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds |
title_sort |
Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds |
dc.creator.fl_str_mv |
Zapata Restrepo, Margarita María Arroyave Henao, Ofelia Ramírez García, René Piedrahita Ochoa, Christian Alberto Rodas González, Juan David Maldonado Estrada, Juan Guillermo |
dc.contributor.author.none.fl_str_mv |
Zapata Restrepo, Margarita María Arroyave Henao, Ofelia Ramírez García, René Piedrahita Ochoa, Christian Alberto Rodas González, Juan David Maldonado Estrada, Juan Guillermo |
description |
ABSTRACT: The aim of this study was to establish the protocol of conventional and real time PCR for amplification of Mycobacterium avium subsp. paratuberculosis (MAP) genome from bovine fecal samples, as a way to define strategies for establishing a prevention and control program in a dairy herd at the Universidad de Antioquia (Medellín, Colombia). Fecal samples were individually taken of clinical healthy cows or cows with diarrhea bred in a herd enzootic for Johne’s disease, were processed them for culture in liquid Middlebrook 7H9 media supplemented with mycobactin under two different protocols: with or without inhibitors. Fecal samples from clinically healthy cows were used as negative control. Conventional and real time PCR were performed with MAP DNA obtained of fecal or cultured samples. The MAP- specific IS900 segment was amplified by using the respective forward and reverse primers. DNA isolated from a reference MAP strain was used as positive control of PCR. Data were analyzed by descriptive statistics and simple regression analysis between PCR and culture results were performed. All samples cultured in media with or without mycobactin gave a positive result compatible with MAP growth. However, only 13,3% of samples were positive by real time PCR. There was no relationship neither between PCR and culture results, nor between clinical condition of the cow and MAP positivity. These results support the need combine culture of feces with PCR diagnosis for identification of MAP-excreting cows in a dairy herd. Finally, a strategy of prevention and control of bovine paratuberculosis is proposed for this enzootic herd and for dairy herds in Colombia. |
publishDate |
2010 |
dc.date.issued.none.fl_str_mv |
2010 |
dc.date.accessioned.none.fl_str_mv |
2017-08-31T19:01:28Z |
dc.date.available.none.fl_str_mv |
2017-08-31T19:01:28Z |
dc.type.spa.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
dc.type.hasversion.spa.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_2df8fbb1 |
dc.type.redcol.spa.fl_str_mv |
https://purl.org/redcol/resource_type/ART |
dc.type.local.spa.fl_str_mv |
Artículo de investigación |
format |
http://purl.org/coar/resource_type/c_2df8fbb1 |
status_str |
publishedVersion |
dc.identifier.citation.spa.fl_str_mv |
Zapata Restrepo MM, Arroyave Henao O, Ramírez García R, Piedrahita Ochoa CA, Rodas González JD, Maldonado Estrada JG. Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds. Rev. Colomb. Cienc. Pecu. 2010;23(1):17-27 |
dc.identifier.issn.none.fl_str_mv |
0120-0690 |
dc.identifier.uri.none.fl_str_mv |
http://hdl.handle.net/10495/8080 |
dc.identifier.eissn.none.fl_str_mv |
2256-2958 |
identifier_str_mv |
Zapata Restrepo MM, Arroyave Henao O, Ramírez García R, Piedrahita Ochoa CA, Rodas González JD, Maldonado Estrada JG. Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds. Rev. Colomb. Cienc. Pecu. 2010;23(1):17-27 0120-0690 2256-2958 |
url |
http://hdl.handle.net/10495/8080 |
dc.language.iso.spa.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartofjournalabbrev.spa.fl_str_mv |
Rev. Colomb. Cienc. Pecu. |
dc.rights.*.fl_str_mv |
Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO) |
dc.rights.spa.fl_str_mv |
info:eu-repo/semantics/openAccess |
dc.rights.uri.*.fl_str_mv |
https://creativecommons.org/licenses/by-nc-sa/2.5/co/ |
dc.rights.accessrights.spa.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
dc.rights.creativecommons.spa.fl_str_mv |
https://creativecommons.org/licenses/by-nc-sa/4.0/ |
rights_invalid_str_mv |
Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO) https://creativecommons.org/licenses/by-nc-sa/2.5/co/ http://purl.org/coar/access_right/c_abf2 https://creativecommons.org/licenses/by-nc-sa/4.0/ |
eu_rights_str_mv |
openAccess |
dc.format.mimetype.spa.fl_str_mv |
application/pdf |
dc.publisher.spa.fl_str_mv |
Universidad de Antioquia, Facultad de Ciencias Agrarias |
dc.publisher.group.spa.fl_str_mv |
CENTAURO |
dc.publisher.place.spa.fl_str_mv |
Medellín, Colombia |
institution |
Universidad de Antioquia |
bitstream.url.fl_str_mv |
http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/1/ZapataMargarita_2010_IdentificationMycobacteriumAvium.pdf http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/2/license_url http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/3/license_text http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/4/license_rdf http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/5/license.txt |
bitstream.checksum.fl_str_mv |
16f1b0c54c5ba95af6c8090366100e4a 4afdbb8c545fd630ea7db775da747b2f d41d8cd98f00b204e9800998ecf8427e d41d8cd98f00b204e9800998ecf8427e 8a4605be74aa9ea9d79846c1fba20a33 |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 MD5 |
repository.name.fl_str_mv |
Repositorio Institucional Universidad de Antioquia |
repository.mail.fl_str_mv |
andres.perez@udea.edu.co |
_version_ |
1812173125446533120 |
spelling |
Zapata Restrepo, Margarita MaríaArroyave Henao, OfeliaRamírez García, RenéPiedrahita Ochoa, Christian AlbertoRodas González, Juan DavidMaldonado Estrada, Juan Guillermo2017-08-31T19:01:28Z2017-08-31T19:01:28Z2010Zapata Restrepo MM, Arroyave Henao O, Ramírez García R, Piedrahita Ochoa CA, Rodas González JD, Maldonado Estrada JG. Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herds. Rev. Colomb. Cienc. Pecu. 2010;23(1):17-270120-0690http://hdl.handle.net/10495/80802256-2958ABSTRACT: The aim of this study was to establish the protocol of conventional and real time PCR for amplification of Mycobacterium avium subsp. paratuberculosis (MAP) genome from bovine fecal samples, as a way to define strategies for establishing a prevention and control program in a dairy herd at the Universidad de Antioquia (Medellín, Colombia). Fecal samples were individually taken of clinical healthy cows or cows with diarrhea bred in a herd enzootic for Johne’s disease, were processed them for culture in liquid Middlebrook 7H9 media supplemented with mycobactin under two different protocols: with or without inhibitors. Fecal samples from clinically healthy cows were used as negative control. Conventional and real time PCR were performed with MAP DNA obtained of fecal or cultured samples. The MAP- specific IS900 segment was amplified by using the respective forward and reverse primers. DNA isolated from a reference MAP strain was used as positive control of PCR. Data were analyzed by descriptive statistics and simple regression analysis between PCR and culture results were performed. All samples cultured in media with or without mycobactin gave a positive result compatible with MAP growth. However, only 13,3% of samples were positive by real time PCR. There was no relationship neither between PCR and culture results, nor between clinical condition of the cow and MAP positivity. These results support the need combine culture of feces with PCR diagnosis for identification of MAP-excreting cows in a dairy herd. Finally, a strategy of prevention and control of bovine paratuberculosis is proposed for this enzootic herd and for dairy herds in Colombia.RESUMEN: El objetivo de este trabajo fue establecer un sistema de detección y amplificación del Mycobacterium avium paratuberculosis (MAP) a partir de muestras de materia fecal bovina, mediante el uso de la técnica de PCR en tiempo real, como estrategia de apoyo para el establecimiento de un programa de prevención detección y control de la paratuberculosis bovina en el hato lechero de la Universidad de Antioquia. Muestras de materia fecal fueron tomadas de bovinos provenientes de un hato enzoótico para la enfermedad de Johne, fueron cultivadas en medio de cultivo líquido Middlebrook 7H9 suplementado con micobactina, bajo dos protocolos de aislamiento: con o sin inhibidores. Como control negativo fue utilizada muestras de materia fecal de bovinos clínicamente sanos. Adicionalmente, con el DNA de las muestras aisladas en cultivo y de las muestras de materia fecal, fueron hechas pruebas de PCR convencional y en tiempo real, para la amplificación del elemento de inserción IS900 del MAP, mediante el uso de cebadores específicos para este elemento. Como control positivo se utilizó DNA de MAP de una cepa de referencia. Los resultados fueron evaluados mediante estadística descriptiva y la comparación entre el resultado del cultivo y de la prueba de PCR fue evaluado mediante regresión simple. Los resultados del cultivo bacteriológico, mostraron un total de 15 muestras con crecimiento compatible con MAP, el cual fue verificado por prueba de PCR en el 13.3% de los casos. No hubo correlación entre el resultado de cultivo y la prueba de PCR ni entre el estado clínico y la positividad al MAP. Los resultados confirman la necesidad de combinar el diagnóstico molecular con el cultivo bacteriológico para identificar las vacas positivas en un hato. Finalmente, una estrategia de prevención y control de la enfermedad aplicable a este hato enzoótico y a los hatos lecheros en Colombia es discutida.COL0001262application/pdfengUniversidad de Antioquia, Facultad de Ciencias AgrariasCENTAUROMedellín, Colombiainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARTArtículo de investigaciónhttp://purl.org/coar/version/c_970fb48d4fbd8a85Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO)info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/co/http://purl.org/coar/access_right/c_abf2https://creativecommons.org/licenses/by-nc-sa/4.0/Identification of Mycobacterium avium subspecies paratuberculosis by PCR techniques and establishment of control programs for bovine paratuberculosis in dairy herdsIdentificación de mycobacterium avium subspecies paratuberculosis mediante pruebas de PCR y definición de programa de control de la paratuberculosis bovina en hatos lecherosRev. Colomb. Cienc. Pecu.Revista Colombiana de Ciencias Pecuarias1727231ORIGINALZapataMargarita_2010_IdentificationMycobacteriumAvium.pdfZapataMargarita_2010_IdentificationMycobacteriumAvium.pdfArtículo de investigaciónapplication/pdf326587http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/1/ZapataMargarita_2010_IdentificationMycobacteriumAvium.pdf16f1b0c54c5ba95af6c8090366100e4aMD51CC-LICENSElicense_urllicense_urltext/plain; charset=utf-849http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/2/license_url4afdbb8c545fd630ea7db775da747b2fMD52license_textlicense_texttext/html; charset=utf-80http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/3/license_textd41d8cd98f00b204e9800998ecf8427eMD53license_rdflicense_rdfapplication/rdf+xml; charset=utf-80http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/4/license_rdfd41d8cd98f00b204e9800998ecf8427eMD54LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://bibliotecadigital.udea.edu.co/bitstream/10495/8080/5/license.txt8a4605be74aa9ea9d79846c1fba20a33MD5510495/8080oai:bibliotecadigital.udea.edu.co:10495/80802021-05-21 20:28:50.019Repositorio Institucional Universidad de Antioquiaandres.perez@udea.edu.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 |