International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients
ABSTRACT: Background: A century after its discovery, Chagas disease still represents a major neglected tropical threat. Accurate diagnostics tools as well as surrogate markers of parasitological response to treatment are research priorities in the field. The purpose of this study was to evaluate the...
- Autores:
-
Schijman, Alejandro
Bisio, Margarita
Orellana, Liliana
Sued, Mariela
Duffy, Tomás
Mejía Jaramillo, Ana María
Cura, Carolina
Auter, Frederic
Veron, Vincent
Qvarnstrom, Yvonne
Deborggraeve, Stijn
Hijar, Gisely
Zulantay, Inés
Lucero, Raúl Horacio
Velázquez, Elsa
Tellez, Tatiana
Sánchez León, Zunilda
Galvão, Lucia
Nolder, Debbie
Monje Rumi, María
Levi, José
Ramírez, Juan
Zorrilla, Pilar
Flores, María
Jercic, Maria
Crisante, Gladys
Añez, Néstor
de Castro, Ana
González, Clara
Acosta Viana, Karla
Yachelini, Pedro
Torrico, Faustino
Robello, Carlos
Diosque, Patricio
Triana Chávez, Omar
Aznar, Christine
Russomando, Graciela
Büscher, Philippe
Assal, Azzedine
Guhl, Felipe
Sosa Estani, Sergio
DaSilva, Alexandre
Britto, Constança
Luquetti, Alejandro
Ladzins, Janis
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2011
- Institución:
- Universidad de Antioquia
- Repositorio:
- Repositorio UdeA
- Idioma:
- eng
- OAI Identifier:
- oai:bibliotecadigital.udea.edu.co:10495/23712
- Acceso en línea:
- http://hdl.handle.net/10495/23712
- Palabra clave:
- Enfermedad de chagas
Chagas Disease
Trypanosoma cruzi
Reacción en Cadena de la Polimerasa
Polymerase Chain Reaction
- Rights
- openAccess
- License
- http://creativecommons.org/licenses/by/2.5/co/
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|
dc.title.spa.fl_str_mv |
International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients |
title |
International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients |
spellingShingle |
International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients Enfermedad de chagas Chagas Disease Trypanosoma cruzi Reacción en Cadena de la Polimerasa Polymerase Chain Reaction |
title_short |
International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients |
title_full |
International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients |
title_fullStr |
International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients |
title_full_unstemmed |
International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients |
title_sort |
International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients |
dc.creator.fl_str_mv |
Schijman, Alejandro Bisio, Margarita Orellana, Liliana Sued, Mariela Duffy, Tomás Mejía Jaramillo, Ana María Cura, Carolina Auter, Frederic Veron, Vincent Qvarnstrom, Yvonne Deborggraeve, Stijn Hijar, Gisely Zulantay, Inés Lucero, Raúl Horacio Velázquez, Elsa Tellez, Tatiana Sánchez León, Zunilda Galvão, Lucia Nolder, Debbie Monje Rumi, María Levi, José Ramírez, Juan Zorrilla, Pilar Flores, María Jercic, Maria Crisante, Gladys Añez, Néstor de Castro, Ana González, Clara Acosta Viana, Karla Yachelini, Pedro Torrico, Faustino Robello, Carlos Diosque, Patricio Triana Chávez, Omar Aznar, Christine Russomando, Graciela Büscher, Philippe Assal, Azzedine Guhl, Felipe Sosa Estani, Sergio DaSilva, Alexandre Britto, Constança Luquetti, Alejandro Ladzins, Janis |
dc.contributor.author.none.fl_str_mv |
Schijman, Alejandro Bisio, Margarita Orellana, Liliana Sued, Mariela Duffy, Tomás Mejía Jaramillo, Ana María Cura, Carolina Auter, Frederic Veron, Vincent Qvarnstrom, Yvonne Deborggraeve, Stijn Hijar, Gisely Zulantay, Inés Lucero, Raúl Horacio Velázquez, Elsa Tellez, Tatiana Sánchez León, Zunilda Galvão, Lucia Nolder, Debbie Monje Rumi, María Levi, José Ramírez, Juan Zorrilla, Pilar Flores, María Jercic, Maria Crisante, Gladys Añez, Néstor de Castro, Ana González, Clara Acosta Viana, Karla Yachelini, Pedro Torrico, Faustino Robello, Carlos Diosque, Patricio Triana Chávez, Omar Aznar, Christine Russomando, Graciela Büscher, Philippe Assal, Azzedine Guhl, Felipe Sosa Estani, Sergio DaSilva, Alexandre Britto, Constança Luquetti, Alejandro Ladzins, Janis |
dc.subject.decs.none.fl_str_mv |
Enfermedad de chagas Chagas Disease Trypanosoma cruzi Reacción en Cadena de la Polimerasa Polymerase Chain Reaction |
topic |
Enfermedad de chagas Chagas Disease Trypanosoma cruzi Reacción en Cadena de la Polimerasa Polymerase Chain Reaction |
description |
ABSTRACT: Background: A century after its discovery, Chagas disease still represents a major neglected tropical threat. Accurate diagnostics tools as well as surrogate markers of parasitological response to treatment are research priorities in the field. The purpose of this study was to evaluate the performance of PCR methods in detection of Trypanosoma cruzi DNA by an external quality evaluation. Methodology/Findings: An international collaborative study was launched by expert PCR laboratories from 16 countries. Currently used strategies were challenged against serial dilutions of purified DNA from stocks representing T. cruzi discrete typing units (DTU) I, IV and VI (set A), human blood spiked with parasite cells (set B) and Guanidine Hidrochloride-EDTA blood samples from 32 seropositive and 10 seronegative patients from Southern Cone countries (set C). Forty eight PCR tests were reported for set A and 44 for sets B and C; 28 targeted minicircle DNA (kDNA), 13 satellite DNA (Sat-DNA) and the remainder low copy number sequences. In set A, commercial master mixes and Sat-DNA Real Time PCR showed better specificity, but kDNA-PCR was more sensitive to detect DTU I DNA. In set B, commercial DNA extraction kits presented better specificity than solvent extraction protocols. Sat-DNA PCR tests had higher specificity, with sensitivities of 0.05–0.5 parasites/ mL whereas specific kDNA tests detected 5.1023 par/mL. Sixteen specific and coherent methods had a Good Performance in both sets A and B (10 fg/ml of DNA from all stocks, 5 par/mL spiked blood). The median values of sensitivities, specificities and accuracies obtained in testing the Set C samples with the 16 tests determined to be good performing by analyzing Sets A and B samples varied considerably. Out of them, four methods depicted the best performing parameters in all three sets of samples, detecting at least 10 fg/ml for each DNA stock, 0.5 par/mL and a sensitivity between 83.3–94.4%, specificity of 85–95%, accuracy of 86.8–89.5% and kappa index of 0.7–0.8 compared to consensus PCR reports of the 16 good performing tests and 63–69%, 100%, 71.4–76.2% and 0.4–0.5, respectively compared to serodiagnosis. Method LbD2 used solvent extraction followed by Sybr-Green based Real time PCR targeted to Sat-DNA; method LbD3 used solvent DNA extraction followed by conventional PCR targeted to Sat-DNA. The third method (LbF1) used glass fiber column based DNA extraction followed by TaqMan Real Time PCR targeted to Sat-DNA (cruzi 1/cruzi 2 and cruzi 3 TaqMan probe) and the fourth method (LbQ) used solvent DNA extraction followed by conventional hot-start PCR targeted to kDNA (primer pairs 121/122). These four methods were further evaluated at the coordinating laboratory in a subset of human blood samples, confirming the performance obtained by the participating laboratories. Conclusion/Significance: This study represents a first crucial step towards international validation of PCR procedures for detection of T. cruzi in human blood samples. |
publishDate |
2011 |
dc.date.issued.none.fl_str_mv |
2011 |
dc.date.accessioned.none.fl_str_mv |
2021-11-02T22:42:12Z |
dc.date.available.none.fl_str_mv |
2021-11-02T22:42:12Z |
dc.type.spa.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
dc.type.hasversion.spa.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_2df8fbb1 |
dc.type.redcol.spa.fl_str_mv |
https://purl.org/redcol/resource_type/ART |
dc.type.local.spa.fl_str_mv |
Artículo de investigación |
format |
http://purl.org/coar/resource_type/c_2df8fbb1 |
status_str |
publishedVersion |
dc.identifier.citation.spa.fl_str_mv |
Schijman AG, Bisio M, Orellana L, Sued M, Duffy T, et al. (2011) International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients. PLoS Negl Trop Dis 5(1): e931. doi:10.1371/journal.pntd.0000931 |
dc.identifier.issn.none.fl_str_mv |
1553-7390 |
dc.identifier.uri.none.fl_str_mv |
http://hdl.handle.net/10495/23712 |
dc.identifier.doi.none.fl_str_mv |
10.1371/journal.pntd.0000931 |
dc.identifier.eissn.none.fl_str_mv |
1553-7404 |
identifier_str_mv |
Schijman AG, Bisio M, Orellana L, Sued M, Duffy T, et al. (2011) International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients. PLoS Negl Trop Dis 5(1): e931. doi:10.1371/journal.pntd.0000931 1553-7390 10.1371/journal.pntd.0000931 1553-7404 |
url |
http://hdl.handle.net/10495/23712 |
dc.language.iso.spa.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartofjournalabbrev.spa.fl_str_mv |
PLoS Negl. Trop. Dis. |
dc.rights.spa.fl_str_mv |
info:eu-repo/semantics/openAccess |
dc.rights.uri.*.fl_str_mv |
http://creativecommons.org/licenses/by/2.5/co/ |
dc.rights.accessrights.spa.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
dc.rights.creativecommons.spa.fl_str_mv |
https://creativecommons.org/licenses/by/4.0/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
http://creativecommons.org/licenses/by/2.5/co/ http://purl.org/coar/access_right/c_abf2 https://creativecommons.org/licenses/by/4.0/ |
dc.format.extent.spa.fl_str_mv |
13 |
dc.format.mimetype.spa.fl_str_mv |
application/pdf |
dc.publisher.spa.fl_str_mv |
Public Library of Science |
dc.publisher.group.spa.fl_str_mv |
Genética Molecular (GENMOL) |
dc.publisher.place.spa.fl_str_mv |
San Francisco, Estados Unidos |
institution |
Universidad de Antioquia |
bitstream.url.fl_str_mv |
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Repositorio Institucional Universidad de Antioquia |
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andres.perez@udea.edu.co |
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Schijman, AlejandroBisio, MargaritaOrellana, LilianaSued, MarielaDuffy, TomásMejía Jaramillo, Ana MaríaCura, CarolinaAuter, FredericVeron, VincentQvarnstrom, YvonneDeborggraeve, StijnHijar, GiselyZulantay, InésLucero, Raúl HoracioVelázquez, ElsaTellez, TatianaSánchez León, ZunildaGalvão, LuciaNolder, DebbieMonje Rumi, MaríaLevi, JoséRamírez, JuanZorrilla, PilarFlores, MaríaJercic, MariaCrisante, GladysAñez, Néstorde Castro, AnaGonzález, ClaraAcosta Viana, KarlaYachelini, PedroTorrico, FaustinoRobello, CarlosDiosque, PatricioTriana Chávez, OmarAznar, ChristineRussomando, GracielaBüscher, PhilippeAssal, AzzedineGuhl, FelipeSosa Estani, SergioDaSilva, AlexandreBritto, ConstançaLuquetti, AlejandroLadzins, Janis2021-11-02T22:42:12Z2021-11-02T22:42:12Z2011Schijman AG, Bisio M, Orellana L, Sued M, Duffy T, et al. (2011) International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients. PLoS Negl Trop Dis 5(1): e931. doi:10.1371/journal.pntd.00009311553-7390http://hdl.handle.net/10495/2371210.1371/journal.pntd.00009311553-7404ABSTRACT: Background: A century after its discovery, Chagas disease still represents a major neglected tropical threat. Accurate diagnostics tools as well as surrogate markers of parasitological response to treatment are research priorities in the field. The purpose of this study was to evaluate the performance of PCR methods in detection of Trypanosoma cruzi DNA by an external quality evaluation. Methodology/Findings: An international collaborative study was launched by expert PCR laboratories from 16 countries. Currently used strategies were challenged against serial dilutions of purified DNA from stocks representing T. cruzi discrete typing units (DTU) I, IV and VI (set A), human blood spiked with parasite cells (set B) and Guanidine Hidrochloride-EDTA blood samples from 32 seropositive and 10 seronegative patients from Southern Cone countries (set C). Forty eight PCR tests were reported for set A and 44 for sets B and C; 28 targeted minicircle DNA (kDNA), 13 satellite DNA (Sat-DNA) and the remainder low copy number sequences. In set A, commercial master mixes and Sat-DNA Real Time PCR showed better specificity, but kDNA-PCR was more sensitive to detect DTU I DNA. In set B, commercial DNA extraction kits presented better specificity than solvent extraction protocols. Sat-DNA PCR tests had higher specificity, with sensitivities of 0.05–0.5 parasites/ mL whereas specific kDNA tests detected 5.1023 par/mL. Sixteen specific and coherent methods had a Good Performance in both sets A and B (10 fg/ml of DNA from all stocks, 5 par/mL spiked blood). The median values of sensitivities, specificities and accuracies obtained in testing the Set C samples with the 16 tests determined to be good performing by analyzing Sets A and B samples varied considerably. Out of them, four methods depicted the best performing parameters in all three sets of samples, detecting at least 10 fg/ml for each DNA stock, 0.5 par/mL and a sensitivity between 83.3–94.4%, specificity of 85–95%, accuracy of 86.8–89.5% and kappa index of 0.7–0.8 compared to consensus PCR reports of the 16 good performing tests and 63–69%, 100%, 71.4–76.2% and 0.4–0.5, respectively compared to serodiagnosis. Method LbD2 used solvent extraction followed by Sybr-Green based Real time PCR targeted to Sat-DNA; method LbD3 used solvent DNA extraction followed by conventional PCR targeted to Sat-DNA. The third method (LbF1) used glass fiber column based DNA extraction followed by TaqMan Real Time PCR targeted to Sat-DNA (cruzi 1/cruzi 2 and cruzi 3 TaqMan probe) and the fourth method (LbQ) used solvent DNA extraction followed by conventional hot-start PCR targeted to kDNA (primer pairs 121/122). These four methods were further evaluated at the coordinating laboratory in a subset of human blood samples, confirming the performance obtained by the participating laboratories. Conclusion/Significance: This study represents a first crucial step towards international validation of PCR procedures for detection of T. cruzi in human blood samples.COL000672313application/pdfengPublic Library of ScienceGenética Molecular (GENMOL)San Francisco, Estados Unidosinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARTArtículo de investigaciónhttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by/2.5/co/http://purl.org/coar/access_right/c_abf2https://creativecommons.org/licenses/by/4.0/International Study to Evaluate PCR Methods for Detection of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease PatientsEnfermedad de chagasChagas DiseaseTrypanosoma cruziReacción en Cadena de la PolimerasaPolymerase Chain ReactionPLoS Negl. Trop. Dis.PLoS Neglected Tropical Diseases11351ORIGINALJaramilloAna_2011_StudyDetectionTrypanosoma.pdfJaramilloAna_2011_StudyDetectionTrypanosoma.pdfArtículo de investigaciónapplication/pdf885168http://bibliotecadigital.udea.edu.co/bitstream/10495/23712/1/JaramilloAna_2011_StudyDetectionTrypanosoma.pdf899a7d486740a706f8e5aaeb05fb7dc4MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8927http://bibliotecadigital.udea.edu.co/bitstream/10495/23712/2/license_rdf1646d1f6b96dbbbc38035efc9239ac9cMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://bibliotecadigital.udea.edu.co/bitstream/10495/23712/3/license.txt8a4605be74aa9ea9d79846c1fba20a33MD5310495/23712oai:bibliotecadigital.udea.edu.co:10495/237122021-11-02 17:42:13.027Repositorio Institucional Universidad de Antioquiaandres.perez@udea.edu.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 |