Estimation and comparison of conventional and genomic breeding values in Holstein cattle of Antioquia, Colombia

Autores:
Zambrano A, Juan
Rincón F, Juan
López H, Albeiro
Echeverri Z, Julián
Tipo de recurso:
Article of journal
Fecha de publicación:
2015
Institución:
Universidad de Córdoba
Repositorio:
Repositorio Institucional Unicórdoba
Idioma:
spa
OAI Identifier:
oai:repositorio.unicordoba.edu.co:ucordoba/5256
Acceso en línea:
https://repositorio.unicordoba.edu.co/handle/ucordoba/5256
https://doi.org/10.21897/rmvz.44
Palabra clave:
BLUP
genotypes
genomic selection
single nucleotide polymorphism.
Rights
openAccess
License
https://creativecommons.org/licenses/by-nc-sa/4.0/
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network_acronym_str UCORDOBA2
network_name_str Repositorio Institucional Unicórdoba
repository_id_str
dc.title.spa.fl_str_mv Estimation and comparison of conventional and genomic breeding values in Holstein cattle of Antioquia, Colombia
dc.title.translated.eng.fl_str_mv Estimation and comparison of conventional and genomic breeding values in Holstein cattle of Antioquia, Colombia
title Estimation and comparison of conventional and genomic breeding values in Holstein cattle of Antioquia, Colombia
spellingShingle Estimation and comparison of conventional and genomic breeding values in Holstein cattle of Antioquia, Colombia
BLUP
genotypes
genomic selection
single nucleotide polymorphism.
title_short Estimation and comparison of conventional and genomic breeding values in Holstein cattle of Antioquia, Colombia
title_full Estimation and comparison of conventional and genomic breeding values in Holstein cattle of Antioquia, Colombia
title_fullStr Estimation and comparison of conventional and genomic breeding values in Holstein cattle of Antioquia, Colombia
title_full_unstemmed Estimation and comparison of conventional and genomic breeding values in Holstein cattle of Antioquia, Colombia
title_sort Estimation and comparison of conventional and genomic breeding values in Holstein cattle of Antioquia, Colombia
dc.creator.fl_str_mv Zambrano A, Juan
Rincón F, Juan
López H, Albeiro
Echeverri Z, Julián
dc.contributor.author.spa.fl_str_mv Zambrano A, Juan
Rincón F, Juan
López H, Albeiro
Echeverri Z, Julián
dc.subject.spa.fl_str_mv BLUP
genotypes
genomic selection
single nucleotide polymorphism.
topic BLUP
genotypes
genomic selection
single nucleotide polymorphism.
publishDate 2015
dc.date.accessioned.none.fl_str_mv 2015-09-25 00:00:00
2022-06-17T20:08:07Z
dc.date.available.none.fl_str_mv 2015-09-25 00:00:00
2022-06-17T20:08:07Z
dc.date.issued.none.fl_str_mv 2015-09-25
dc.type.spa.fl_str_mv Artículo de revista
dc.type.eng.fl_str_mv Journal article
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dc.identifier.doi.none.fl_str_mv 10.21897/rmvz.44
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dc.identifier.eissn.none.fl_str_mv 1909-0544
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1909-0544
url https://repositorio.unicordoba.edu.co/handle/ucordoba/5256
https://doi.org/10.21897/rmvz.44
dc.language.iso.spa.fl_str_mv spa
language spa
dc.relation.references.spa.fl_str_mv Henderson CR. Applications of linear models in animal breeding. Guelph: CGIL Publications; 1984.
Fisher R. The correlation between relatives on the supposition of mendelian inheritance. Transactions of the Royal Society of Edinburgh 1918; 52:399-433. http://dx.doi.org/10.1017/S0080456800012163
Cole JB, VanRaden PM, O'Connell JRO, Van Tassell CP, Sonstegard TS, Schnabel RD et al. Distribution and location of genetic effect for dairy traits. J Dairy Sci 2009; 92(6):2931-2946. http://dx.doi.org/10.3168/jds.2008-1762
Kahi AK, Rewe TO, Kosgey IS. Sustainable community-based organizations for the genetic improvement of livestock in developing countries. Outlook Agric 2005; 34(4):261-270. http://dx.doi.org/10.5367/000000005775454706
Godard ME, Hayes BJ. Genomic Selection. J Anim Breed Genet 2007; 124(6):323-330. http://dx.doi.org/10.1111/j.1439-0388.2007.00702.x
Meuwissen THE, Hayes B, Goddard M. Prediction of total genetic value using genome-wide dense marker maps. Genetics 2001; 157(4):1819–1829.
Dekkers JC. Commercial application of marker and gene assisted selection in livestock: strategies and lessons. J Anim Sci 2004; 82(E-Suppl):E313-328.
Hayes BJ, Bowman PJ, Chamberlain AC, Goddard ME. Genomic selection in dairy cattle: progress and challenges. J Dairy Sci 2009; 92(2):433–443. http://dx.doi.org/10.3168/jds.2008-1646
Schefers J, Wigel KA. Genomic selection in dairy cattle: Integration of DNA testing into breeding programs. Anim Front 2012; 12(1):4-9. http://dx.doi.org/10.2527/af.2011-0032
Calus MPL. Genomic breeding value prediction: methods and procedures. Animal 2010; 4(2):157-164. http://dx.doi.org/10.1017/S1751731109991352
Moser G, Tier B, Crump RE, Khatkar MS, Raadsma HW. A comparison of five methods to predict genomic breeding values of dairy bulls from genome-wide SNP markers. Genet Sel Evol 2009; 41:56. http://dx.doi.org/10.1186/1297-9686-41-56
Meuwissen T, Hayes B, Goddard M. Accelerating Improvement of livestock with Genomic Selection. Annu Rev Anim Biosci 2013; 1:221-237. http://dx.doi.org/10.1146/annurev-animal-031412-103705
VanRaden PM, Van Tassell CP, Wiggans GR, Sonstegard TS, Schnabel RD, Taylor JF, Schenkel FS. Invited review: Reliability of genomic predictions for North American Holstein bulls. J Dairy Sci 2009; 92 (1):16-24. http://dx.doi.org/10.3168/jds.2008-1514
Duchemin SI, Colombani C, Legarra A, Baloche G, Larroque H, Astruc JM et al. Genomic selection in the French Lacaune dairy sheep breed. J Dairy Sci 2012; 95(5):2723-2733. http://dx.doi.org/10.3168/jds.2011-4980
Echeverri J, Zambrano JC, López-Herrera A. Genomic evaluation of Holstein Cattle in Antioquia (Colombia): a case study. Rev Colomb Cienc Pecu 2014; 27:306-314.
Ali AK, Shook GE. An Optimun transformation for somatic cell concentration in milk. J Dairy Sci 1980; 63(3): 487-490. http://dx.doi.org/10.3168/jds.S0022-0302(80)82959-6
Echeverri J, López A, Parra J. Software control 1. [CD-ROM]. Versión 1. Medellín: Universidad Nacional de Colombia sede Medellín; 2010.
SAS. Statistical Analysis Systems [CD-ROM]. Versión 9.1 Cary, NC, USA: SAS Inst, Inc; 2006.
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira M, Bender D et al. PLINK: a toolset for whole-genome association and population-based linkage analysis. Am J Hum Genet 2007; 81(3):559-575. http://dx.doi.org/10.1086/519795
Mrode RA, Thompson R. Linear models for the prediction of animal breeding values. Cambridge: CABI Publishing; 2005. http://dx.doi.org/10.1079/9780851990002.0000
Boldman K, Kriese L, Van Vleck L, Van Tassell C, Kachman S. MTDFREML: A Set of programs to obtain estimates of variances and covariances. [Programa de computadora]. Clay Center (NE): USDA-ARS; 1995.
Kizilkaya k, Fernando RL, Garrick DJ. Genomic Prediction of simulated multibreed and purebred performance using observed fifty thousand single nucleotide polymorphism genotypes. J Anim Sci 2010; 88(2):544-551. http://dx.doi.org/10.2527/jas.2009-2064
Verbyla KL, Bowman PJ, Hayes BJ, Raadsma H, Goddard ME. Sensitivity of genomic selection to using different prior distributions. BMC Proc 2010; 4(1):S5. http://dx.doi.org/10.1186/1753-6561-4-S1-S5
Legarra A, Ricard A, Filangi O. GS3: Genomic selection, Gibbs sampling, Gauss Seidel and Bayes Cpi. [Programa de computadora] Toulouse: Inra; 2013.
Mäntysaari E, Zengting L, Van Raden P. Interbull Valdation Test for Genomics Evaluations. Interbull Bolletin 2010; 41:17-22.
Lillehammer L, Meuwissen THE, Sonesson AK. A comparison of dairy cattle breeding designs that use genomic selection. J Dairy Sci 2010; 94:493-500. http://dx.doi.org/10.3168/jds.2010-3518
Calus MPL, Veerkamp RF. Accuracy of breeding values when using and ignoring the polygenic effect in genomic breeding value estimation with a marker density of one SNP per cM. J Anim Breed Genet 2007; 124:362–368. http://dx.doi.org/10.1111/j.1439-0388.2007.00691.x
Muir WM. Comparison of genomic and traditional BLUP estimated breeding value accuracy and selection response under alternative trait and genomic parameters. J Anim Breed Genet 2007; 124:342–355. http://dx.doi.org/10.1111/j.1439-0388.2007.00700.x
Visscher PM, Yang J, Goddard MEA. A commentary on "common SNPs explain a large proportion of the heritability for human height" by Yang et al. (2010). Twin Res Hum Genet 2012; 13:517–524. http://dx.doi.org/10.1375/twin.13.6.517
Legarra A, Robert-Granié C, Croiseau P, Guillaume F, Fritz S. Improved Lasso for genomic selection. Genet Res Camb 2011; 93(1):77-87. http://dx.doi.org/10.1017/S0016672310000534
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dc.relation.citationedition.spa.fl_str_mv Núm. 3 , Año 2015 : Revista MVZ Córdoba Volumen 20(3) Septiembre-Diciembre 2015
dc.relation.citationendpage.none.fl_str_mv 4753
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dc.relation.citationstartpage.none.fl_str_mv 4739
dc.relation.citationvolume.spa.fl_str_mv 20
dc.relation.ispartofjournal.spa.fl_str_mv Revista MVZ Córdoba
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spelling Zambrano A, Juan5955cce2-fc2f-47d5-a9b2-140c12ffac6d-1Rincón F, Juanf13a73bf-fcc5-4222-b0c5-da6116cc51e6-1López H, Albeirobab4af92-d594-4c35-a698-8d5388077bd8-1Echeverri Z, Julián12623fbf-78be-4bfd-8bcc-3828a9580cdd-12015-09-25 00:00:002022-06-17T20:08:07Z2015-09-25 00:00:002022-06-17T20:08:07Z2015-09-250122-0268https://repositorio.unicordoba.edu.co/handle/ucordoba/525610.21897/rmvz.44https://doi.org/10.21897/rmvz.441909-0544application/pdftext/htmlspaUniversidad de Córdobahttps://creativecommons.org/licenses/by-nc-sa/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2https://revistamvz.unicordoba.edu.co/article/view/44BLUPgenotypesgenomic selectionsingle nucleotide polymorphism.Estimation and comparison of conventional and genomic breeding values in Holstein cattle of Antioquia, ColombiaEstimation and comparison of conventional and genomic breeding values in Holstein cattle of Antioquia, ColombiaArtículo de revistaJournal articleinfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1info:eu-repo/semantics/publishedVersionTexthttp://purl.org/redcol/resource_type/ARTREFhttp://purl.org/coar/version/c_970fb48d4fbd8a85Henderson CR. Applications of linear models in animal breeding. Guelph: CGIL Publications; 1984.Fisher R. The correlation between relatives on the supposition of mendelian inheritance. Transactions of the Royal Society of Edinburgh 1918; 52:399-433. http://dx.doi.org/10.1017/S0080456800012163Cole JB, VanRaden PM, O'Connell JRO, Van Tassell CP, Sonstegard TS, Schnabel RD et al. Distribution and location of genetic effect for dairy traits. J Dairy Sci 2009; 92(6):2931-2946. http://dx.doi.org/10.3168/jds.2008-1762Kahi AK, Rewe TO, Kosgey IS. Sustainable community-based organizations for the genetic improvement of livestock in developing countries. Outlook Agric 2005; 34(4):261-270. http://dx.doi.org/10.5367/000000005775454706Godard ME, Hayes BJ. Genomic Selection. J Anim Breed Genet 2007; 124(6):323-330. http://dx.doi.org/10.1111/j.1439-0388.2007.00702.xMeuwissen THE, Hayes B, Goddard M. Prediction of total genetic value using genome-wide dense marker maps. Genetics 2001; 157(4):1819–1829.Dekkers JC. Commercial application of marker and gene assisted selection in livestock: strategies and lessons. J Anim Sci 2004; 82(E-Suppl):E313-328.Hayes BJ, Bowman PJ, Chamberlain AC, Goddard ME. Genomic selection in dairy cattle: progress and challenges. J Dairy Sci 2009; 92(2):433–443. http://dx.doi.org/10.3168/jds.2008-1646Schefers J, Wigel KA. Genomic selection in dairy cattle: Integration of DNA testing into breeding programs. Anim Front 2012; 12(1):4-9. http://dx.doi.org/10.2527/af.2011-0032Calus MPL. Genomic breeding value prediction: methods and procedures. Animal 2010; 4(2):157-164. http://dx.doi.org/10.1017/S1751731109991352Moser G, Tier B, Crump RE, Khatkar MS, Raadsma HW. A comparison of five methods to predict genomic breeding values of dairy bulls from genome-wide SNP markers. Genet Sel Evol 2009; 41:56. http://dx.doi.org/10.1186/1297-9686-41-56Meuwissen T, Hayes B, Goddard M. Accelerating Improvement of livestock with Genomic Selection. Annu Rev Anim Biosci 2013; 1:221-237. http://dx.doi.org/10.1146/annurev-animal-031412-103705VanRaden PM, Van Tassell CP, Wiggans GR, Sonstegard TS, Schnabel RD, Taylor JF, Schenkel FS. Invited review: Reliability of genomic predictions for North American Holstein bulls. J Dairy Sci 2009; 92 (1):16-24. http://dx.doi.org/10.3168/jds.2008-1514Duchemin SI, Colombani C, Legarra A, Baloche G, Larroque H, Astruc JM et al. Genomic selection in the French Lacaune dairy sheep breed. J Dairy Sci 2012; 95(5):2723-2733. http://dx.doi.org/10.3168/jds.2011-4980Echeverri J, Zambrano JC, López-Herrera A. Genomic evaluation of Holstein Cattle in Antioquia (Colombia): a case study. Rev Colomb Cienc Pecu 2014; 27:306-314.Ali AK, Shook GE. An Optimun transformation for somatic cell concentration in milk. J Dairy Sci 1980; 63(3): 487-490. http://dx.doi.org/10.3168/jds.S0022-0302(80)82959-6Echeverri J, López A, Parra J. Software control 1. [CD-ROM]. Versión 1. Medellín: Universidad Nacional de Colombia sede Medellín; 2010.SAS. Statistical Analysis Systems [CD-ROM]. Versión 9.1 Cary, NC, USA: SAS Inst, Inc; 2006.Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira M, Bender D et al. PLINK: a toolset for whole-genome association and population-based linkage analysis. Am J Hum Genet 2007; 81(3):559-575. http://dx.doi.org/10.1086/519795Mrode RA, Thompson R. Linear models for the prediction of animal breeding values. Cambridge: CABI Publishing; 2005. http://dx.doi.org/10.1079/9780851990002.0000Boldman K, Kriese L, Van Vleck L, Van Tassell C, Kachman S. MTDFREML: A Set of programs to obtain estimates of variances and covariances. [Programa de computadora]. Clay Center (NE): USDA-ARS; 1995.Kizilkaya k, Fernando RL, Garrick DJ. Genomic Prediction of simulated multibreed and purebred performance using observed fifty thousand single nucleotide polymorphism genotypes. J Anim Sci 2010; 88(2):544-551. http://dx.doi.org/10.2527/jas.2009-2064Verbyla KL, Bowman PJ, Hayes BJ, Raadsma H, Goddard ME. Sensitivity of genomic selection to using different prior distributions. BMC Proc 2010; 4(1):S5. http://dx.doi.org/10.1186/1753-6561-4-S1-S5Legarra A, Ricard A, Filangi O. GS3: Genomic selection, Gibbs sampling, Gauss Seidel and Bayes Cpi. [Programa de computadora] Toulouse: Inra; 2013.Mäntysaari E, Zengting L, Van Raden P. Interbull Valdation Test for Genomics Evaluations. Interbull Bolletin 2010; 41:17-22.Lillehammer L, Meuwissen THE, Sonesson AK. A comparison of dairy cattle breeding designs that use genomic selection. J Dairy Sci 2010; 94:493-500. http://dx.doi.org/10.3168/jds.2010-3518Calus MPL, Veerkamp RF. Accuracy of breeding values when using and ignoring the polygenic effect in genomic breeding value estimation with a marker density of one SNP per cM. J Anim Breed Genet 2007; 124:362–368. http://dx.doi.org/10.1111/j.1439-0388.2007.00691.xMuir WM. Comparison of genomic and traditional BLUP estimated breeding value accuracy and selection response under alternative trait and genomic parameters. J Anim Breed Genet 2007; 124:342–355. http://dx.doi.org/10.1111/j.1439-0388.2007.00700.xVisscher PM, Yang J, Goddard MEA. A commentary on "common SNPs explain a large proportion of the heritability for human height" by Yang et al. (2010). Twin Res Hum Genet 2012; 13:517–524. http://dx.doi.org/10.1375/twin.13.6.517Legarra A, Robert-Granié C, Croiseau P, Guillaume F, Fritz S. Improved Lasso for genomic selection. Genet Res Camb 2011; 93(1):77-87. http://dx.doi.org/10.1017/S0016672310000534https://revistamvz.unicordoba.edu.co/article/download/44/89https://revistamvz.unicordoba.edu.co/article/download/44/90Núm. 3 , Año 2015 : Revista MVZ Córdoba Volumen 20(3) Septiembre-Diciembre 201547533473920Revista MVZ CórdobaPublicationOREORE.xmltext/xml2698https://repositorio.unicordoba.edu.co/bitstreams/cb85188e-cce0-4e50-a34c-ee0f2d04850f/download80712c48646f7bc397f30363e880f249MD51ucordoba/5256oai:repositorio.unicordoba.edu.co:ucordoba/52562023-10-06 00:45:43.96https://creativecommons.org/licenses/by-nc-sa/4.0/metadata.onlyhttps://repositorio.unicordoba.edu.coRepositorio Universidad de Córdobabdigital@metabiblioteca.com

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