Prevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia
Digital
- Autores:
-
Martínez Gutiérrez, Marlen
Arcila Quiceno, Victor
Trejos Suárez, Juanita
Ruiz Saenz, Julian
- Tipo de recurso:
- Article of journal
- Fecha de publicación:
- 2019
- Institución:
- Universidad de Santander
- Repositorio:
- Repositorio Universidad de Santander
- Idioma:
- eng
- OAI Identifier:
- oai:repositorio.udes.edu.co:001/5659
- Acceso en línea:
- https://repositorio.udes.edu.co/handle/001/5659
- Palabra clave:
- Acute diarrhoea
Colombia
Molecular characterization
Post-vaccination
Rotavirus
- Rights
- openAccess
- License
- The Editor(s) and the Author(s), 2019
| id |
RUDES2_aabd0d91dcf74930a447a0f423ef04b6 |
|---|---|
| oai_identifier_str |
oai:repositorio.udes.edu.co:001/5659 |
| network_acronym_str |
RUDES2 |
| network_name_str |
Repositorio Universidad de Santander |
| repository_id_str |
|
| dc.title.spa.fl_str_mv |
Prevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia |
| title |
Prevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia |
| spellingShingle |
Prevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia Acute diarrhoea Colombia Molecular characterization Post-vaccination Rotavirus |
| title_short |
Prevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia |
| title_full |
Prevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia |
| title_fullStr |
Prevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia |
| title_full_unstemmed |
Prevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia |
| title_sort |
Prevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia |
| dc.creator.fl_str_mv |
Martínez Gutiérrez, Marlen Arcila Quiceno, Victor Trejos Suárez, Juanita Ruiz Saenz, Julian |
| dc.contributor.author.none.fl_str_mv |
Martínez Gutiérrez, Marlen Arcila Quiceno, Victor Trejos Suárez, Juanita Ruiz Saenz, Julian |
| dc.contributor.researchgroup.spa.fl_str_mv |
CLINIUDES |
| dc.subject.proposal.eng.fl_str_mv |
Acute diarrhoea Colombia Molecular characterization Post-vaccination Rotavirus |
| topic |
Acute diarrhoea Colombia Molecular characterization Post-vaccination Rotavirus |
| description |
Digital |
| publishDate |
2019 |
| dc.date.issued.none.fl_str_mv |
2019-06-01 |
| dc.date.accessioned.none.fl_str_mv |
2021-10-05T21:21:20Z |
| dc.date.available.none.fl_str_mv |
2021-10-05T21:21:20Z |
| dc.type.spa.fl_str_mv |
Artículo de revista |
| dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_2df8fbb1 |
| dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
| dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_6501 |
| dc.type.content.spa.fl_str_mv |
Text |
| dc.type.driver.spa.fl_str_mv |
info:eu-repo/semantics/article |
| dc.type.redcol.spa.fl_str_mv |
http://purl.org/redcol/resource_type/ART |
| dc.type.version.spa.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| format |
http://purl.org/coar/resource_type/c_6501 |
| status_str |
publishedVersion |
| dc.identifier.doi.none.fl_str_mv |
10.1590/S1678-9946201961034. |
| dc.identifier.uri.none.fl_str_mv |
https://repositorio.udes.edu.co/handle/001/5659 |
| identifier_str_mv |
10.1590/S1678-9946201961034. |
| url |
https://repositorio.udes.edu.co/handle/001/5659 |
| dc.language.iso.spa.fl_str_mv |
eng |
| language |
eng |
| dc.relation.citationendpage.spa.fl_str_mv |
10 |
| dc.relation.citationissue.spa.fl_str_mv |
34, julio 2019. |
| dc.relation.citationstartpage.spa.fl_str_mv |
1 |
| dc.relation.citationvolume.spa.fl_str_mv |
61 |
| dc.relation.cites.none.fl_str_mv |
Martinez-Gutierrez M, Arcila-Quiceno V, Trejos-Suarez J, Ruiz-Saenz J. Prevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia. Rev Inst Med Trop Sao Paulo. 2019 Jul 1;61:e34. doi: 10.1590/S1678-9946201961034. PMID: 31269110; PMCID: PMC6609135. |
| dc.relation.indexed.spa.fl_str_mv |
Rev Inst Med Trop Sao Paulo . 2019 Jul 1;61:e34. doi: 10.1590/S1678-9946201961034. |
| dc.relation.ispartofjournal.spa.fl_str_mv |
Revista do Instituto de Medicina Tropical de Sao Paulo |
| dc.rights.spa.fl_str_mv |
The Editor(s) and the Author(s), 2019 |
| dc.rights.coar.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
| dc.rights.accessrights.spa.fl_str_mv |
info:eu-repo/semantics/openAccess |
| dc.rights.creativecommons.spa.fl_str_mv |
Atribución-NoComercial 4.0 Internacional (CC BY-NC 4.0) |
| dc.rights.uri.spa.fl_str_mv |
https://creativecommons.org/licenses/by-nc/4.0/ |
| rights_invalid_str_mv |
The Editor(s) and the Author(s), 2019 Atribución-NoComercial 4.0 Internacional (CC BY-NC 4.0) https://creativecommons.org/licenses/by-nc/4.0/ http://purl.org/coar/access_right/c_abf2 |
| eu_rights_str_mv |
openAccess |
| dc.format.extent.spa.fl_str_mv |
1 p |
| dc.format.mimetype.spa.fl_str_mv |
application/pdf |
| dc.publisher.spa.fl_str_mv |
Revista do Instituto de Medicina Tropical de Sao Paulo |
| dc.publisher.place.spa.fl_str_mv |
Sao Paulo, Brasil |
| dc.source.spa.fl_str_mv |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6609135/pdf/1678-9946-rimtsp-61-S1678-9946201961034.pdf |
| institution |
Universidad de Santander |
| bitstream.url.fl_str_mv |
https://repositorio.udes.edu.co/bitstreams/aac30516-840c-44bd-b381-18033ee1a832/download https://repositorio.udes.edu.co/bitstreams/f1ca88cd-e111-4e84-b219-9c4d2acf54a3/download https://repositorio.udes.edu.co/bitstreams/5bac231c-6803-4123-af04-8414f8915e0e/download https://repositorio.udes.edu.co/bitstreams/8d9983dd-b7a2-4705-ac8b-be317aee0bbc/download |
| bitstream.checksum.fl_str_mv |
aa23235679295ddc73a2306087669cc9 38d94cf55aa1bf2dac1a736ac45c881c 5dbe86c1111d64f45ba435df98fdc825 f15625492262fd7be7c13824fa8c3ae4 |
| bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 |
| repository.name.fl_str_mv |
Repositorio Universidad de Santander |
| repository.mail.fl_str_mv |
soporte@metabiblioteca.com |
| _version_ |
1814158747878031360 |
| spelling |
Martínez Gutiérrez, Marlen92bafe7d-5768-4f16-a861-1d5a7486c5bc-1Arcila Quiceno, Victor3515643b-bc36-4b76-bec8-7439dd2d4b77-1Trejos Suárez, Juanitad1ff80c8-4661-4ad3-8cc1-ac4b0fe1abe3-1Ruiz Saenz, Julian827f4fa2-52e4-40a5-b081-9e1d95950338-1CLINIUDES2021-10-05T21:21:20Z2021-10-05T21:21:20Z2019-06-01DigitalAfter the introduction of the rotavirus vaccine, the number of rotavirus-associated deaths and the predicted annual rotavirus detection rate had slightly declined worldwide. Taking in account that in Colombia, Rotarix vaccine was introduced in 2009, the purpose of this study was to evaluate the presence of rotavirus A in children under five years who were treated for acute diarrhoea in Bucaramanga, Colombia and, moreover, to determine the genotypes of rotavirus present in those children. We performed an analytical cross-sectional study of rotavirus A in faecal samples from children up to five years of age. Stool samples were screened for rotavirus A using a lateral-flow immunochromatographic assay and confirmed using a VP6 sandwich ELISA. Genotyping of rotavirus A-positive samples was performed by PCR and sequencing of VP7 and VP4 genes. The overall prevalence of rotavirus was 30.53% (95% confidence interval [CI] 21.2 - 39.7). Most of the children with rotavirus (86.2%) had received two doses of the rotavirus vaccine. G3 strains accounted for the vast majority of cases (82.8%), followed by G12 strains (13.8%) and G3/G9 coinfections (3.4%). Among the P genotypes, P[8] was the most prevalent (69%), followed by P[9] (31%). The most common G[P] genotype combination was G3P[8], followed by G3P[9]. The main finding in this study was that rotavirus, in a Colombian region, is still an important pathogen in children under five years old, previously vaccinated. The results showed that different factors, such as kindergarten attendance, could explain the epidemiology and transmission of rotavirus in Bucaramanga.Ciencias básicas biomédicas, epidemiología, salud pública, enfermedades infecciosas, enfermedades no transmisibles epidemiología, salud y desarrollo, discapacidad1 papplication/pdf10.1590/S1678-9946201961034.https://repositorio.udes.edu.co/handle/001/5659engRevista do Instituto de Medicina Tropical de Sao PauloSao Paulo, Brasil1034, julio 2019.161Martinez-Gutierrez M, Arcila-Quiceno V, Trejos-Suarez J, Ruiz-Saenz J. Prevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia. Rev Inst Med Trop Sao Paulo. 2019 Jul 1;61:e34. doi: 10.1590/S1678-9946201961034. PMID: 31269110; PMCID: PMC6609135.Rev Inst Med Trop Sao Paulo . 2019 Jul 1;61:e34. doi: 10.1590/S1678-9946201961034.Revista do Instituto de Medicina Tropical de Sao PauloThe Editor(s) and the Author(s), 2019info:eu-repo/semantics/openAccessAtribución-NoComercial 4.0 Internacional (CC BY-NC 4.0)https://creativecommons.org/licenses/by-nc/4.0/http://purl.org/coar/access_right/c_abf2https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6609135/pdf/1678-9946-rimtsp-61-S1678-9946201961034.pdfAcute diarrhoeaColombiaMolecular characterizationPost-vaccinationRotavirusPrevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern ColombiaArtículo de revistahttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1Textinfo:eu-repo/semantics/articlehttp://purl.org/redcol/resource_type/ARTinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/version/c_970fb48d4fbd8a85Todas las AudienciasPublicationORIGINALPrevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia.pdfPrevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia.pdfapplication/pdf179954https://repositorio.udes.edu.co/bitstreams/aac30516-840c-44bd-b381-18033ee1a832/downloadaa23235679295ddc73a2306087669cc9MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-859https://repositorio.udes.edu.co/bitstreams/f1ca88cd-e111-4e84-b219-9c4d2acf54a3/download38d94cf55aa1bf2dac1a736ac45c881cMD52TEXTPrevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia.pdf.txtPrevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia.pdf.txtExtracted texttext/plain5https://repositorio.udes.edu.co/bitstreams/5bac231c-6803-4123-af04-8414f8915e0e/download5dbe86c1111d64f45ba435df98fdc825MD53THUMBNAILPrevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia.pdf.jpgPrevalence and molecular typing of rotavirus in children with acute diarrhoea in Northeastern Colombia.pdf.jpgGenerated Thumbnailimage/jpeg12277https://repositorio.udes.edu.co/bitstreams/8d9983dd-b7a2-4705-ac8b-be317aee0bbc/downloadf15625492262fd7be7c13824fa8c3ae4MD54001/5659oai:repositorio.udes.edu.co:001/56592023-10-10 09:42:34.702https://creativecommons.org/licenses/by-nc/4.0/The Editor(s) and the Author(s), 2019https://repositorio.udes.edu.coRepositorio Universidad de Santandersoporte@metabiblioteca.comTGljZW5jaWEgZGUgUHVibGljYWNpw7NuIFVERVMKRGlyZWN0cmljZXMgZGUgVVNPIHkgQUNDRVNPCgo= |