Bacterial microbiome and physicochemical properties of irrigation water and soil in Chonto type tomato from Boyaca, Colombia

Autores:
Forero-Pineda, Nicolas
Correa-Castro, Tania-Alejandra
Serrano-Cely, Pablo-Antonio
Forero-Ulloa, Fabio-Emilio
Cely-Reyes, Germán-Eduardo
Tipo de recurso:
Article of journal
Fecha de publicación:
2023
Institución:
Universidad Pedagógica y Tecnológica de Colombia
Repositorio:
RiUPTC: Repositorio Institucional UPTC
Idioma:
OAI Identifier:
oai:repositorio.uptc.edu.co:001/21411
Acceso en línea:
https://repositorio.uptc.edu.co/handle/001/21411
https://doi.org/10.19053/uptc.24223719.15702
Palabra clave:
Solanum lycopersicum L.
Crop quality
Physicochemical variables
Microbione
Tomato
Vegetables
Solanum lycopersicum L.
Calidad del cultivo
Variables fisicoquímicas
Microbioma
Tomate
Vegetales
Rights
openAccess
License
Revista Colombiana de Ciencias Hortícolas - 2023
id REPOUPTC2_1a95fe23b69b14f44bd29773ca3fcf39
oai_identifier_str oai:repositorio.uptc.edu.co:001/21411
network_acronym_str REPOUPTC2
network_name_str RiUPTC: Repositorio Institucional UPTC
repository_id_str
dc.title.spa.fl_str_mv Bacterial microbiome and physicochemical properties of irrigation water and soil in Chonto type tomato from Boyaca, Colombia
title Bacterial microbiome and physicochemical properties of irrigation water and soil in Chonto type tomato from Boyaca, Colombia
spellingShingle Bacterial microbiome and physicochemical properties of irrigation water and soil in Chonto type tomato from Boyaca, Colombia
Solanum lycopersicum L.
Crop quality
Physicochemical variables
Microbione
Tomato
Vegetables
Solanum lycopersicum L.
Calidad del cultivo
Variables fisicoquímicas
Microbioma
Tomate
Vegetales
title_short Bacterial microbiome and physicochemical properties of irrigation water and soil in Chonto type tomato from Boyaca, Colombia
title_full Bacterial microbiome and physicochemical properties of irrigation water and soil in Chonto type tomato from Boyaca, Colombia
title_fullStr Bacterial microbiome and physicochemical properties of irrigation water and soil in Chonto type tomato from Boyaca, Colombia
title_full_unstemmed Bacterial microbiome and physicochemical properties of irrigation water and soil in Chonto type tomato from Boyaca, Colombia
title_sort Bacterial microbiome and physicochemical properties of irrigation water and soil in Chonto type tomato from Boyaca, Colombia
dc.creator.fl_str_mv Forero-Pineda, Nicolas
Correa-Castro, Tania-Alejandra
Serrano-Cely, Pablo-Antonio
Forero-Ulloa, Fabio-Emilio
Cely-Reyes, Germán-Eduardo
dc.contributor.author.eng.fl_str_mv Forero-Pineda, Nicolas
Correa-Castro, Tania-Alejandra
Serrano-Cely, Pablo-Antonio
Forero-Ulloa, Fabio-Emilio
Cely-Reyes, Germán-Eduardo
dc.subject.none.fl_str_mv Solanum lycopersicum L.
Crop quality
Physicochemical variables
Microbione
Tomato
Vegetables
Solanum lycopersicum L.
Calidad del cultivo
Variables fisicoquímicas
Microbioma
Tomate
Vegetales
topic Solanum lycopersicum L.
Crop quality
Physicochemical variables
Microbione
Tomato
Vegetables
Solanum lycopersicum L.
Calidad del cultivo
Variables fisicoquímicas
Microbioma
Tomate
Vegetales
publishDate 2023
dc.date.accessioned.none.fl_str_mv 2023-01-01 00:00:00
2026-04-16T17:45:13Z
dc.date.available.none.fl_str_mv 2023-01-01 00:00:00
dc.date.issued.none.fl_str_mv 2023-01-01
dc.type.spa.fl_str_mv Artículo de revista
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_2df8fbb1
dc.type.coar.none.fl_str_mv http://purl.org/coar/resource_type/c_6501
dc.type.driver.none.fl_str_mv info:eu-repo/semantics/article
dc.type.local.eng.fl_str_mv Journal article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.content.none.fl_str_mv Text
dc.type.coarversion.none.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
format http://purl.org/coar/resource_type/c_6501
status_str publishedVersion
dc.identifier.issn.none.fl_str_mv 2011-2173
dc.identifier.uri.none.fl_str_mv https://repositorio.uptc.edu.co/handle/001/21411
dc.identifier.doi.none.fl_str_mv 10.19053/uptc.24223719.15702
dc.identifier.eissn.none.fl_str_mv 2422-3719
dc.identifier.url.none.fl_str_mv https://doi.org/10.19053/uptc.24223719.15702
identifier_str_mv 2011-2173
10.19053/uptc.24223719.15702
2422-3719
url https://repositorio.uptc.edu.co/handle/001/21411
https://doi.org/10.19053/uptc.24223719.15702
dc.language.iso.none.fl_str_mv
language_invalid_str_mv
dc.relation.references.none.fl_str_mv Anzalone, A., A. Mosca, G. Dimaria, D. Nicotra, M. Tessitori, G.F. Privitera, A. Pulvirenti, C. Leonardi, and V. Catara. 2022. Soil and soilless tomato cultivation promote different microbial communities that provide new models for future crop interventions. Int. J. Mol. Sci. 23(15), 8820. Doi: https://doi.org/10.3390/ijms23158820
An, H., J. Zhang, L. Zhang, S. Li, B. Zhou, and X. Zhang. 2023. Effects of nutrition and light quality on the growth of southern highbush blueberry (Vaccinium corymbosum L.) in an advanced plant factory with artificial lighting (PFAL). Horticulturae 9(2), 287. https://doi.org/10.3390/horticulturae9020287
Alvarado, A., F. Bertsch, E. Bornemisza, G. Cabalceta, W. Forsythe, C. Henríquez, R. Mata, E. Molina, and R. Salas. 2001. Suelos derivados de cenizas volcánicas (Andisoles) de Costa Rica. Asociación Costarricense de la Ciencia del Suelo y Centro de Investigaciones Agronómicas/Universidad de Costa Rica. San José.
Alvarado, A. and W. Forsythe. 2005. Variación de la densidad aparente en órdenes de suelos de Costa Rica. Agron. Costarr. 29(1), 85-94.
Bonachela, S., M.D. Fernández, F.J. Cabrera, and M.R. Granados. 2018. Soil spatio-temporal distribution of water, salts and nutrients in greenhouse, drip-irrigated tomato crops using lysimetry and dielectric methods. Agric. Water Manage. 203, 151-161. Doi: https://doi.org/10.1016/j.agwat.2018.03.009
Bouksila, F., A. Bahri, R. Berndtsson, M. Persson, J. Rozema, and S.E.A.T.M. Van der Zee. 2013. Assessment of soil salinization risks under irrigation with brackish water in semiarid Tunisia. Environ. Exp. Bot. 92, 176-185. Doi: https://doi.org/10.1016/j.envexpbot.2012.06.002
Brissio, P.A. 2005.   Evaluación preliminar del estado de contaminación en suelos de la provincia de Neuquén donde se efectúan actividades de explotación hidrocarburífera.  Undergraduate thesis. Escuela Superior de Salud y Ambiente, Universidad Nacional de Comahue, Neuquén, Argentina.
Cabrera, F.J., S. Bonachela, M.D. Fernandez, M.R. Granados, and J.C. López. 2016. Lysimetry methods for monitoring soil solution electrical conductivity and nutrient concentration in greenhouse tomato crops. Agric. Water Manage. 178, 171-179. Doi: https://doi.org/10.1016/j.agwat.2016.09.024
Calderón-Medina, C.L., G.P.  Bautista-Mantilla, and S.  Rojas-González. 2018. Propiedades químicas, físicas y biológicas del suelo, indicadores del estado de diferentes ecosistemas en una terraza alta del departamento del Meta.  Orinoquia 22(2), 141-157.  Doi: https://doi.org/10.22579/20112629.524
Caporaso, J.G., J. Kuczynski, J. Stombaugh, K. Bittinger, F.D. Bushman, E.K. Costello, N. Fierer, A. Gonzalez, J.K. Goodrich, J.I. Gordon, G.A. Huttley, S.T. Kelley, D. Knights, J.E. Koenig, R.E. Ley, C.A. Lozupone, D. McDonald, B.D. Muegge, M. Pirrung, J. Reeder, J.R. Sevinsky, P.J. Turnbaugh, W.A. Walters, J. Widmann, T. Yatsunenko, J. Zaneveld, and R. Knight. 2010. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336. Doi: https://doi.org/10.1038/nmeth.f.303
Chandel, A., R. Mann, J. Kaur, S. Norton, D. Auer, J. Edwards, G. Spangenberg, and T. Sawbridge. 2022. The role of soil microbial diversity in the conservation of native seed bacterial microbiotas. Microorganisms 10(4), 750. Doi: https://doi.org/10.3390/microorganisms10040750
Colombia IGAC, Instituto Geográfico Agustín Codazzi.  2006. Métodos analíticos del laboratorio de suelos. 6th ed. Bogota.
Dadhwal, M., S. Jit, H. Kumari, and R. Lal. 2009. Sphingobium chinhatense sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from an HCH dumpsite. Int. J. Syst. Evol. Microbiol. 59(12), 3140-3144. Doi: https://doi.org/10.1099/ijs.0.005553-0
Davis, J.F. 1959. Organic soils, their formation, distribution, utilization and management. Sp. Bull. 425 Agricultural Experiment Station, Michigan State University, .
De Pascale, S., A. Maggio, C. Ruggiero, and G. Barbieri. 2003. Growth, water relations, and ion content of field-grown celery [Apium graveolens L. var. dulce (Mill.) Pers.] under saline irrigation. J. Am. Soc. Hortic. Sci. 128(1), 136-143. Doi: https://doi.org/10.21273/JASHS.128.1.0136
Edgar, R.C. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26(19), 2460-2461. Doi: https://doi.org/10.1093/bioinformatics/btq461
Edgar, R.C., B.J. Haas, J.C. Clemente, C. Quince, and R. Knight. 2011. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27(16), 2194-2200. Doi: https://doi.org/10.1093/bioinformatics/btr381
Etesami, H., S. Emami, and H.A. Alikhani. 2017. Potassium solubilizing bacteria (KSB): Mechanisms, promotion of plant growth, and future prospects - A review. J. Soil Sci. Plant Nutr. 17(4), 897-911. Doi: https://doi.org/10.4067/S0718-95162017000400005
FAO.   2016.   Propiedades   físicas   del   suelo.   In:     http://www.fao.org/soils-portal/levantamiento-de-suelos/propiedades-del-suelo/propiedades-fisicas/es/; consulted: March, 2022.
Ferreras, L.A., S.M.I.  Toresani, V.S.  Faggioli, and C.M.  Galarza.  2015.  Sensibilidad de indicadores biológicos edáficos en un Argiudol de la Región Pampeana Argentina. Span. J. Soil Sci. 5(3), 220-235.
Foyer, C.H., B. Rasool, J.W. Davey, and R.D. Hancock. 2016. Cross-tolerance to biotic and abiotic stresses in plants: A focus on resistance to aphid infestation. J. Exp. Bot. 67(7), 2025-2037. Doi: https://doi.org/10.1093/jxb/erw079
GISSAT-UPTC, Grupo Interinstitucional de Investigación en Suelos Sulfatados Ácidos Tropicales.  2012. Evaluación de impacto y plan de manejo de los suelos afectados por las inundaciones en los valles de Tundama y Sugamuxi (Boyacá). Universidad Pedagógica y Tecnológica de Colombia, Tunja.
Gobernación de Boyacá. 2020. Plan Departamental de Extensión Agropecuaria-PDEA 2020-2023.
González, I.  and S.  Déjean.  2021.  CCA:  Canonical correlation analysis.  R package version  1.2.1.  In:  https://cran.r-project.org/web/packages/CCA/index.html; consulted: March, 2022.
Gouda, S., R.G. Kerry, G. Das, S. Paramithiotis, H.-S. Shin, and J.K. Patra. 2018. Revitalization of plant growth promoting rhizobacteria for sustainable development in agriculture. Microbiol. Res. 206, 131-140. Doi: https://doi.org/10.1016/j.micres.2017.08.016
Harrell, F.E. and C. Dupont. 2023. Hmisc: Harrell miscellaneous. R package version 5.1-0. In: https://cran.r-project.org/web/packages/Hmisc/; consulted: March, 2022.
Husson, F., J. Josse, S. Le, and J. Mazet. 2014. FactoMineR: Multivariate exploratory data  analysis  and  data  mining with R. R package version 1.34. In: https://search.r-project.org/CRAN/refmans/FactoMineR/html/FactoMineR-package.html; consulted: March,2022.
Jaurixje, M., D. Torres, B. Mendoza, M. Henríquez, and J. Contreras. 2013. Propiedades físicas y químicas del suelo y su relación con la actividad biológica bajo diferentes manejos en la zona de Quíbor, estado Lara. Bioagro 25(1), 47-56.
Khan, N., R.H. Kazmi, L.A.J. Willems, A.W. van Heusden, W. Ligterink, and H.W.M. Hilhorst. 2012. Exploring the natural variation for seedling traits and their link with seed dimensions in tomato. PLoS One 7(8), e43991. Doi: https://doi.org/10.1371/journal.pone.0043991
Klindworth, A., E. Pruesse, T. Schweer, J. Peplies, C. Quast, M. Horn, and F.O. Glöckner. 2013. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 41(1), e1. Doi: https://doi.org/10.1093/nar/gks808
Lahti, L. and S. Shetty. 2019. Microbiota R package. Bioconductor version 3.18. In: https://bioconductor.org/packages/devel/bioc/html/microbiome.html; consulted: March, 2022.
Lal, R., C. Dogra, S. Malhotra, P. Sharma, and R. Pal. 2006. Diversity, distribution and divergence of lin genes in hexachlorocyclohexane-degrading sphingomonads. Trends Biotechnol. 24(3), 121-130. Doi: https://doi.org/10.1016/j.tibtech.2006.01.005
Li, L, M, Ding, Z. Lan, Y. Zhao, and J. Chen. 2019. Light availability and patterns of allocation to reproductive and vegetative biomass in the sexes of the dioecious macrophyte Vallisneria spinulosa. Front. Plant Sci. 10, 572. Doi: https://doi.org/10.3389/fpls.2019.00572
Ma, G., J. Kang, J. Wang, Y. Chen, H. Lu, L. Wang, C. Wang, Y. Xie, D. Ma, and G. Kang. 2020. Bacterial community structure and predicted function in wheat soil from the north China plain are closely linked with soil and plant characteristics after seven years of irrigation and nitrogen application. Front. Microbiol. 11, 506. Doi: https://doi.org/10.3389/fmicb.2020.00506
Maggio, A., S. De Pascale, G. Angelino, C. Ruggiero, and G. Barbieri. 2004. Physiological response of tomato to saline irrigation in long-term salinized soils. Eur. J. Agron. 21(2), 149-159. Doi: https://doi.org/10.1016/S1161-0301(03)00092-3
Manzotti, A., A. Bergna, M. Burow, H.J.L. Jørgensen, T. Cernava, G. Berg, D.B. Collinge, and B. Jensen. 2020. Insights into the community structure and lifestyle of the fungal root endophytes of tomato by combining amplicon sequencing and isolation approaches with phytohormone profiling. FEMS Microbiol. Ecol. 96(5), fiaa052. Doi: https://doi.org/10.1093/femsec/fiaa052
Martínez, E., L.F. Rodríguez, and N. Medina. 2014. Estudio de factibilidad de una planta empacadora (packing house) para cebolla de bulbo (Allium cepa L.) en el Distrito de Riego del Alto Chicamocha (Boyacá). Rev. Colomb. Cienc. Hortic. 8(2), 287-301. Doi: https://doi.org/10.17584/rcch.2014v8i2.3221
Monsalve-C., O.I.,  J.S.   Gutiérrez-D., and W.A. Cardona.  2017.  Factores que  intervienen  en  el  proceso  de  mineralización  de  nitrógeno  cuando  son  aplicadas  enmiendas  orgánicas  al  suelo.  Una  revisión.  Rev.  Colomb.  Cienc.  Hortic.  11(1), 200-209. Doi:  https://doi.org/10.17584/rcch.2017v11i1.5663
Nakayasu, M., K. Takamatsu, K. Yazaki, and A. Sugiyama. 2022. Plant specialized metabolites in the rhizosphere of tomatoes: secretion and effects on microorganisms. Biosci. Biotechnol. Biochem. 87(1), 13-20. Doi: https://doi.org/10.1093/bbb/zbac181
Oksanen, J.,  G.L.  Simpson, F.G.  Blanchet, R.  Kindt, P.  Legendre, P.R.  Minchin, R.B.  O’Hara, P.  Solymos, M.HH.  Stevens, E.  Szoecs, H. Wagner, M.  Barbour, M.  Bedward, B.  Bolker, D.  Borcard, G.  Carvalho, M.  Chirico, M. De Caceres, S. Durand, H.B.A. Evangelis-ta, R.  FitzJohn, M.  Friendly, B.  Furneaux, G.  Hanni-gan, M.O. Hill, L. Lahti, D. McGlinn, M.-H. Ouellette, E.R. Cunha, T. Smith, A. Stier, C.J.F. Ter Braak, and J. Weedon.  2022.  Vegan:  Community ecology package.  R package version 3.4.0 In: https://CRAN.R-project.org/package=vegan; consulted: March, 2022.
Pacheco, M.C., L.F. Rodríguez, and L.T. Bermúdez. 2006. Plan estratégico de mercadeo para la cadena hortícola en el Distrito de riego del Alto Chicamocha. Agron. Colomb. 24(1),
Parmar, P. and S.S. Sindhu. 2013. Potassium solubilisation by rhizosphere bacteria: Influence of nutritional and environmental conditions. J. Microbiol. Res. 3(1), 25-31.
Prakash, O. and R. Lal. 2006. Description of Sphingobium fuliginis sp. nov., a phenanthrene-degrading bacterium from a fly ash dumping site, and reclassification of Sphingomonas cloacae as Sphingobium cloacae comb. nov. Int. J. Syst. Evol. Microbiol. 56(9), 2147-2152. Doi: https://doi.org/10.1099/ijs.0.64080-0
Quast, C., E. Pruesse, P. Yilmaz, J. Gerken, T. Schweer, P. Yarza, J. Peplies, and F.O. Glöckner. 2013. The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools. Opens external link in new window. Nucl. Acids Res. 41(D1), 590-596. Doi: https://doi.org/10.1093/nar/gks1219
Quinteros, J.A., J. Gómez-García, M. Solano, G. Llumiquinga, C. Burgos, and D. Carrera-Villacrés. 2019. Evalua-ción de la calidad de agua para riego y aprovechamiento del recurso hídrico de la quebrada Togllahuayco. Siembra 6(2), 46-57. Doi: https://doi.org/10.29166/siembra.v6i2.1641
Ren, Z., F. Wang, X. Qu, J.J. Elser, Y. Liu and L. Chu. 2017. Taxonomic and functional diferences between microbial communities in Qinghai Lake and its input streams. Front Microbiol. 8, 2319. Doi: https://doi.org/10.3389/fmicb.2017.02319
Rodriguez, P.A., M. Rothballer, S.P. Chowdhury, T. Nussbaumer, C. Gutjahr, and P. Falter-Braun. 2019. Systems biology of plant-microbiota interactions. Mol. Plant, 12(6), 804-821. Doi: https://doi.org/10.1016/j.molp.2019.05.006
Schmitz, L., Z. Yan, M. Schneijderberg, M. de Roij, R. Pijnenburg, Q. Zheng, C. Franken, A. Dechesne, L.M. Trindade, R. van Velzen, T. Bisseling, R. Geurts, and X. Cheng. 2022. Synthetic bacterial community derived from a desert rhizosphere confers salt stress resilience to tomato in the presence of a soil microbiota. ISME J. 16(8), 1907-1920. Doi: https://doi.org/10.1038/s41396-022-01238-3
Shaheb, M.R., R. Venkatesh, and S.A. Shearer. 2021. A review on the effect of soil compaction and its management for sustainable crop production. J. Biosyst. Eng. 46, 417-439. https://doi.org/10.1007/s42853-021-00117-7
Singh, G., D.R. Biswas, and T.S. Marwaha. 2010. Mobilization of potassium from waste mica by plant growth promoting rhizobacteria and its assimilation by maize (Zea mays) and wheat (Triticum aestivum L.): A hydroponics study under phytotron growth chamber. J. Plant Nutr. 33(8), 1236-1251. Doi: https://doi.org/10.1080/01904161003765760
Suman, J., A. Rakshit, S.D. Ogireddy, S. Singh, C. Gupta, and J. Chandrakala. 2022. Microbiome as a key player in sustainable agriculture and human health. Front. Soil Sci. 2, 821589. Doi: https://doi.org/10.3389/fsoil.2022.821589
Toledo, D.M., J.A. Galantini, E. Ferreccio, S. Arzuaga, L. Gimenez, and S. Vázquez. 2013. Indicadores e índices de calidad en suelos rojos bajo sistemas naturales y cultivados. Cienc. Suelo 31(2), 201-212.
Usero, F.M., C. Armas, J.A. Morillo, M. Gallardo, R.B. Thompson, and F.I. Pugnaire. 2021. Effects of soil microbial communities associated to different soil fertilization practices on tomato growth in intensive greenhouse agriculture. Appl. Soil Ecol. 162, 103896. Doi: https://doi.org/10.1016/j.apsoil.2021.103896
Venturi, V. and C. Keel. 2016. Signaling in the rhizosphere. Trends Plant Sci. 21(3), 187-198. Doi: https://doi.org/10.1016/j.tplants.2016.01.005
Wickham, H. 2011 ggplot2. WIREs Comp. Statis. 3(2), 180-185. Doi: https://doi.org/10.1002/wics.147
Zhang, Z., Y.S. Xiao, Y. Zhan, Z. Zhang, Y. Liu, Y. Wei, T. Xu, and J. Li. 2022. Tomato microbiota under long-term organic and conventional farming. iMeta 1(3), e48. Doi: https://doi.org/10.1002/imt2.48
dc.relation.citationendpage.none.fl_str_mv e15702
dc.relation.citationissue.eng.fl_str_mv 1
dc.relation.citationstartpage.none.fl_str_mv e15702
dc.relation.citationvolume.eng.fl_str_mv 17
dc.relation.ispartofjournal.eng.fl_str_mv Revista Colombiana de Ciencias Hortícolas
dc.relation.bitstream.none.fl_str_mv https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/download/15702/12942
https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/download/15702/13005
https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/download/15702/13006
https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/download/15702/13007
dc.rights.none.fl_str_mv Revista Colombiana de Ciencias Hortícolas - 2023
dc.rights.uri.none.fl_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0
dc.rights.accessrights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.coar.none.fl_str_mv http://purl.org/coar/access_right/c_abf2
rights_invalid_str_mv Revista Colombiana de Ciencias Hortícolas - 2023
http://creativecommons.org/licenses/by-nc-sa/4.0
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.mimetype.none.fl_str_mv application/pdf
application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
image/png
dc.publisher.eng.fl_str_mv Sociedad Colombiana de Ciencias Hortícolas-SCCH and Universidad Pedagógica y Tecnológica de Colombia-UPTC
dc.source.none.fl_str_mv https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/view/15702
institution Universidad Pedagógica y Tecnológica de Colombia
bitstream.url.fl_str_mv https://repositorio.uptc.edu.co/bitstreams/5c38e212-91f8-4280-b0e0-b79e223aaf6f/download
bitstream.checksum.fl_str_mv 107af8fee5b85b94ff2404c56d7611dd
bitstream.checksumAlgorithm.fl_str_mv MD5
repository.name.fl_str_mv Repositorio Institucional UPTC
repository.mail.fl_str_mv bdigital@metabiblioteca.com
_version_ 1881674013960306688
spelling Forero-Pineda, NicolasCorrea-Castro, Tania-AlejandraSerrano-Cely, Pablo-AntonioForero-Ulloa, Fabio-EmilioCely-Reyes, Germán-Eduardo2023-01-01 00:00:002026-04-16T17:45:13Z2023-01-01 00:00:002023-01-012011-2173https://repositorio.uptc.edu.co/handle/001/2141110.19053/uptc.24223719.157022422-3719https://doi.org/10.19053/uptc.24223719.15702application/pdfapplication/vnd.openxmlformats-officedocument.spreadsheetml.sheetapplication/vnd.openxmlformats-officedocument.spreadsheetml.sheetimage/pngSociedad Colombiana de Ciencias Hortícolas-SCCH and Universidad Pedagógica y Tecnológica de Colombia-UPTCRevista Colombiana de Ciencias Hortícolas - 2023http://creativecommons.org/licenses/by-nc-sa/4.0info:eu-repo/semantics/openAccessThis work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.http://purl.org/coar/access_right/c_abf2https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/view/15702Solanum lycopersicum L.Crop qualityPhysicochemical variablesMicrobioneTomatoVegetablesSolanum lycopersicum L.Calidad del cultivoVariables fisicoquímicasMicrobiomaTomateVegetalesBacterial microbiome and physicochemical properties of irrigation water and soil in Chonto type tomato from Boyaca, ColombiaArtículo de revistahttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1info:eu-repo/semantics/articleJournal articleinfo:eu-repo/semantics/publishedVersionTexthttp://purl.org/coar/version/c_970fb48d4fbd8a85Anzalone, A., A. Mosca, G. Dimaria, D. Nicotra, M. Tessitori, G.F. Privitera, A. Pulvirenti, C. Leonardi, and V. Catara. 2022. Soil and soilless tomato cultivation promote different microbial communities that provide new models for future crop interventions. Int. J. Mol. Sci. 23(15), 8820. Doi: https://doi.org/10.3390/ijms23158820An, H., J. Zhang, L. Zhang, S. Li, B. Zhou, and X. Zhang. 2023. Effects of nutrition and light quality on the growth of southern highbush blueberry (Vaccinium corymbosum L.) in an advanced plant factory with artificial lighting (PFAL). Horticulturae 9(2), 287. https://doi.org/10.3390/horticulturae9020287Alvarado, A., F. Bertsch, E. Bornemisza, G. Cabalceta, W. Forsythe, C. Henríquez, R. Mata, E. Molina, and R. Salas. 2001. Suelos derivados de cenizas volcánicas (Andisoles) de Costa Rica. Asociación Costarricense de la Ciencia del Suelo y Centro de Investigaciones Agronómicas/Universidad de Costa Rica. San José.Alvarado, A. and W. Forsythe. 2005. Variación de la densidad aparente en órdenes de suelos de Costa Rica. Agron. Costarr. 29(1), 85-94.Bonachela, S., M.D. Fernández, F.J. Cabrera, and M.R. Granados. 2018. Soil spatio-temporal distribution of water, salts and nutrients in greenhouse, drip-irrigated tomato crops using lysimetry and dielectric methods. Agric. Water Manage. 203, 151-161. Doi: https://doi.org/10.1016/j.agwat.2018.03.009Bouksila, F., A. Bahri, R. Berndtsson, M. Persson, J. Rozema, and S.E.A.T.M. Van der Zee. 2013. Assessment of soil salinization risks under irrigation with brackish water in semiarid Tunisia. Environ. Exp. Bot. 92, 176-185. Doi: https://doi.org/10.1016/j.envexpbot.2012.06.002Brissio, P.A. 2005.   Evaluación preliminar del estado de contaminación en suelos de la provincia de Neuquén donde se efectúan actividades de explotación hidrocarburífera.  Undergraduate thesis. Escuela Superior de Salud y Ambiente, Universidad Nacional de Comahue, Neuquén, Argentina.Cabrera, F.J., S. Bonachela, M.D. Fernandez, M.R. Granados, and J.C. López. 2016. Lysimetry methods for monitoring soil solution electrical conductivity and nutrient concentration in greenhouse tomato crops. Agric. Water Manage. 178, 171-179. Doi: https://doi.org/10.1016/j.agwat.2016.09.024Calderón-Medina, C.L., G.P.  Bautista-Mantilla, and S.  Rojas-González. 2018. Propiedades químicas, físicas y biológicas del suelo, indicadores del estado de diferentes ecosistemas en una terraza alta del departamento del Meta.  Orinoquia 22(2), 141-157.  Doi: https://doi.org/10.22579/20112629.524Caporaso, J.G., J. Kuczynski, J. Stombaugh, K. Bittinger, F.D. Bushman, E.K. Costello, N. Fierer, A. Gonzalez, J.K. Goodrich, J.I. Gordon, G.A. Huttley, S.T. Kelley, D. Knights, J.E. Koenig, R.E. Ley, C.A. Lozupone, D. McDonald, B.D. Muegge, M. Pirrung, J. Reeder, J.R. Sevinsky, P.J. Turnbaugh, W.A. Walters, J. Widmann, T. Yatsunenko, J. Zaneveld, and R. Knight. 2010. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336. Doi: https://doi.org/10.1038/nmeth.f.303Chandel, A., R. Mann, J. Kaur, S. Norton, D. Auer, J. Edwards, G. Spangenberg, and T. Sawbridge. 2022. The role of soil microbial diversity in the conservation of native seed bacterial microbiotas. Microorganisms 10(4), 750. Doi: https://doi.org/10.3390/microorganisms10040750Colombia IGAC, Instituto Geográfico Agustín Codazzi.  2006. Métodos analíticos del laboratorio de suelos. 6th ed. Bogota.Dadhwal, M., S. Jit, H. Kumari, and R. Lal. 2009. Sphingobium chinhatense sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from an HCH dumpsite. Int. J. Syst. Evol. Microbiol. 59(12), 3140-3144. Doi: https://doi.org/10.1099/ijs.0.005553-0Davis, J.F. 1959. Organic soils, their formation, distribution, utilization and management. Sp. Bull. 425 Agricultural Experiment Station, Michigan State University, .De Pascale, S., A. Maggio, C. Ruggiero, and G. Barbieri. 2003. Growth, water relations, and ion content of field-grown celery [Apium graveolens L. var. dulce (Mill.) Pers.] under saline irrigation. J. Am. Soc. Hortic. Sci. 128(1), 136-143. Doi: https://doi.org/10.21273/JASHS.128.1.0136Edgar, R.C. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26(19), 2460-2461. Doi: https://doi.org/10.1093/bioinformatics/btq461Edgar, R.C., B.J. Haas, J.C. Clemente, C. Quince, and R. Knight. 2011. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27(16), 2194-2200. Doi: https://doi.org/10.1093/bioinformatics/btr381Etesami, H., S. Emami, and H.A. Alikhani. 2017. Potassium solubilizing bacteria (KSB): Mechanisms, promotion of plant growth, and future prospects - A review. J. Soil Sci. Plant Nutr. 17(4), 897-911. Doi: https://doi.org/10.4067/S0718-95162017000400005FAO.   2016.   Propiedades   físicas   del   suelo.   In:     http://www.fao.org/soils-portal/levantamiento-de-suelos/propiedades-del-suelo/propiedades-fisicas/es/; consulted: March, 2022.Ferreras, L.A., S.M.I.  Toresani, V.S.  Faggioli, and C.M.  Galarza.  2015.  Sensibilidad de indicadores biológicos edáficos en un Argiudol de la Región Pampeana Argentina. Span. J. Soil Sci. 5(3), 220-235.Foyer, C.H., B. Rasool, J.W. Davey, and R.D. Hancock. 2016. Cross-tolerance to biotic and abiotic stresses in plants: A focus on resistance to aphid infestation. J. Exp. Bot. 67(7), 2025-2037. Doi: https://doi.org/10.1093/jxb/erw079GISSAT-UPTC, Grupo Interinstitucional de Investigación en Suelos Sulfatados Ácidos Tropicales.  2012. Evaluación de impacto y plan de manejo de los suelos afectados por las inundaciones en los valles de Tundama y Sugamuxi (Boyacá). Universidad Pedagógica y Tecnológica de Colombia, Tunja.Gobernación de Boyacá. 2020. Plan Departamental de Extensión Agropecuaria-PDEA 2020-2023.González, I.  and S.  Déjean.  2021.  CCA:  Canonical correlation analysis.  R package version  1.2.1.  In:  https://cran.r-project.org/web/packages/CCA/index.html; consulted: March, 2022.Gouda, S., R.G. Kerry, G. Das, S. Paramithiotis, H.-S. Shin, and J.K. Patra. 2018. Revitalization of plant growth promoting rhizobacteria for sustainable development in agriculture. Microbiol. Res. 206, 131-140. Doi: https://doi.org/10.1016/j.micres.2017.08.016Harrell, F.E. and C. Dupont. 2023. Hmisc: Harrell miscellaneous. R package version 5.1-0. In: https://cran.r-project.org/web/packages/Hmisc/; consulted: March, 2022.Husson, F., J. Josse, S. Le, and J. Mazet. 2014. FactoMineR: Multivariate exploratory data  analysis  and  data  mining with R. R package version 1.34. In: https://search.r-project.org/CRAN/refmans/FactoMineR/html/FactoMineR-package.html; consulted: March,2022.Jaurixje, M., D. Torres, B. Mendoza, M. Henríquez, and J. Contreras. 2013. Propiedades físicas y químicas del suelo y su relación con la actividad biológica bajo diferentes manejos en la zona de Quíbor, estado Lara. Bioagro 25(1), 47-56.Khan, N., R.H. Kazmi, L.A.J. Willems, A.W. van Heusden, W. Ligterink, and H.W.M. Hilhorst. 2012. Exploring the natural variation for seedling traits and their link with seed dimensions in tomato. PLoS One 7(8), e43991. Doi: https://doi.org/10.1371/journal.pone.0043991Klindworth, A., E. Pruesse, T. Schweer, J. Peplies, C. Quast, M. Horn, and F.O. Glöckner. 2013. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 41(1), e1. Doi: https://doi.org/10.1093/nar/gks808Lahti, L. and S. Shetty. 2019. Microbiota R package. Bioconductor version 3.18. In: https://bioconductor.org/packages/devel/bioc/html/microbiome.html; consulted: March, 2022.Lal, R., C. Dogra, S. Malhotra, P. Sharma, and R. Pal. 2006. Diversity, distribution and divergence of lin genes in hexachlorocyclohexane-degrading sphingomonads. Trends Biotechnol. 24(3), 121-130. Doi: https://doi.org/10.1016/j.tibtech.2006.01.005Li, L, M, Ding, Z. Lan, Y. Zhao, and J. Chen. 2019. Light availability and patterns of allocation to reproductive and vegetative biomass in the sexes of the dioecious macrophyte Vallisneria spinulosa. Front. Plant Sci. 10, 572. Doi: https://doi.org/10.3389/fpls.2019.00572Ma, G., J. Kang, J. Wang, Y. Chen, H. Lu, L. Wang, C. Wang, Y. Xie, D. Ma, and G. Kang. 2020. Bacterial community structure and predicted function in wheat soil from the north China plain are closely linked with soil and plant characteristics after seven years of irrigation and nitrogen application. Front. Microbiol. 11, 506. Doi: https://doi.org/10.3389/fmicb.2020.00506Maggio, A., S. De Pascale, G. Angelino, C. Ruggiero, and G. Barbieri. 2004. Physiological response of tomato to saline irrigation in long-term salinized soils. Eur. J. Agron. 21(2), 149-159. Doi: https://doi.org/10.1016/S1161-0301(03)00092-3Manzotti, A., A. Bergna, M. Burow, H.J.L. Jørgensen, T. Cernava, G. Berg, D.B. Collinge, and B. Jensen. 2020. Insights into the community structure and lifestyle of the fungal root endophytes of tomato by combining amplicon sequencing and isolation approaches with phytohormone profiling. FEMS Microbiol. Ecol. 96(5), fiaa052. Doi: https://doi.org/10.1093/femsec/fiaa052Martínez, E., L.F. Rodríguez, and N. Medina. 2014. Estudio de factibilidad de una planta empacadora (packing house) para cebolla de bulbo (Allium cepa L.) en el Distrito de Riego del Alto Chicamocha (Boyacá). Rev. Colomb. Cienc. Hortic. 8(2), 287-301. Doi: https://doi.org/10.17584/rcch.2014v8i2.3221Monsalve-C., O.I.,  J.S.   Gutiérrez-D., and W.A. Cardona.  2017.  Factores que  intervienen  en  el  proceso  de  mineralización  de  nitrógeno  cuando  son  aplicadas  enmiendas  orgánicas  al  suelo.  Una  revisión.  Rev.  Colomb.  Cienc.  Hortic.  11(1), 200-209. Doi:  https://doi.org/10.17584/rcch.2017v11i1.5663Nakayasu, M., K. Takamatsu, K. Yazaki, and A. Sugiyama. 2022. Plant specialized metabolites in the rhizosphere of tomatoes: secretion and effects on microorganisms. Biosci. Biotechnol. Biochem. 87(1), 13-20. Doi: https://doi.org/10.1093/bbb/zbac181Oksanen, J.,  G.L.  Simpson, F.G.  Blanchet, R.  Kindt, P.  Legendre, P.R.  Minchin, R.B.  O’Hara, P.  Solymos, M.HH.  Stevens, E.  Szoecs, H. Wagner, M.  Barbour, M.  Bedward, B.  Bolker, D.  Borcard, G.  Carvalho, M.  Chirico, M. De Caceres, S. Durand, H.B.A. Evangelis-ta, R.  FitzJohn, M.  Friendly, B.  Furneaux, G.  Hanni-gan, M.O. Hill, L. Lahti, D. McGlinn, M.-H. Ouellette, E.R. Cunha, T. Smith, A. Stier, C.J.F. Ter Braak, and J. Weedon.  2022.  Vegan:  Community ecology package.  R package version 3.4.0 In: https://CRAN.R-project.org/package=vegan; consulted: March, 2022.Pacheco, M.C., L.F. Rodríguez, and L.T. Bermúdez. 2006. Plan estratégico de mercadeo para la cadena hortícola en el Distrito de riego del Alto Chicamocha. Agron. Colomb. 24(1),Parmar, P. and S.S. Sindhu. 2013. Potassium solubilisation by rhizosphere bacteria: Influence of nutritional and environmental conditions. J. Microbiol. Res. 3(1), 25-31.Prakash, O. and R. Lal. 2006. Description of Sphingobium fuliginis sp. nov., a phenanthrene-degrading bacterium from a fly ash dumping site, and reclassification of Sphingomonas cloacae as Sphingobium cloacae comb. nov. Int. J. Syst. Evol. Microbiol. 56(9), 2147-2152. Doi: https://doi.org/10.1099/ijs.0.64080-0Quast, C., E. Pruesse, P. Yilmaz, J. Gerken, T. Schweer, P. Yarza, J. Peplies, and F.O. Glöckner. 2013. The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools. Opens external link in new window. Nucl. Acids Res. 41(D1), 590-596. Doi: https://doi.org/10.1093/nar/gks1219Quinteros, J.A., J. Gómez-García, M. Solano, G. Llumiquinga, C. Burgos, and D. Carrera-Villacrés. 2019. Evalua-ción de la calidad de agua para riego y aprovechamiento del recurso hídrico de la quebrada Togllahuayco. Siembra 6(2), 46-57. Doi: https://doi.org/10.29166/siembra.v6i2.1641Ren, Z., F. Wang, X. Qu, J.J. Elser, Y. Liu and L. Chu. 2017. Taxonomic and functional diferences between microbial communities in Qinghai Lake and its input streams. Front Microbiol. 8, 2319. Doi: https://doi.org/10.3389/fmicb.2017.02319Rodriguez, P.A., M. Rothballer, S.P. Chowdhury, T. Nussbaumer, C. Gutjahr, and P. Falter-Braun. 2019. Systems biology of plant-microbiota interactions. Mol. Plant, 12(6), 804-821. Doi: https://doi.org/10.1016/j.molp.2019.05.006Schmitz, L., Z. Yan, M. Schneijderberg, M. de Roij, R. Pijnenburg, Q. Zheng, C. Franken, A. Dechesne, L.M. Trindade, R. van Velzen, T. Bisseling, R. Geurts, and X. Cheng. 2022. Synthetic bacterial community derived from a desert rhizosphere confers salt stress resilience to tomato in the presence of a soil microbiota. ISME J. 16(8), 1907-1920. Doi: https://doi.org/10.1038/s41396-022-01238-3Shaheb, M.R., R. Venkatesh, and S.A. Shearer. 2021. A review on the effect of soil compaction and its management for sustainable crop production. J. Biosyst. Eng. 46, 417-439. https://doi.org/10.1007/s42853-021-00117-7Singh, G., D.R. Biswas, and T.S. Marwaha. 2010. Mobilization of potassium from waste mica by plant growth promoting rhizobacteria and its assimilation by maize (Zea mays) and wheat (Triticum aestivum L.): A hydroponics study under phytotron growth chamber. J. Plant Nutr. 33(8), 1236-1251. Doi: https://doi.org/10.1080/01904161003765760Suman, J., A. Rakshit, S.D. Ogireddy, S. Singh, C. Gupta, and J. Chandrakala. 2022. Microbiome as a key player in sustainable agriculture and human health. Front. Soil Sci. 2, 821589. Doi: https://doi.org/10.3389/fsoil.2022.821589Toledo, D.M., J.A. Galantini, E. Ferreccio, S. Arzuaga, L. Gimenez, and S. Vázquez. 2013. Indicadores e índices de calidad en suelos rojos bajo sistemas naturales y cultivados. Cienc. Suelo 31(2), 201-212.Usero, F.M., C. Armas, J.A. Morillo, M. Gallardo, R.B. Thompson, and F.I. Pugnaire. 2021. Effects of soil microbial communities associated to different soil fertilization practices on tomato growth in intensive greenhouse agriculture. Appl. Soil Ecol. 162, 103896. Doi: https://doi.org/10.1016/j.apsoil.2021.103896Venturi, V. and C. Keel. 2016. Signaling in the rhizosphere. Trends Plant Sci. 21(3), 187-198. Doi: https://doi.org/10.1016/j.tplants.2016.01.005Wickham, H. 2011 ggplot2. WIREs Comp. Statis. 3(2), 180-185. Doi: https://doi.org/10.1002/wics.147Zhang, Z., Y.S. Xiao, Y. Zhan, Z. Zhang, Y. Liu, Y. Wei, T. Xu, and J. Li. 2022. Tomato microbiota under long-term organic and conventional farming. iMeta 1(3), e48. Doi: https://doi.org/10.1002/imt2.48e157021e1570217Revista Colombiana de Ciencias Hortícolashttps://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/download/15702/12942https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/download/15702/13005https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/download/15702/13006https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/download/15702/13007PublicationOREORE.xmltext/xml2996https://repositorio.uptc.edu.co/bitstreams/5c38e212-91f8-4280-b0e0-b79e223aaf6f/download107af8fee5b85b94ff2404c56d7611ddMD51falseAnonymousREAD001/21411oai:repositorio.uptc.edu.co:001/214112026-04-20 14:28:01.011http://creativecommons.org/licenses/by-nc-sa/4.0metadata.onlyhttps://repositorio.uptc.edu.coRepositorio Institucional UPTCbdigital@metabiblioteca.com