Molecular characterization of mandarin (Citrus reticulata Blanco) using ISSR markers

In order to establish the molecular diversity of citrus production systems from Villa Sucre (Colombia), mainly "Creole mandarin", the study analyzed C. reticulata farm’s samples using six ISSR molecular markers. A total of 61 polymorphisms were characterized, 42% of them were highly common...

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Tipo de recurso:
http://purl.org/coar/resource_type/c_6622
Fecha de publicación:
2020
Institución:
Universidad Pedagógica y Tecnológica de Colombia
Repositorio:
RiUPTC: Repositorio Institucional UPTC
Idioma:
eng
OAI Identifier:
oai:repositorio.uptc.edu.co:001/16877
Acceso en línea:
https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/view/9397
https://repositorio.uptc.edu.co/handle/001/16877
Palabra clave:
Polymorphisms
Genetic diversity
Citrus fruits
Introduced varieties
Plant breeding
Plant genetic resources
Polimorfismo
Variabilidad genética
Frutas cítricas
Variedades naturalizadas
Fitomejoramiento
Recursos genéticos vegetales
Rights
License
Copyright (c) 2020 Revista Colombiana de Ciencias Hortícolas
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spelling 2020-05-012024-07-08T14:42:38Z2024-07-08T14:42:38Zhttps://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/view/939710.17584/rcch.2020v14i2.9397https://repositorio.uptc.edu.co/handle/001/16877In order to establish the molecular diversity of citrus production systems from Villa Sucre (Colombia), mainly "Creole mandarin", the study analyzed C. reticulata farm’s samples using six ISSR molecular markers. A total of 61 polymorphisms were characterized, 42% of them were highly common, with a mid- average polymorphic information content (PIC) of 0.42 indicating a high polymorphic variation. Molecular relations based in Dice coefficient and the UPGMA algorithm, showed the existing genetic relationships between the crop areas, grouping them in five separate clades and two main subgroups (MDS). This is the first molecular classification done in the area, sets the basis for mandarin crop molecular diversity, and provides vital information for mandarin crop management programs.Con el propósito de establecer la diversidad molecular de sistemas de producción de cítricos provenientes de Villa Sucre (Colombia), principalmente "mandarina criolla", el estudio analizó muestras de fincas de C. reticulata utilizando seis marcadores moleculares ISSR. Se caracterizaron un total de 61 polimorfismos, el 42% de ellos fueron muy comunes, con un contenido de información polimórfica (PIC) promedio medio de 0.42 indicando una alta variación polimórfica. Relaciones moleculares basadas en el coeficiente de Dice y el algoritmo UPGMA, mostraron las relaciones genéticas existentes entre las áreas de cultivo, agrupándolas en cinco lados separados y dos subgrupos principales (MDS). Esta es la primera clasificación molecular realizada en el área, sienta las bases para la diversidad molecular del cultivo de mandarina y proporciona información vital para los programas de manejo del cultivo de mandarina.application/pdfengengSociedad Colombiana de Ciencias Hortícolas-SCCH and Universidad Pedagógica y Tecnológica de Colombia-UPTChttps://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/view/9397/9890Copyright (c) 2020 Revista Colombiana de Ciencias Hortícolashttps://creativecommons.org/licenses/by-nc/4.0/http://purl.org/coar/access_right/c_abf123http://purl.org/coar/access_right/c_abf2Revista Colombiana de Ciencias Hortícolas; Vol. 14 No. 2 (2020); 168-177Revista Colombiana de Ciencias Hortícolas; Vol. 14 Núm. 2 (2020); 168-177Revista Colombiana de Ciencias Hortícolas; Vol. 14 No 2 (2020); 168-177Revista Colombiana de Ciencias Hortícolas; V. 14 N. 2 (2020); 168-177Revista Colombiana de Ciencias Hortícolas; v. 14 n. 2 (2020); 168-1772422-37192011-2173PolymorphismsGenetic diversityCitrus fruitsIntroduced varietiesPlant breedingPlant genetic resourcesPolimorfismoVariabilidad genéticaFrutas cítricasVariedades naturalizadasFitomejoramientoRecursos genéticos vegetalesMolecular characterization of mandarin (Citrus reticulata Blanco) using ISSR markersCaracterización molecular de mandarina (Citrus reticulata Blanco) mediante marcadores ISSRTextTextoinfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6622http://purl.org/coar/resource_type/c_2df8fbb1info:eu-repo/semantics/publishedVersionhttp://purl.org/coar/version/c_970fb48d4fbd8a206http://purl.org/coar/version/c_970fb48d4fbd8a85Colombia; Norte de Santander; ArboledasColombia; Norte de Santander; ArboledasSuárez-Contreras, Liliana YanetArango-Toloza, Michell JuliettSánchez-Pabón, Izquel001/16877oai:repositorio.uptc.edu.co:001/168772025-07-18 11:48:58.41https://creativecommons.org/licenses/by-nc/4.0/metadata.onlyhttps://repositorio.uptc.edu.coRepositorio Institucional UPTCrepositorio.uptc@uptc.edu.co
dc.title.en-US.fl_str_mv Molecular characterization of mandarin (Citrus reticulata Blanco) using ISSR markers
dc.title.es-ES.fl_str_mv Caracterización molecular de mandarina (Citrus reticulata Blanco) mediante marcadores ISSR
title Molecular characterization of mandarin (Citrus reticulata Blanco) using ISSR markers
spellingShingle Molecular characterization of mandarin (Citrus reticulata Blanco) using ISSR markers
Polymorphisms
Genetic diversity
Citrus fruits
Introduced varieties
Plant breeding
Plant genetic resources
Polimorfismo
Variabilidad genética
Frutas cítricas
Variedades naturalizadas
Fitomejoramiento
Recursos genéticos vegetales
title_short Molecular characterization of mandarin (Citrus reticulata Blanco) using ISSR markers
title_full Molecular characterization of mandarin (Citrus reticulata Blanco) using ISSR markers
title_fullStr Molecular characterization of mandarin (Citrus reticulata Blanco) using ISSR markers
title_full_unstemmed Molecular characterization of mandarin (Citrus reticulata Blanco) using ISSR markers
title_sort Molecular characterization of mandarin (Citrus reticulata Blanco) using ISSR markers
dc.subject.en-US.fl_str_mv Polymorphisms
Genetic diversity
Citrus fruits
Introduced varieties
Plant breeding
Plant genetic resources
topic Polymorphisms
Genetic diversity
Citrus fruits
Introduced varieties
Plant breeding
Plant genetic resources
Polimorfismo
Variabilidad genética
Frutas cítricas
Variedades naturalizadas
Fitomejoramiento
Recursos genéticos vegetales
dc.subject.es-ES.fl_str_mv Polimorfismo
Variabilidad genética
Frutas cítricas
Variedades naturalizadas
Fitomejoramiento
Recursos genéticos vegetales
description In order to establish the molecular diversity of citrus production systems from Villa Sucre (Colombia), mainly "Creole mandarin", the study analyzed C. reticulata farm’s samples using six ISSR molecular markers. A total of 61 polymorphisms were characterized, 42% of them were highly common, with a mid- average polymorphic information content (PIC) of 0.42 indicating a high polymorphic variation. Molecular relations based in Dice coefficient and the UPGMA algorithm, showed the existing genetic relationships between the crop areas, grouping them in five separate clades and two main subgroups (MDS). This is the first molecular classification done in the area, sets the basis for mandarin crop molecular diversity, and provides vital information for mandarin crop management programs.
publishDate 2020
dc.date.accessioned.none.fl_str_mv 2024-07-08T14:42:38Z
dc.date.available.none.fl_str_mv 2024-07-08T14:42:38Z
dc.date.none.fl_str_mv 2020-05-01
dc.type.en-US.fl_str_mv Text
dc.type.es-ES.fl_str_mv Texto
dc.type.none.fl_str_mv info:eu-repo/semantics/article
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format http://purl.org/coar/resource_type/c_6622
status_str publishedVersion
dc.identifier.none.fl_str_mv https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/view/9397
10.17584/rcch.2020v14i2.9397
dc.identifier.uri.none.fl_str_mv https://repositorio.uptc.edu.co/handle/001/16877
url https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/view/9397
https://repositorio.uptc.edu.co/handle/001/16877
identifier_str_mv 10.17584/rcch.2020v14i2.9397
dc.language.none.fl_str_mv eng
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/view/9397/9890
dc.rights.en-US.fl_str_mv Copyright (c) 2020 Revista Colombiana de Ciencias Hortícolas
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.uri.spa.fl_str_mv https://creativecommons.org/licenses/by-nc/4.0/
dc.rights.coar.spa.fl_str_mv http://purl.org/coar/access_right/c_abf123
rights_invalid_str_mv Copyright (c) 2020 Revista Colombiana de Ciencias Hortícolas
https://creativecommons.org/licenses/by-nc/4.0/
http://purl.org/coar/access_right/c_abf123
http://purl.org/coar/access_right/c_abf2
dc.format.none.fl_str_mv application/pdf
dc.coverage.en-US.fl_str_mv Colombia; Norte de Santander; Arboledas
dc.coverage.es-ES.fl_str_mv Colombia; Norte de Santander; Arboledas
dc.publisher.en-US.fl_str_mv Sociedad Colombiana de Ciencias Hortícolas-SCCH and Universidad Pedagógica y Tecnológica de Colombia-UPTC
dc.source.en-US.fl_str_mv Revista Colombiana de Ciencias Hortícolas; Vol. 14 No. 2 (2020); 168-177
dc.source.es-ES.fl_str_mv Revista Colombiana de Ciencias Hortícolas; Vol. 14 Núm. 2 (2020); 168-177
dc.source.fr-FR.fl_str_mv Revista Colombiana de Ciencias Hortícolas; Vol. 14 No 2 (2020); 168-177
dc.source.it-IT.fl_str_mv Revista Colombiana de Ciencias Hortícolas; V. 14 N. 2 (2020); 168-177
dc.source.pt-BR.fl_str_mv Revista Colombiana de Ciencias Hortícolas; v. 14 n. 2 (2020); 168-177
dc.source.none.fl_str_mv 2422-3719
2011-2173
institution Universidad Pedagógica y Tecnológica de Colombia
repository.name.fl_str_mv Repositorio Institucional UPTC
repository.mail.fl_str_mv repositorio.uptc@uptc.edu.co
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